RNA–Protein interactions for RNA: ENST00000401468.7

VPS53-203, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 1,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-203ENST00000401468 A0A0G2JQZ4 141 aa5.22□□□□□ -1.57
VPS53-203ENST00000401468 SCGB1A1P11684 91 aa5.22□□□□□ -1.57
VPS53-203ENST00000401468 MTURNQ8N3F0 131 aa5.22□□□□□ -1.57
VPS53-203ENST00000401468 JMJD7-PLA2G4BH0Y9G9 81 aa5.21□□□□□ -1.58
VPS53-203ENST00000401468 GTF2H5Q6ZYL4 71 aa5.21□□□□□ -1.58
VPS53-203ENST00000401468 TRBV7-7A0A0K0K1E9 115 aa5.2□□□□□ -1.58
VPS53-203ENST00000401468 A0A1W2PNM2 257 aa5.2□□□□□ -1.58
VPS53-203ENST00000401468 RBM3P98179 157 aaKnown RBP5.2□□□□□ -1.58
VPS53-203ENST00000401468 ASB16-AS1Q495Z4 193 aa5.2□□□□□ -1.58
VPS53-203ENST00000401468 TEN1Q86WV5 123 aa5.2□□□□□ -1.58
VPS53-203ENST00000401468 LOC110117498A0A087WWA1 95 aa5.19□□□□□ -1.58
VPS53-203ENST00000401468 LIMD2Q9BT23 127 aa5.18□□□□□ -1.58
VPS53-203ENST00000401468 F8W1H4 67 aa5.17□□□□□ -1.58
VPS53-203ENST00000401468 PDE6GP18545 87 aa5.17□□□□□ -1.58
VPS53-203ENST00000401468 Q6ZQT0 140 aa5.17□□□□□ -1.58
VPS53-203ENST00000401468 DSCR8Q96T75 97 aa5.17□□□□□ -1.58
VPS53-203ENST00000401468 A0A0U1RQV1 116 aa5.16□□□□□ -1.58
VPS53-203ENST00000401468 A0A1B0GW54 56 aa5.16□□□□□ -1.58
VPS53-203ENST00000401468 HRCT1Q6UXD1 115 aa5.16□□□□□ -1.58
VPS53-203ENST00000401468 FP248Q71RG6 208 aaPredicted RBP5.16□□□□□ -1.58
VPS53-203ENST00000401468 IGLV7-46A0A075B6I9 117 aa5.14□□□□□ -1.59
VPS53-203ENST00000401468 J3QR89 54 aa5.14□□□□□ -1.59
VPS53-203ENST00000401468 CCKP06307 115 aa5.14□□□□□ -1.59
VPS53-203ENST00000401468 VPS25Q9BRG1 176 aa5.14□□□□□ -1.59
VPS53-203ENST00000401468 C14orf132Q9NPU4 83 aa5.14□□□□□ -1.59
VPS53-203ENST00000401468 A0A1B0GV72 72 aa5.13□□□□□ -1.59
VPS53-203ENST00000401468 C1orf195Q5TG92 126 aa5.13□□□□□ -1.59
VPS53-203ENST00000401468 SS18L2Q9UHA2 77 aa5.13□□□□□ -1.59
VPS53-203ENST00000401468 A0A087WSZ3 146 aa5.12□□□□□ -1.59
VPS53-203ENST00000401468 Q96NJ1 140 aa5.12□□□□□ -1.59
VPS53-203ENST00000401468 TPRXLQ17RH7 258 aa5.1□□□□□ -1.59
VPS53-203ENST00000401468 ETDBQ3ZM63 59 aa5.09□□□□□ -1.59
VPS53-203ENST00000401468 LINC00472Q9H8W2 130 aa5.09□□□□□ -1.59
VPS53-203ENST00000401468 KRTAP13-3Q3SY46 172 aa5.08□□□□□ -1.6
VPS53-203ENST00000401468 Q8N9P0 234 aaPredicted RBP5.05□□□□□ -1.6
VPS53-203ENST00000401468 SIGMAR1Q99720 223 aa5.05□□□□□ -1.6
VPS53-203ENST00000401468 KRTAP4-1Q9BYQ7 146 aa5.05□□□□□ -1.6
VPS53-203ENST00000401468 MUC17Q685J3 4493 aa5.04□□□□□ -1.6
VPS53-203ENST00000401468 J3KT08 172 aa5.02□□□□□ -1.61
VPS53-203ENST00000401468 LCE1AQ5T7P2 110 aa5.02□□□□□ -1.61
VPS53-203ENST00000401468 FAM240AA0A1B0GVK7 77 aa5.01□□□□□ -1.61
VPS53-203ENST00000401468 LINC00846Q9NV44 126 aa5.01□□□□□ -1.61
VPS53-203ENST00000401468 IGKV4-1P06312 121 aa5□□□□□ -1.61
VPS53-203ENST00000401468 NREPQ16612 68 aa5□□□□□ -1.61
VPS53-203ENST00000401468 Q6ZVQ6 151 aa5□□□□□ -1.61
VPS53-203ENST00000401468 C9orf92A6NGG3 77 aa4.98□□□□□ -1.61
VPS53-203ENST00000401468 ACYP1P07311 99 aa4.98□□□□□ -1.61
VPS53-203ENST00000401468 DEFB116Q30KQ4 102 aa4.98□□□□□ -1.61
VPS53-203ENST00000401468 A0A1B0GVX0 72 aa4.97□□□□□ -1.61
VPS53-203ENST00000401468 A8MWP4 228 aa4.97□□□□□ -1.61
VPS53-203ENST00000401468 DSCR10P59022 87 aa4.97□□□□□ -1.61
VPS53-203ENST00000401468 IGKV2-30P06310 120 aa4.96□□□□□ -1.62
VPS53-203ENST00000401468 UBL5Q9BZL1 73 aa4.96□□□□□ -1.62
VPS53-203ENST00000401468 IGKV3D-7A0A0C4DH55 119 aa4.95□□□□□ -1.62
VPS53-203ENST00000401468 KRTAP16-1A8MUX0 517 aa4.95□□□□□ -1.62
VPS53-203ENST00000401468 C8orf87E5RJ46 101 aa4.95□□□□□ -1.62
VPS53-203ENST00000401468 BPY2O14599 106 aa4.94□□□□□ -1.62
VPS53-203ENST00000401468 NOTCH2NLQ7Z3S9 236 aa4.94□□□□□ -1.62
VPS53-203ENST00000401468 PRR15Q8IV56 129 aa4.94□□□□□ -1.62
VPS53-203ENST00000401468 NDUFB1O75438 58 aa4.93□□□□□ -1.62
VPS53-203ENST00000401468 LINC00313P59037 77 aa4.93□□□□□ -1.62
VPS53-203ENST00000401468 C20orf166-AS1Q96NR2 134 aa4.93□□□□□ -1.62
VPS53-203ENST00000401468 IGHV6-1A0A0B4J1U7 121 aa4.92□□□□□ -1.62
VPS53-203ENST00000401468 A8MUU9 505 aa4.92□□□□□ -1.62
VPS53-203ENST00000401468 K7EQZ3 153 aa4.92□□□□□ -1.62
VPS53-203ENST00000401468 RPL37P61927 97 aaKnown RBP4.92□□□□□ -1.62
VPS53-203ENST00000401468 CXCL6P80162 114 aa4.92□□□□□ -1.62
VPS53-203ENST00000401468 Q75L30 129 aa4.92□□□□□ -1.62
VPS53-203ENST00000401468 SEC61BP60468 96 aaKnown RBP4.91□□□□□ -1.62
VPS53-203ENST00000401468 PCOTHQ58A44 107 aa4.91□□□□□ -1.62
VPS53-203ENST00000401468 MMP24-AS1A0A0U1RRL7 71 aa4.9□□□□□ -1.63
VPS53-203ENST00000401468 ATP5EP2Q5VTU8 51 aa4.9□□□□□ -1.63
VPS53-203ENST00000401468 C8orf17Q9NRJ1 99 aa4.9□□□□□ -1.63
VPS53-203ENST00000401468 LINC00643Q86TS7 51 aa4.87□□□□□ -1.63
VPS53-203ENST00000401468 Q8N9L7 120 aa4.87□□□□□ -1.63
VPS53-203ENST00000401468 TMEM254Q8TBM7 123 aa4.86□□□□□ -1.63
VPS53-203ENST00000401468 KRTAP19-2Q3LHN2 52 aa4.85□□□□□ -1.63
VPS53-203ENST00000401468 hDV103S1A0JD37 113 aa4.84□□□□□ -1.63
VPS53-203ENST00000401468 MRPL34Q9BQ48 92 aaKnown RBP4.84□□□□□ -1.63
VPS53-203ENST00000401468 IMUPQ9GZP8 106 aa4.84□□□□□ -1.63
VPS53-203ENST00000401468 HCG22E2RYF7 251 aa4.82□□□□□ -1.64
VPS53-203ENST00000401468 MT1HP80294 61 aa4.81□□□□□ -1.64
VPS53-203ENST00000401468 CASC2Q6XLA1 102 aa4.81□□□□□ -1.64
VPS53-203ENST00000401468 ATP11AUNQ6ZP68 121 aa4.81□□□□□ -1.64
VPS53-203ENST00000401468 ANAPC13Q9BS18 74 aa4.81□□□□□ -1.64
VPS53-203ENST00000401468 WFDC13Q8IUB5 93 aa4.78□□□□□ -1.64
VPS53-203ENST00000401468 ZCCHC13Q8WW36 166 aaKnown RBP4.78□□□□□ -1.64
VPS53-203ENST00000401468 HIST1H4AP62805 103 aaKnown RBP4.75□□□□□ -1.65
VPS53-203ENST00000401468 RPS28P62857 69 aaKnown RBP4.75□□□□□ -1.65
VPS53-203ENST00000401468 FLGP20930 4061 aaPredicted RBP4.74□□□□□ -1.65
VPS53-203ENST00000401468 COX6B2Q6YFQ2 88 aa4.74□□□□□ -1.65
VPS53-203ENST00000401468 A0A087WVE0 104 aa4.73□□□□□ -1.65
VPS53-203ENST00000401468 M0R2T5 61 aa4.73□□□□□ -1.65
VPS53-203ENST00000401468 KRTAP10-7P60409 375 aaPredicted RBP4.73□□□□□ -1.65
VPS53-203ENST00000401468 KRTAP2-2Q9BYT5 123 aa4.73□□□□□ -1.65
VPS53-203ENST00000401468 TP53AIP1Q9HCN2 124 aa4.73□□□□□ -1.65
VPS53-203ENST00000401468 NDUFS5O43920 106 aa4.72□□□□□ -1.65
VPS53-203ENST00000401468 MT-ATP8P03928 68 aa4.72□□□□□ -1.65
VPS53-203ENST00000401468 KRTAP10-6P60371 365 aaPredicted RBP4.72□□□□□ -1.65
VPS53-203ENST00000401468 Q5W150 140 aa4.72□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 61.6 ms