RNA–Protein interactions for RNA: ENST00000342220.9

COL18A1-201, Transcript of collagen type XVIII alpha 1 chain, humanhuman

TSL 2

Gene COL18A1, Length 3,386 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1-201ENST00000342220 CDC42SE1Q9NRR8 79 aa7.99□□□□□ -1.13
COL18A1-201ENST00000342220 A0A087WSZ3 146 aa7.98□□□□□ -1.13
COL18A1-201ENST00000342220 PRAC1Q96KF2 57 aa7.98□□□□□ -1.13
COL18A1-201ENST00000342220 FRAS1Q86XX4 4008 aa7.97□□□□□ -1.13
COL18A1-201ENST00000342220 KMT2CQ8NEZ4 4911 aaKnown RBP7.97□□□□□ -1.13
COL18A1-201ENST00000342220 LOC101927531A0A1B0GV80 90 aa7.94□□□□□ -1.14
COL18A1-201ENST00000342220 SPINK6Q6UWN8 80 aa7.94□□□□□ -1.14
COL18A1-201ENST00000342220 PLAC8Q9NZF1 115 aa7.93□□□□□ -1.14
COL18A1-201ENST00000342220 SPAG11AQ6PDA7 123 aa7.92□□□□□ -1.14
COL18A1-201ENST00000342220 LINC00313P59037 77 aa7.92□□□□□ -1.14
COL18A1-201ENST00000342220 ALMS1Q8TCU4 4167 aa7.92□□□□□ -1.14
COL18A1-201ENST00000342220 RPL37AP61513 92 aaKnown RBP7.91□□□□□ -1.14
COL18A1-201ENST00000342220 COA5Q86WW8 74 aa7.91□□□□□ -1.14
COL18A1-201ENST00000342220 ZNF861PO60384 105 aa7.9□□□□□ -1.14
COL18A1-201ENST00000342220 H0Y9P7 68 aa7.9□□□□□ -1.14
COL18A1-201ENST00000342220 IGLV8-61A0A075B6I0 122 aa7.9□□□□□ -1.15
COL18A1-201ENST00000342220 DMBT1Q9UGM3 2413 aaPredicted RBP7.89□□□□□ -1.15
COL18A1-201ENST00000342220 PKHD1P08F94 4074 aa7.89□□□□□ -1.15
COL18A1-201ENST00000342220 IGLV7-43P04211 117 aa7.89□□□□□ -1.15
COL18A1-201ENST00000342220 SPINK7P58062 85 aa7.88□□□□□ -1.15
COL18A1-201ENST00000342220 SACSQ9NZJ4 4579 aa7.88□□□□□ -1.15
COL18A1-201ENST00000342220 HECTD4Q9Y4D8 3996 aa7.88□□□□□ -1.15
COL18A1-201ENST00000342220 ADM2Q7Z4H4 148 aa7.88□□□□□ -1.15
COL18A1-201ENST00000342220 SPANXA2-OT1Q8N9U9 137 aa7.87□□□□□ -1.15
COL18A1-201ENST00000342220 H0Y9J4 135 aa7.86□□□□□ -1.15
COL18A1-201ENST00000342220 LINC01554Q52M75 96 aa7.86□□□□□ -1.15
COL18A1-201ENST00000342220 PRR26Q8N8Z3 221 aa7.85□□□□□ -1.15
COL18A1-201ENST00000342220 DNAH17Q9UFH2 4485 aa7.84□□□□□ -1.15
COL18A1-201ENST00000342220 CASC2Q6XLA1 102 aa7.84□□□□□ -1.15
COL18A1-201ENST00000342220 LRP1BQ9NZR2 4599 aa7.83□□□□□ -1.16
COL18A1-201ENST00000342220 PCOTHQ58A44 107 aa7.82□□□□□ -1.16
