RNA–Protein interactions for RNA: ENST00000413186.6

SYNE1-211, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 4,860 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-211ENST00000413186 A8MWP4 228 aa5.36□□□□□ -1.55
SYNE1-211ENST00000413186 K7EQZ3 153 aa5.36□□□□□ -1.55
SYNE1-211ENST00000413186 C9orf92A6NGG3 77 aa5.35□□□□□ -1.55
SYNE1-211ENST00000413186 FP248Q71RG6 208 aaPredicted RBP5.35□□□□□ -1.55
SYNE1-211ENST00000413186 ROMO1P60602 79 aa5.35□□□□□ -1.55
SYNE1-211ENST00000413186 SPRR4Q96PI1 79 aa5.35□□□□□ -1.55
SYNE1-211ENST00000413186 Q6ZRN7 208 aaPredicted RBP5.34□□□□□ -1.55
SYNE1-211ENST00000413186 J3QL48 77 aa5.32□□□□□ -1.56
SYNE1-211ENST00000413186 SPRR1AP35321 89 aa5.32□□□□□ -1.56
SYNE1-211ENST00000413186 KRTAP10-2P60368 255 aa5.31□□□□□ -1.56
SYNE1-211ENST00000413186 IGFL1Q6UW32 110 aa5.31□□□□□ -1.56
SYNE1-211ENST00000413186 LINC00304Q8N9R0 145 aa5.31□□□□□ -1.56
SYNE1-211ENST00000413186 DNAH7Q8WXX0 4024 aa5.3□□□□□ -1.56
SYNE1-211ENST00000413186 KRTAP10-1P60331 282 aa5.3□□□□□ -1.56
SYNE1-211ENST00000413186 KLKP1Q107X0 134 aa5.29□□□□□ -1.56
SYNE1-211ENST00000413186 FAM229BQ4G0N7 80 aa5.29□□□□□ -1.56
SYNE1-211ENST00000413186 Q8NDZ9 215 aa5.28□□□□□ -1.56
SYNE1-211ENST00000413186 PRR26Q8N8Z3 221 aa5.28□□□□□ -1.56
SYNE1-211ENST00000413186 A0A1B0GU33 70 aa5.27□□□□□ -1.57
SYNE1-211ENST00000413186 DNAH1Q9P2D7 4330 aa5.27□□□□□ -1.57
SYNE1-211ENST00000413186 A0A1W2PNM2 257 aa5.26□□□□□ -1.57
SYNE1-211ENST00000413186 TENM3Q9P273 2699 aa5.26□□□□□ -1.57
SYNE1-211ENST00000413186 Q8N1X5 172 aa5.26□□□□□ -1.57
SYNE1-211ENST00000413186 VWFP04275 2813 aa5.25□□□□□ -1.57
SYNE1-211ENST00000413186 ANAPC11Q9NYG5 84 aa5.25□□□□□ -1.57
SYNE1-211ENST00000413186 FBN1P35555 2871 aaKnown RBP5.25□□□□□ -1.57
SYNE1-211ENST00000413186 OCR1Q9BZK8 76 aa5.25□□□□□ -1.57
SYNE1-211ENST00000413186 SPRR1BP22528 89 aa5.23□□□□□ -1.57
SYNE1-211ENST00000413186 H7BZZ5 65 aa5.22□□□□□ -1.57
SYNE1-211ENST00000413186 Q8N9P0 234 aaPredicted RBP5.22□□□□□ -1.57
SYNE1-211ENST00000413186 PANO1I0J062 215 aa5.21□□□□□ -1.58
SYNE1-211ENST00000413186 A0A1B0GVX0 72 aa5.2□□□□□ -1.58
SYNE1-211ENST00000413186 Q5VSD8 79 aa5.2□□□□□ -1.58
SYNE1-211ENST00000413186 DSCR10P59022 87 aa5.19□□□□□ -1.58
SYNE1-211ENST00000413186 C20orf166-AS1Q96NR2 134 aa5.18□□□□□ -1.58
SYNE1-211ENST00000413186 KRTAP4-16G5E9R7 235 aaPredicted RBP5.18□□□□□ -1.58
SYNE1-211ENST00000413186 A0A0G2JQZ4 141 aa5.16□□□□□ -1.58
SYNE1-211ENST00000413186 LINC01558Q9Y6Z2 57 aa5.16□□□□□ -1.58
SYNE1-211ENST00000413186 M0R2T5 61 aa5.15□□□□□ -1.59
SYNE1-211ENST00000413186 SPANXA2-OT1Q8N9U9 137 aa5.15□□□□□ -1.59
SYNE1-211ENST00000413186 TENM2Q9NT68 2774 aa5.12□□□□□ -1.59
SYNE1-211ENST00000413186 KRTAP7-1Q8IUC3 87 aa5.11□□□□□ -1.59
SYNE1-211ENST00000413186 Q75L30 129 aa5.11□□□□□ -1.59
SYNE1-211ENST00000413186 Q6ZSA8 131 aa5.1□□□□□ -1.59
SYNE1-211ENST00000413186 DNAH9Q9NYC9 4486 aa5.1□□□□□ -1.59
SYNE1-211ENST00000413186 PKD1L1Q8TDX9 2849 aa5.1□□□□□ -1.59
SYNE1-211ENST00000413186 R4GN34 69 aa5.09□□□□□ -1.59
SYNE1-211ENST00000413186 SPATA8Q6RVD6 105 aa5.08□□□□□ -1.6
SYNE1-211ENST00000413186 KRTAP11-1Q8IUC1 163 aa5.07□□□□□ -1.6
SYNE1-211ENST00000413186 LINC00472Q9H8W2 130 aa5.07□□□□□ -1.6
SYNE1-211ENST00000413186 FRAS1Q86XX4 4008 aa5.06□□□□□ -1.6
SYNE1-211ENST00000413186 DNAH10Q8IVF4 4471 aa5.06□□□□□ -1.6
SYNE1-211ENST00000413186 KRTAP13-1Q8IUC0 172 aa5.06□□□□□ -1.6
SYNE1-211ENST00000413186 TGP01266 2768 aa5.06□□□□□ -1.6
SYNE1-211ENST00000413186 DNAH3Q8TD57 4116 aa5.06□□□□□ -1.6
SYNE1-211ENST00000413186 RPL37P61927 97 aaKnown RBP5.05□□□□□ -1.6
SYNE1-211ENST00000413186 HRES1P13985 223 aa5.05□□□□□ -1.6
SYNE1-211ENST00000413186 KMT2AQ03164 3969 aa5.04□□□□□ -1.6
SYNE1-211ENST00000413186 MMP24-AS1A0A0U1RRL7 71 aa5.03□□□□□ -1.6
SYNE1-211ENST00000413186 OXTP01178 125 aa5.03□□□□□ -1.6
SYNE1-211ENST00000413186 A0A087X002 238 aa5.02□□□□□ -1.61
SYNE1-211ENST00000413186 FBN3Q75N90 2809 aa5.01□□□□□ -1.61
SYNE1-211ENST00000413186 RPS29P62273 56 aaKnown RBP5□□□□□ -1.61
SYNE1-211ENST00000413186 KRTAP25-1Q3LHN0 102 aa5□□□□□ -1.61
SYNE1-211ENST00000413186 A0A1B0GVY2 172 aa4.97□□□□□ -1.61
SYNE1-211ENST00000413186 Q5VV11 94 aa4.97□□□□□ -1.61
SYNE1-211ENST00000413186 ASB16-AS1Q495Z4 193 aa4.96□□□□□ -1.61
SYNE1-211ENST00000413186 FAT2Q9NYQ8 4349 aa4.96□□□□□ -1.62
SYNE1-211ENST00000413186 Q5XG85 94 aa4.95□□□□□ -1.62
SYNE1-211ENST00000413186 KRTAP29-1A8MX34 341 aaPredicted RBP4.94□□□□□ -1.62
SYNE1-211ENST00000413186 KRTAP13-2Q52LG2 175 aa4.94□□□□□ -1.62
SYNE1-211ENST00000413186 C10orf95Q9H7T3 257 aa4.94□□□□□ -1.62
SYNE1-211ENST00000413186 M0QZ58 72 aa4.92□□□□□ -1.62
SYNE1-211ENST00000413186 ZCCHC13Q8WW36 166 aaKnown RBP4.92□□□□□ -1.62
SYNE1-211ENST00000413186 CYSTM1Q9H1C7 97 aa4.92□□□□□ -1.62
SYNE1-211ENST00000413186 P0C880 135 aa4.91□□□□□ -1.62
SYNE1-211ENST00000413186 PP632Q6XCG6 107 aa4.91□□□□□ -1.62
SYNE1-211ENST00000413186 HECTD4Q9Y4D8 3996 aa4.91□□□□□ -1.62
SYNE1-211ENST00000413186 KRTAP1-4P0C5Y4 121 aa4.88□□□□□ -1.63
SYNE1-211ENST00000413186 ADM2Q7Z4H4 148 aa4.87□□□□□ -1.63
SYNE1-211ENST00000413186 S4R3F8 94 aa4.87□□□□□ -1.63
SYNE1-211ENST00000413186 Q5W150 140 aa4.85□□□□□ -1.63
SYNE1-211ENST00000413186 DNAH6Q9C0G6 4158 aa4.85□□□□□ -1.63
SYNE1-211ENST00000413186 VPS13DQ5THJ4 4388 aa4.85□□□□□ -1.63
SYNE1-211ENST00000413186 MEGF8Q7Z7M0 2845 aa4.84□□□□□ -1.63
SYNE1-211ENST00000413186 HUWE1Q7Z6Z7 4374 aaKnown RBP4.83□□□□□ -1.64
SYNE1-211ENST00000413186 PRKDCP78527 4128 aaKnown RBP4.81□□□□□ -1.64
SYNE1-211ENST00000413186 DNAH2Q9P225 4427 aa4.75□□□□□ -1.65
SYNE1-211ENST00000413186 NOTCH2NLQ7Z3S9 236 aa4.75□□□□□ -1.65
SYNE1-211ENST00000413186 KRTAP10-8P60410 259 aa4.74□□□□□ -1.65
SYNE1-211ENST00000413186 ALMS1Q8TCU4 4167 aa4.72□□□□□ -1.65
SYNE1-211ENST00000413186 VPS13BQ7Z7G8 4022 aa4.7□□□□□ -1.66
SYNE1-211ENST00000413186 PKHD1P08F94 4074 aa4.7□□□□□ -1.66
SYNE1-211ENST00000413186 A8MUU9 505 aa4.69□□□□□ -1.66
SYNE1-211ENST00000413186 DYNC2H1Q8NCM8 4307 aaKnown RBP4.69□□□□□ -1.66
SYNE1-211ENST00000413186 A6NN06 94 aa4.68□□□□□ -1.66
SYNE1-211ENST00000413186 DNAH8Q96JB1 4490 aa4.68□□□□□ -1.66
SYNE1-211ENST00000413186 TPRXLQ17RH7 258 aa4.68□□□□□ -1.66
SYNE1-211ENST00000413186 A8MU10 97 aa4.68□□□□□ -1.66
SYNE1-211ENST00000413186 DNHD1Q96M86 4753 aa4.67□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms