RNA–Protein interactions for RNA: ENST00000394081.7

RARA-202, Transcript of retinoic acid receptor alpha, humanhuman

TSL 1 (best) BASIC

Gene RARA, Length 2,285 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RARA-202ENST00000394081 Q5W150 140 aa13.47□□□□□ -0.25
RARA-202ENST00000394081 DNAH9Q9NYC9 4486 aa13.46□□□□□ -0.25
RARA-202ENST00000394081 Q6ZRN7 208 aaPredicted RBP13.45□□□□□ -0.26
RARA-202ENST00000394081 DMAC1Q96GE9 116 aa13.44□□□□□ -0.26
RARA-202ENST00000394081 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP13.44□□□□□ -0.26
RARA-202ENST00000394081 NBDYA0A0U1RRE5 68 aa13.43□□□□□ -0.26
RARA-202ENST00000394081 IGLV5-52A0A0A0MRZ9 124 aa13.42□□□□□ -0.26
RARA-202ENST00000394081 C8orf87E5RJ46 101 aa13.42□□□□□ -0.26
RARA-202ENST00000394081 ZNF861PO60384 105 aa13.39□□□□□ -0.27
RARA-202ENST00000394081 NOTCH1P46531 2555 aa13.39□□□□□ -0.27
RARA-202ENST00000394081 ALMS1Q8TCU4 4167 aa13.38□□□□□ -0.27
RARA-202ENST00000394081 LINC00313P59037 77 aa13.37□□□□□ -0.27
RARA-202ENST00000394081 PSORS1C2Q9UIG4 136 aa13.37□□□□□ -0.27
RARA-202ENST00000394081 PLA2G1BP04054 148 aaKnown RBP13.36□□□□□ -0.27
RARA-202ENST00000394081 SPATA8Q6RVD6 105 aa13.33□□□□□ -0.28
RARA-202ENST00000394081 A0A1B0GU69 56 aa13.31□□□□□ -0.28
RARA-202ENST00000394081 FAM229AH3BQW9 127 aa13.3□□□□□ -0.28
RARA-202ENST00000394081 SPINK6Q6UWN8 80 aa13.3□□□□□ -0.28
RARA-202ENST00000394081 ANAPC11Q9NYG5 84 aa13.29□□□□□ -0.28
RARA-202ENST00000394081 DYNC2H1Q8NCM8 4307 aaKnown RBP13.29□□□□□ -0.28
RARA-202ENST00000394081 MGAM2Q2M2H8 2515 aa13.28□□□□□ -0.28
RARA-202ENST00000394081 A0A087WTM6 91 aa13.23□□□□□ -0.29
RARA-202ENST00000394081 MEGF8Q7Z7M0 2845 aa13.22□□□□□ -0.29
RARA-202ENST00000394081 IGKV2-30P06310 120 aa13.22□□□□□ -0.29
RARA-202ENST00000394081 SSBP3-AS1Q7Z2R9 100 aa13.22□□□□□ -0.29
RARA-202ENST00000394081 RTL8CO15255 209 aa13.22□□□□□ -0.29
RARA-202ENST00000394081 UQCR11O14957 56 aa13.2□□□□□ -0.3
RARA-202ENST00000394081 STAB2Q8WWQ8 2551 aa13.18□□□□□ -0.3
RARA-202ENST00000394081 NUPR2A6NF83 97 aa13.18□□□□□ -0.3
RARA-202ENST00000394081 PRAC1Q96KF2 57 aa13.18□□□□□ -0.3
RARA-202ENST00000394081 CSMD3Q7Z407 3707 aa13.17□□□□□ -0.3
RARA-202ENST00000394081 CIRBP-AS1Q8TBR5 109 aa13.17□□□□□ -0.3
RARA-202ENST00000394081 MIR22HGQ0VDD5 57 aa13.16□□□□□ -0.3
RARA-202ENST00000394081 COL7A1Q02388 2944 aa13.16□□□□□ -0.3
RARA-202ENST00000394081 IGLV7-43P04211 117 aa13.14□□□□□ -0.31
RARA-202ENST00000394081 DNAH8Q96JB1 4490 aa13.11□□□□□ -0.31
RARA-202ENST00000394081 LINC01554Q52M75 96 aa13.11□□□□□ -0.31
RARA-202ENST00000394081 ADM2Q7Z4H4 148 aa13.09□□□□□ -0.31
RARA-202ENST00000394081 DNAH7Q8WXX0 4024 aa13.09□□□□□ -0.31
RARA-202ENST00000394081 TGP01266 2768 aa13.06□□□□□ -0.32
RARA-202ENST00000394081 KRTAP16-1A8MUX0 517 aa13.01□□□□□ -0.33
RARA-202ENST00000394081 PLECQ15149 4684 aaKnown RBP13□□□□□ -0.33
RARA-202ENST00000394081 HECTD4Q9Y4D8 3996 aa13□□□□□ -0.33
RARA-202ENST00000394081 RETNLBQ9BQ08 111 aa12.97□□□□□ -0.33
RARA-202ENST00000394081 FRAS1Q86XX4 4008 aa12.96□□□□□ -0.33
RARA-202ENST00000394081 IGKV2D-30A0A075B6S6 120 aa12.95□□□□□ -0.34
RARA-202ENST00000394081 PRKDCP78527 4128 aaKnown RBP12.94□□□□□ -0.34
RARA-202ENST00000394081 VPS13DQ5THJ4 4388 aa12.92□□□□□ -0.34
