RNA–Protein interactions for RNA: ENST00000378026.4

CKAP4-201, Transcript of cytoskeleton associated protein 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CKAP4, Length 3,093 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKAP4-201ENST00000378026 ADM2Q7Z4H4 148 aa9.46□□□□□ -0.9
CKAP4-201ENST00000378026 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP9.46□□□□□ -0.9
CKAP4-201ENST00000378026 RETNLBQ9BQ08 111 aa9.45□□□□□ -0.9
CKAP4-201ENST00000378026 DNAH7Q8WXX0 4024 aa9.43□□□□□ -0.9
CKAP4-201ENST00000378026 WWC2-AS2Q96NR7 200 aa9.41□□□□□ -0.9
CKAP4-201ENST00000378026 DNAH3Q8TD57 4116 aa9.41□□□□□ -0.9
CKAP4-201ENST00000378026 ACYP2P14621 99 aa9.39□□□□□ -0.91
CKAP4-201ENST00000378026 FRAS1Q86XX4 4008 aa9.37□□□□□ -0.91
CKAP4-201ENST00000378026 LINC00483Q53H64 154 aa9.36□□□□□ -0.91
CKAP4-201ENST00000378026 PSORS1C2Q9UIG4 136 aa9.36□□□□□ -0.91
CKAP4-201ENST00000378026 APLNQ9ULZ1 77 aa9.35□□□□□ -0.91
CKAP4-201ENST00000378026 CIRBP-AS1Q8TBR5 109 aa9.35□□□□□ -0.91
CKAP4-201ENST00000378026 A0A1B0GU69 56 aa9.34□□□□□ -0.91
CKAP4-201ENST00000378026 C8orf87E5RJ46 101 aa9.34□□□□□ -0.91
CKAP4-201ENST00000378026 SPACA4Q8TDM5 124 aa9.33□□□□□ -0.92
CKAP4-201ENST00000378026 ZNF706Q9Y5V0 76 aaPredicted RBP9.33□□□□□ -0.92
CKAP4-201ENST00000378026 KRTAP13-3Q3SY46 172 aa9.31□□□□□ -0.92
CKAP4-201ENST00000378026 NBDYA0A0U1RRE5 68 aa9.3□□□□□ -0.92
CKAP4-201ENST00000378026 DNAH8Q96JB1 4490 aa9.29□□□□□ -0.92
CKAP4-201ENST00000378026 IGLV5-52A0A0A0MRZ9 124 aa9.27□□□□□ -0.93
CKAP4-201ENST00000378026 ZNF861PO60384 105 aa9.26□□□□□ -0.93
CKAP4-201ENST00000378026 PLECQ15149 4684 aaKnown RBP9.26□□□□□ -0.93
CKAP4-201ENST00000378026 DMAC1Q96GE9 116 aa9.25□□□□□ -0.93
CKAP4-201ENST00000378026 Q6ZRN7 208 aaPredicted RBP9.25□□□□□ -0.93
CKAP4-201ENST00000378026 ALMS1Q8TCU4 4167 aa9.25□□□□□ -0.93
CKAP4-201ENST00000378026 PLA2G1BP04054 148 aaKnown RBP9.23□□□□□ -0.93
CKAP4-201ENST00000378026 MIR22HGQ0VDD5 57 aa9.23□□□□□ -0.93
CKAP4-201ENST00000378026 LINC01554Q52M75 96 aa9.2□□□□□ -0.94
CKAP4-201ENST00000378026 SPATA8Q6RVD6 105 aa9.2□□□□□ -0.94
CKAP4-201ENST00000378026 RTL8CO15255 209 aa9.19□□□□□ -0.94
CKAP4-201ENST00000378026 A0A087WTM6 91 aa9.18□□□□□ -0.94
CKAP4-201ENST00000378026 UQCR11O14957 56 aa9.18□□□□□ -0.94
CKAP4-201ENST00000378026 IGKV2D-30A0A075B6S6 120 aa9.17□□□□□ -0.94
CKAP4-201ENST00000378026 IGKV2-30P06310 120 aa9.17□□□□□ -0.94
CKAP4-201ENST00000378026 TGP01266 2768 aa9.16□□□□□ -0.94
CKAP4-201ENST00000378026 FAM229AH3BQW9 127 aa9.16□□□□□ -0.94
CKAP4-201ENST00000378026 C4orf48Q5BLP8 95 aa9.15□□□□□ -0.95
CKAP4-201ENST00000378026 SPINK1P00995 79 aa9.13□□□□□ -0.95
CKAP4-201ENST00000378026 CSAG1Q6PB30 78 aa9.13□□□□□ -0.95
CKAP4-201ENST00000378026 HECTD4Q9Y4D8 3996 aa9.12□□□□□ -0.95
CKAP4-201ENST00000378026 DNAH17Q9UFH2 4485 aa9.11□□□□□ -0.95
CKAP4-201ENST00000378026 IGLV7-43P04211 117 aa9.1□□□□□ -0.95
CKAP4-201ENST00000378026 FBN3Q75N90 2809 aa9.09□□□□□ -0.95
CKAP4-201ENST00000378026 MEGF8Q7Z7M0 2845 aa9.08□□□□□ -0.96
CKAP4-201ENST00000378026 SSBP3-AS1Q7Z2R9 100 aa9.03□□□□□ -0.96
CKAP4-201ENST00000378026 KMT2AQ03164 3969 aa9.03□□□□□ -0.96
CKAP4-201ENST00000378026 STARD9Q9P2P6 4700 aa9.02□□□□□ -0.97
CKAP4-201ENST00000378026 DYNC2H1Q8NCM8 4307 aaKnown RBP9.02□□□□□ -0.97
CKAP4-201ENST00000378026 NUPR2A6NF83 97 aa9.01□□□□□ -0.97
CKAP4-201ENST00000378026 H3BS24 57 aa9.01□□□□□ -0.97
CKAP4-201ENST00000378026 Q8N1X5 172 aa9□□□□□ -0.97
CKAP4-201ENST00000378026 DNAH2Q9P225 4427 aa8.99□□□□□ -0.97
CKAP4-201ENST00000378026 VPS13DQ5THJ4 4388 aa8.97□□□□□ -0.97
CKAP4-201ENST00000378026 KRTAP16-1A8MUX0 517 aa8.96□□□□□ -0.97
CKAP4-201ENST00000378026 KRTAP13-2Q52LG2 175 aa8.96□□□□□ -0.98
CKAP4-201ENST00000378026 DNAH6Q9C0G6 4158 aa8.91□□□□□ -0.98
CKAP4-201ENST00000378026 FLG2Q5D862 2391 aaPredicted RBP8.89□□□□□ -0.99
CKAP4-201ENST00000378026 DNAH11Q96DT5 4516 aa8.87□□□□□ -0.99
CKAP4-201ENST00000378026 C1orf134Q5TEV5 83 aa8.86□□□□□ -0.99
CKAP4-201ENST00000378026 Q6ZSA8 131 aa8.82□□□□□ -1
CKAP4-201ENST00000378026 KRTAP10-2P60368 255 aa8.82□□□□□ -1
CKAP4-201ENST00000378026 H0YAA0 97 aa8.82□□□□□ -1
CKAP4-201ENST00000378026 TYMSOSQ8TAI1 123 aa8.81□□□□□ -1
CKAP4-201ENST00000378026 LRP1BQ9NZR2 4599 aa8.79□□□□□ -1
CKAP4-201ENST00000378026 PRKDCP78527 4128 aaKnown RBP8.79□□□□□ -1
CKAP4-201ENST00000378026 LY6G6CO95867 125 aa8.79□□□□□ -1
CKAP4-201ENST00000378026 CRIPTQ9P021 101 aa8.79□□□□□ -1
CKAP4-201ENST00000378026 A8MUU9 505 aa8.76□□□□□ -1.01
CKAP4-201ENST00000378026 LINC00304Q8N9R0 145 aa8.76□□□□□ -1.01
CKAP4-201ENST00000378026 DNAH5Q8TE73 4624 aa8.75□□□□□ -1.01
CKAP4-201ENST00000378026 KRTAP1-4P0C5Y4 121 aa8.72□□□□□ -1.01
CKAP4-201ENST00000378026 KRTAP25-1Q3LHN0 102 aa8.72□□□□□ -1.01
CKAP4-201ENST00000378026 A0A1B0GU33 70 aa8.71□□□□□ -1.01
CKAP4-201ENST00000378026 KRTAP10-1P60331 282 aa8.68□□□□□ -1.02
CKAP4-201ENST00000378026 C9orf92A6NGG3 77 aa8.67□□□□□ -1.02
CKAP4-201ENST00000378026 VPS13BQ7Z7G8 4022 aa8.64□□□□□ -1.03
CKAP4-201ENST00000378026 ROMO1P60602 79 aa8.63□□□□□ -1.03
CKAP4-201ENST00000378026 H1FX-AS1Q4G0G2 97 aa8.62□□□□□ -1.03
CKAP4-201ENST00000378026 KRTAP3-1Q9BYR8 98 aa8.6□□□□□ -1.03
CKAP4-201ENST00000378026 DMBT1Q9UGM3 2413 aaPredicted RBP8.55□□□□□ -1.04
CKAP4-201ENST00000378026 FAT2Q9NYQ8 4349 aa8.54□□□□□ -1.04
CKAP4-201ENST00000378026 K7ERS5 55 aa8.52□□□□□ -1.05
CKAP4-201ENST00000378026 COX6B2Q6YFQ2 88 aa8.5□□□□□ -1.05
CKAP4-201ENST00000378026 PKD1P98161 4303 aa8.48□□□□□ -1.05
CKAP4-201ENST00000378026 HYDINQ4G0P3 5121 aa8.45□□□□□ -1.06
CKAP4-201ENST00000378026 DNHD1Q96M86 4753 aa8.43□□□□□ -1.06
CKAP4-201ENST00000378026 P0C880 135 aa8.43□□□□□ -1.06
CKAP4-201ENST00000378026 A0A0D9SG42 100 aa8.43□□□□□ -1.06
CKAP4-201ENST00000378026 SMR3BP02814 79 aaPredicted RBP8.42□□□□□ -1.06
CKAP4-201ENST00000378026 C20orf166-AS1Q96NR2 134 aa8.4□□□□□ -1.06
CKAP4-201ENST00000378026 SPINT4Q6UDR6 99 aa8.35□□□□□ -1.07
CKAP4-201ENST00000378026 PKHD1P08F94 4074 aa8.35□□□□□ -1.07
CKAP4-201ENST00000378026 RPL37P61927 97 aaKnown RBP8.31□□□□□ -1.08
CKAP4-201ENST00000378026 C10orf95Q9H7T3 257 aa8.31□□□□□ -1.08
CKAP4-201ENST00000378026 RPS29P62273 56 aaKnown RBP8.3□□□□□ -1.08
CKAP4-201ENST00000378026 KRTAP13-4Q3LI77 160 aa8.3□□□□□ -1.08
CKAP4-201ENST00000378026 TPRXLQ17RH7 258 aa8.29□□□□□ -1.08
CKAP4-201ENST00000378026 FAT1Q14517 4588 aa8.27□□□□□ -1.09
CKAP4-201ENST00000378026 KRTAP10-6P60371 365 aaPredicted RBP8.25□□□□□ -1.09
CKAP4-201ENST00000378026 SACSQ9NZJ4 4579 aa8.23□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 268.9 ms