RNA–Protein interactions for RNA: ENST00000357806.11

CLN3-203, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,469 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-203ENST00000357806 J3KT08 172 aa8.99□□□□□ -0.97
CLN3-203ENST00000357806 A8MUU9 505 aa8.98□□□□□ -0.97
CLN3-203ENST00000357806 LCE2AQ5TA79 106 aaPredicted RBP8.98□□□□□ -0.97
CLN3-203ENST00000357806 IGHV6-1A0A0B4J1U7 121 aa8.97□□□□□ -0.97
CLN3-203ENST00000357806 K7EP34 96 aa8.96□□□□□ -0.97
CLN3-203ENST00000357806 GTF2H5Q6ZYL4 71 aa8.96□□□□□ -0.97
CLN3-203ENST00000357806 A0A1B0GVX0 72 aa8.96□□□□□ -0.98
CLN3-203ENST00000357806 C8orf87E5RJ46 101 aa8.94□□□□□ -0.98
CLN3-203ENST00000357806 KRTAP16-1A8MUX0 517 aa8.93□□□□□ -0.98
CLN3-203ENST00000357806 NOTCH2NLQ7Z3S9 236 aa8.92□□□□□ -0.98
CLN3-203ENST00000357806 NDUFB1O75438 58 aa8.91□□□□□ -0.98
CLN3-203ENST00000357806 NREPQ16612 68 aa8.89□□□□□ -0.99
CLN3-203ENST00000357806 SMCPP49901 116 aaPredicted RBP8.89□□□□□ -0.99
CLN3-203ENST00000357806 A8MWP4 228 aa8.88□□□□□ -0.99
CLN3-203ENST00000357806 KRTAP19-2Q3LHN2 52 aa8.88□□□□□ -0.99
CLN3-203ENST00000357806 PRO0461Q9UI25 63 aa8.86□□□□□ -0.99
CLN3-203ENST00000357806 LCE2CQ5TA81 110 aa8.85□□□□□ -0.99
CLN3-203ENST00000357806 IGKV3D-7A0A0C4DH55 119 aa8.82□□□□□ -1
CLN3-203ENST00000357806 COX6B2Q6YFQ2 88 aa8.81□□□□□ -1
CLN3-203ENST00000357806 C8orf17Q9NRJ1 99 aa8.81□□□□□ -1
CLN3-203ENST00000357806 F8W1H4 67 aa8.8□□□□□ -1
CLN3-203ENST00000357806 PRR15Q8IV56 129 aa8.79□□□□□ -1
CLN3-203ENST00000357806 BPY2O14599 106 aa8.76□□□□□ -1.01
CLN3-203ENST00000357806 MT1HP80294 61 aa8.76□□□□□ -1.01
CLN3-203ENST00000357806 Q6ZVQ6 151 aa8.76□□□□□ -1.01
CLN3-203ENST00000357806 Q8N9P0 234 aaPredicted RBP8.76□□□□□ -1.01
CLN3-203ENST00000357806 K7EQZ3 153 aa8.74□□□□□ -1.01
CLN3-203ENST00000357806 MMP24-AS1A0A0U1RRL7 71 aa8.72□□□□□ -1.01
CLN3-203ENST00000357806 ZCCHC13Q8WW36 166 aaKnown RBP8.72□□□□□ -1.01
CLN3-203ENST00000357806 UBL5Q9BZL1 73 aa8.7□□□□□ -1.02
CLN3-203ENST00000357806 ETDBQ3ZM63 59 aa8.7□□□□□ -1.02
CLN3-203ENST00000357806 TMEM254Q8TBM7 123 aa8.7□□□□□ -1.02
CLN3-203ENST00000357806 MRPL34Q9BQ48 92 aaKnown RBP8.69□□□□□ -1.02
CLN3-203ENST00000357806 LINC00846Q9NV44 126 aa8.69□□□□□ -1.02
CLN3-203ENST00000357806 hDV103S1A0JD37 113 aa8.67□□□□□ -1.02
CLN3-203ENST00000357806 FLGP20930 4061 aaPredicted RBP8.67□□□□□ -1.02
CLN3-203ENST00000357806 M0R2T5 61 aa8.64□□□□□ -1.03
CLN3-203ENST00000357806 KRTAP9-2Q9BYQ4 174 aa8.64□□□□□ -1.03
CLN3-203ENST00000357806 Q8N9L7 120 aa8.64□□□□□ -1.03
CLN3-203ENST00000357806 HRES1P13985 223 aa8.62□□□□□ -1.03
CLN3-203ENST00000357806 RBM12B-AS1Q9P1G2 102 aa8.62□□□□□ -1.03
CLN3-203ENST00000357806 NDUFS5O43920 106 aa8.61□□□□□ -1.03
CLN3-203ENST00000357806 FAM236DA0A1B0GTK5 79 aa8.6□□□□□ -1.03
CLN3-203ENST00000357806 FAM236CP0DP71 79 aa8.6□□□□□ -1.03
CLN3-203ENST00000357806 SPINK7P58062 85 aa8.59□□□□□ -1.03
CLN3-203ENST00000357806 WFDC13Q8IUB5 93 aa8.59□□□□□ -1.03
CLN3-203ENST00000357806 CASC2Q6XLA1 102 aa8.58□□□□□ -1.04
CLN3-203ENST00000357806 MPLKIPQ8TAP9 179 aa8.58□□□□□ -1.04
CLN3-203ENST00000357806 PCP4P48539 62 aa8.56□□□□□ -1.04
CLN3-203ENST00000357806 KRTAP10-6P60371 365 aaPredicted RBP8.56□□□□□ -1.04
CLN3-203ENST00000357806 J3QR89 54 aa8.54□□□□□ -1.04
CLN3-203ENST00000357806 LORP23490 312 aaPredicted RBP8.54□□□□□ -1.04
CLN3-203ENST00000357806 CXCL6P80162 114 aa8.53□□□□□ -1.04
CLN3-203ENST00000357806 HCG22E2RYF7 251 aa8.52□□□□□ -1.05
CLN3-203ENST00000357806 K7ERU9 68 aa8.52□□□□□ -1.05
CLN3-203ENST00000357806 ACYP1P07311 99 aa8.51□□□□□ -1.05
CLN3-203ENST00000357806 FAM240AA0A1B0GVK7 77 aa8.48□□□□□ -1.05
CLN3-203ENST00000357806 Q5W150 140 aa8.45□□□□□ -1.06
CLN3-203ENST00000357806 LCE2DQ5TA82 110 aaPredicted RBP8.44□□□□□ -1.06
CLN3-203ENST00000357806 C7orf65Q6ZTY9 151 aa8.43□□□□□ -1.06
CLN3-203ENST00000357806 IGKV2D-30A0A075B6S6 120 aa8.42□□□□□ -1.06
CLN3-203ENST00000357806 IGKV2-30P06310 120 aa8.42□□□□□ -1.06
CLN3-203ENST00000357806 ATP5EP2Q5VTU8 51 aa8.4□□□□□ -1.06
CLN3-203ENST00000357806 TP53AIP1Q9HCN2 124 aa8.37□□□□□ -1.07
CLN3-203ENST00000357806 KRTAP9-6A0A140TA67 174 aa8.36□□□□□ -1.07
CLN3-203ENST00000357806 SCGB1A1P11684 91 aa8.33□□□□□ -1.08
CLN3-203ENST00000357806 HIST1H4AP62805 103 aaKnown RBP8.31□□□□□ -1.08
CLN3-203ENST00000357806 KRTAP9-8Q9BYQ0 159 aa8.31□□□□□ -1.08
CLN3-203ENST00000357806 LINC00643Q86TS7 51 aa8.3□□□□□ -1.08
CLN3-203ENST00000357806 H1FX-AS1Q4G0G2 97 aa8.27□□□□□ -1.09
CLN3-203ENST00000357806 C4orf26Q17RF5 130 aa8.24□□□□□ -1.09
CLN3-203ENST00000357806 TRAV22A0A0B4J277 110 aa8.21□□□□□ -1.09
CLN3-203ENST00000357806 MT2AP02795 61 aa8.21□□□□□ -1.09
CLN3-203ENST00000357806 MT-ATP8P03928 68 aa8.2□□□□□ -1.1
CLN3-203ENST00000357806 FSIP2Q5CZC0 6907 aa8.2□□□□□ -1.1
CLN3-203ENST00000357806 A0A087WVE0 104 aa8.19□□□□□ -1.1
CLN3-203ENST00000357806 UQCRQO14949 82 aa8.16□□□□□ -1.1
CLN3-203ENST00000357806 CRCT1Q9UGL9 99 aa8.16□□□□□ -1.1
CLN3-203ENST00000357806 MT1FP04733 61 aa8.15□□□□□ -1.1
CLN3-203ENST00000357806 LOC101927531A0A1B0GV80 90 aa8.14□□□□□ -1.11
CLN3-203ENST00000357806 KRTAP10-10P60014 251 aa8.13□□□□□ -1.11
CLN3-203ENST00000357806 CYP4F30PQ9H0H9 118 aa8.13□□□□□ -1.11
CLN3-203ENST00000357806 C1orf64Q8NEQ6 169 aa8.13□□□□□ -1.11
CLN3-203ENST00000357806 H0Y9P7 68 aa8.11□□□□□ -1.11
CLN3-203ENST00000357806 ATOX1O00244 68 aa8.11□□□□□ -1.11
CLN3-203ENST00000357806 IMUPQ9GZP8 106 aa8.1□□□□□ -1.11
CLN3-203ENST00000357806 KRTAP3-1Q9BYR8 98 aa8.09□□□□□ -1.11
CLN3-203ENST00000357806 S4R3F8 94 aa8.06□□□□□ -1.12
CLN3-203ENST00000357806 OCR1Q9BZK8 76 aa8.04□□□□□ -1.12
CLN3-203ENST00000357806 KRTAP9-3Q9BYQ3 159 aa8.03□□□□□ -1.12
CLN3-203ENST00000357806 C5orf47Q569G3 176 aa8□□□□□ -1.13
CLN3-203ENST00000357806 FAM236AA0A1B0GUQ0 79 aa7.99□□□□□ -1.13
CLN3-203ENST00000357806 FAM236BA0A1B0GV22 79 aa7.99□□□□□ -1.13
CLN3-203ENST00000357806 MP68P56378 58 aa7.99□□□□□ -1.13
CLN3-203ENST00000357806 LCA10Q71F78 164 aa7.99□□□□□ -1.13
CLN3-203ENST00000357806 LINC00208Q96KT6 92 aa7.99□□□□□ -1.13
CLN3-203ENST00000357806 LCE2BO14633 110 aa7.95□□□□□ -1.14
CLN3-203ENST00000357806 CSAG1Q6PB30 78 aa7.95□□□□□ -1.14
CLN3-203ENST00000357806 H3BPC8 53 aa7.9□□□□□ -1.14
CLN3-203ENST00000357806 KLKP1Q107X0 134 aa7.9□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 56.2 ms