COL18A1-201ENST00000342220 KRTAP29-1A8MX34 341 aaPredicted RBP7.81□□□□□ -1.16
COL18A1-201ENST00000342220 SPRR1BP22528 89 aa7.81□□□□□ -1.16
COL18A1-201ENST00000342220 ZNF706Q9Y5V0 76 aaPredicted RBP7.81□□□□□ -1.16
COL18A1-201ENST00000342220 FAT1Q14517 4588 aa7.81□□□□□ -1.16
COL18A1-201ENST00000342220 DNAH5Q8TE73 4624 aa7.81□□□□□ -1.16
COL18A1-201ENST00000342220 PLA2G1BP04054 148 aaKnown RBP7.8□□□□□ -1.16
COL18A1-201ENST00000342220 LINC00472Q9H8W2 130 aa7.79□□□□□ -1.16
COL18A1-201ENST00000342220 LINC01558Q9Y6Z2 57 aa7.79□□□□□ -1.16
COL18A1-201ENST00000342220 KRTAP13-1Q8IUC0 172 aa7.78□□□□□ -1.16
COL18A1-201ENST00000342220 A8MWP4 228 aa7.77□□□□□ -1.16
COL18A1-201ENST00000342220 A0A087X002 238 aa7.77□□□□□ -1.17
COL18A1-201ENST00000342220 DNAH8Q96JB1 4490 aa7.77□□□□□ -1.17
COL18A1-201ENST00000342220 CDK2AP2O75956 126 aa7.76□□□□□ -1.17
COL18A1-201ENST00000342220 H3BPC8 53 aa7.74□□□□□ -1.17
COL18A1-201ENST00000342220 IGHV6-1A0A0B4J1U7 121 aa7.73□□□□□ -1.17
COL18A1-201ENST00000342220 IGLV7-46A0A075B6I9 117 aa7.73□□□□□ -1.17
COL18A1-201ENST00000342220 FAT2Q9NYQ8 4349 aa7.73□□□□□ -1.17
COL18A1-201ENST00000342220 PKD1P98161 4303 aa7.72□□□□□ -1.17
COL18A1-201ENST00000342220 DYNC1H1Q14204 4646 aaKnown RBP7.72□□□□□ -1.17
COL18A1-201ENST00000342220 Q6ZSA8 131 aa7.71□□□□□ -1.17
COL18A1-201ENST00000342220 MMP24-AS1A0A0U1RRL7 71 aa7.7□□□□□ -1.18
COL18A1-201ENST00000342220 TYMSOSQ8TAI1 123 aa7.7□□□□□ -1.18
COL18A1-201ENST00000342220 RYR2Q92736 4967 aa7.7□□□□□ -1.18
COL18A1-201ENST00000342220 RYR3Q15413 4870 aa7.68□□□□□ -1.18
COL18A1-201ENST00000342220 Q96NJ1 140 aa7.67□□□□□ -1.18
COL18A1-201ENST00000342220 RETNLBQ9BQ08 111 aa7.67□□□□□ -1.18
COL18A1-201ENST00000342220 VPS13BQ7Z7G8 4022 aa7.66□□□□□ -1.18
COL18A1-201ENST00000342220 FAM229AH3BQW9 127 aa7.64□□□□□ -1.19
COL18A1-201ENST00000342220 HRES1P13985 223 aa7.64□□□□□ -1.19
COL18A1-201ENST00000342220 KRTAP13-2Q52LG2 175 aa7.63□□□□□ -1.19
COL18A1-201ENST00000342220 A0A1B0GVY2 172 aa7.63□□□□□ -1.19
COL18A1-201ENST00000342220 KIAA1109Q2LD37 5005 aa7.62□□□□□ -1.19
COL18A1-201ENST00000342220 LINC00483Q53H64 154 aa7.62□□□□□ -1.19
COL18A1-201ENST00000342220 CSAG1Q6PB30 78 aa7.61□□□□□ -1.19
COL18A1-201ENST00000342220 C8orf17Q9NRJ1 99 aa7.6□□□□□ -1.19
COL18A1-201ENST00000342220 ASB16-AS1Q495Z4 193 aa7.59□□□□□ -1.2
COL18A1-201ENST00000342220 Q5VSD8 79 aa7.58□□□□□ -1.2
COL18A1-201ENST00000342220 A0A1B0GVX0 72 aa7.56□□□□□ -1.2
COL18A1-201ENST00000342220 NOTCH2NLQ7Z3S9 236 aa7.56□□□□□ -1.2
COL18A1-201ENST00000342220 SSBP3-AS1Q7Z2R9 100 aa7.56□□□□□ -1.2
COL18A1-201ENST00000342220 TP53AIP1Q9HCN2 124 aa7.56□□□□□ -1.2
COL18A1-201ENST00000342220 KRTAP1-4P0C5Y4 121 aa7.55□□□□□ -1.2
COL18A1-201ENST00000342220 APOBP04114 4563 aaKnown RBP7.55□□□□□ -1.2
COL18A1-201ENST00000342220 LINC00304Q8N9R0 145 aa7.54□□□□□ -1.2
COL18A1-201ENST00000342220 C9orf92A6NGG3 77 aa7.52□□□□□ -1.21
COL18A1-201ENST00000342220 MRPL34Q9BQ48 92 aaKnown RBP7.52□□□□□ -1.21
COL18A1-201ENST00000342220 EPPK1P58107 5090 aaKnown RBP7.49□□□□□ -1.21
COL18A1-201ENST00000342220 LRP1Q07954 4544 aaKnown RBP7.48□□□□□ -1.21
COL18A1-201ENST00000342220 A0A1B0GU69 56 aa7.47□□□□□ -1.21
COL18A1-201ENST00000342220 MIR22HGQ0VDD5 57 aa7.45□□□□□ -1.22
COL18A1-201ENST00000342220 Q5W150 140 aa7.44□□□□□ -1.22
COL18A1-201ENST00000342220 MYCBP2O75592 4640 aa7.44□□□□□ -1.22
COL18A1-201ENST00000342220 SPATA8Q6RVD6 105 aa7.43□□□□□ -1.22
COL18A1-201ENST00000342220 SPINK1P00995 79 aa7.4□□□□□ -1.22
COL18A1-201ENST00000342220 UQCR11O14957 56 aa7.39□□□□□ -1.23
COL18A1-201ENST00000342220 ACYP2P14621 99 aa7.38□□□□□ -1.23
COL18A1-201ENST00000342220 RYR1P21817 5038 aa7.38□□□□□ -1.23
COL18A1-201ENST00000342220 PKHD1L1Q86WI1 4243 aa7.38□□□□□ -1.23
COL18A1-201ENST00000342220 KRTAP13-3Q3SY46 172 aa7.38□□□□□ -1.23
COL18A1-201ENST00000342220 KRTAP17-1Q9BYP8 105 aa7.37□□□□□ -1.23
COL18A1-201ENST00000342220 Q8N1X5 172 aa7.37□□□□□ -1.23
COL18A1-201ENST00000342220 IGKV2D-30A0A075B6S6 120 aa7.35□□□□□ -1.23
COL18A1-201ENST00000342220 IGKV2-30P06310 120 aa7.35□□□□□ -1.23
COL18A1-201ENST00000342220 ROMO1P60602 79 aa7.34□□□□□ -1.23
COL18A1-201ENST00000342220 KRTAP10-4P60372 401 aaPredicted RBP7.33□□□□□ -1.24
COL18A1-201ENST00000342220 HSPG2P98160 4391 aa7.33□□□□□ -1.24
COL18A1-201ENST00000342220 KRTAP4-5Q9BYR2 181 aa7.33□□□□□ -1.24
COL18A1-201ENST00000342220 FAT3Q8TDW7 4589 aa7.31□□□□□ -1.24
COL18A1-201ENST00000342220 J3QL48 77 aa7.25□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 101.2 ms