RARA-202ENST00000394081 DNAH17Q9UFH2 4485 aa12.9□□□□□ -0.35
RARA-202ENST00000394081 C4orf48Q5BLP8 95 aa12.85□□□□□ -0.35
RARA-202ENST00000394081 KRTAP13-2Q52LG2 175 aa12.83□□□□□ -0.35
RARA-202ENST00000394081 CSAG1Q6PB30 78 aa12.81□□□□□ -0.36
RARA-202ENST00000394081 C1orf134Q5TEV5 83 aa12.76□□□□□ -0.37
RARA-202ENST00000394081 LY6G6CO95867 125 aa12.73□□□□□ -0.37
RARA-202ENST00000394081 STARD9Q9P2P6 4700 aa12.67□□□□□ -0.38
RARA-202ENST00000394081 DNAH2Q9P225 4427 aa12.65□□□□□ -0.38
RARA-202ENST00000394081 SPINK1P00995 79 aa12.61□□□□□ -0.39
RARA-202ENST00000394081 KRTAP1-4P0C5Y4 121 aa12.61□□□□□ -0.39
RARA-202ENST00000394081 A8MUU9 505 aa12.6□□□□□ -0.39
RARA-202ENST00000394081 Q6ZSA8 131 aa12.58□□□□□ -0.4
RARA-202ENST00000394081 Q8N1X5 172 aa12.57□□□□□ -0.4
RARA-202ENST00000394081 H0YAA0 97 aa12.56□□□□□ -0.4
RARA-202ENST00000394081 KMT2AQ03164 3969 aa12.54□□□□□ -0.4
RARA-202ENST00000394081 DNAH11Q96DT5 4516 aa12.54□□□□□ -0.4
RARA-202ENST00000394081 H3BS24 57 aa12.5□□□□□ -0.41
RARA-202ENST00000394081 KRTAP10-2P60368 255 aa12.5□□□□□ -0.41
RARA-202ENST00000394081 KRTAP25-1Q3LHN0 102 aa12.49□□□□□ -0.41
RARA-202ENST00000394081 RPS29P62273 56 aaKnown RBP12.47□□□□□ -0.41
RARA-202ENST00000394081 TYMSOSQ8TAI1 123 aa12.46□□□□□ -0.41
RARA-202ENST00000394081 LINC00304Q8N9R0 145 aa12.46□□□□□ -0.42
RARA-202ENST00000394081 A0A1B0GU33 70 aa12.45□□□□□ -0.42
RARA-202ENST00000394081 KMT2CQ8NEZ4 4911 aaKnown RBP12.42□□□□□ -0.42
RARA-202ENST00000394081 DNAH5Q8TE73 4624 aa12.4□□□□□ -0.42
RARA-202ENST00000394081 H1FX-AS1Q4G0G2 97 aa12.4□□□□□ -0.42
RARA-202ENST00000394081 DNAH6Q9C0G6 4158 aa12.38□□□□□ -0.43
RARA-202ENST00000394081 KRTAP10-1P60331 282 aa12.37□□□□□ -0.43
RARA-202ENST00000394081 C20orf166-AS1Q96NR2 134 aa12.31□□□□□ -0.44
RARA-202ENST00000394081 KRTAP3-1Q9BYR8 98 aa12.29□□□□□ -0.44
RARA-202ENST00000394081 RYR3Q15413 4870 aa12.29□□□□□ -0.44
RARA-202ENST00000394081 LRP1BQ9NZR2 4599 aa12.29□□□□□ -0.44
RARA-202ENST00000394081 ROMO1P60602 79 aa12.28□□□□□ -0.44
RARA-202ENST00000394081 K7ERS5 55 aa12.27□□□□□ -0.44
RARA-202ENST00000394081 VPS13BQ7Z7G8 4022 aa12.16□□□□□ -0.46
RARA-202ENST00000394081 PKD1P98161 4303 aa12.14□□□□□ -0.47
RARA-202ENST00000394081 COX6B2Q6YFQ2 88 aa12.12□□□□□ -0.47
RARA-202ENST00000394081 C9orf92A6NGG3 77 aa12.07□□□□□ -0.48
RARA-202ENST00000394081 SACSQ9NZJ4 4579 aa12.03□□□□□ -0.48
RARA-202ENST00000394081 RYR2Q92736 4967 aa12□□□□□ -0.49
RARA-202ENST00000394081 FAT2Q9NYQ8 4349 aa11.98□□□□□ -0.49
RARA-202ENST00000394081 RPL37P61927 97 aaKnown RBP11.94□□□□□ -0.5
RARA-202ENST00000394081 CRIPTQ9P021 101 aa11.9□□□□□ -0.5
RARA-202ENST00000394081 HYDINQ4G0P3 5121 aa11.89□□□□□ -0.51
RARA-202ENST00000394081 EPPK1P58107 5090 aaKnown RBP11.88□□□□□ -0.51
RARA-202ENST00000394081 P0C880 135 aa11.85□□□□□ -0.51
RARA-202ENST00000394081 KRTAP10-6P60371 365 aaPredicted RBP11.85□□□□□ -0.51
RARA-202ENST00000394081 FLG2Q5D862 2391 aaPredicted RBP11.84□□□□□ -0.51
RARA-202ENST00000394081 PKHD1L1Q86WI1 4243 aa11.82□□□□□ -0.52
RARA-202ENST00000394081 KRTAP3-3Q9BYR6 98 aa11.76□□□□□ -0.53
RARA-202ENST00000394081 KRTAP13-4Q3LI77 160 aa11.73□□□□□ -0.53
RARA-202ENST00000394081 KRTAP3-2Q9BYR7 98 aa11.72□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms