RNA–Protein interactions for RNA: ENST00000339950.4

USP1-201, Transcript of ubiquitin specific peptidase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP1, Length 3,996 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP1-201ENST00000339950 LINC00472Q9H8W2 130 aa7.23□□□□□ -1.25
USP1-201ENST00000339950 CDC42SE1Q9NRR8 79 aa7.22□□□□□ -1.25
USP1-201ENST00000339950 MMP24-AS1A0A0U1RRL7 71 aa7.22□□□□□ -1.25
USP1-201ENST00000339950 A0A1B0GVX0 72 aa7.2□□□□□ -1.26
USP1-201ENST00000339950 ZCCHC13Q8WW36 166 aaKnown RBP7.2□□□□□ -1.26
USP1-201ENST00000339950 DNAH10Q8IVF4 4471 aa7.2□□□□□ -1.26
USP1-201ENST00000339950 SPANXA2-OT1Q8N9U9 137 aa7.19□□□□□ -1.26
USP1-201ENST00000339950 LCA10Q71F78 164 aa7.18□□□□□ -1.26
USP1-201ENST00000339950 KRTAP29-1A8MX34 341 aaPredicted RBP7.16□□□□□ -1.26
USP1-201ENST00000339950 KRTAP10-2P60368 255 aa7.16□□□□□ -1.26
USP1-201ENST00000339950 K7ERS5 55 aa7.16□□□□□ -1.26
USP1-201ENST00000339950 IGLV7-43P04211 117 aa7.15□□□□□ -1.26
USP1-201ENST00000339950 IGLV7-46A0A075B6I9 117 aa7.14□□□□□ -1.27
USP1-201ENST00000339950 LINC00313P59037 77 aa7.14□□□□□ -1.27
USP1-201ENST00000339950 MIR22HGQ0VDD5 57 aa7.14□□□□□ -1.27
USP1-201ENST00000339950 UQCR11O14957 56 aa7.14□□□□□ -1.27
USP1-201ENST00000339950 Q75L30 129 aa7.14□□□□□ -1.27
USP1-201ENST00000339950 PLA2G1BP04054 148 aaKnown RBP7.13□□□□□ -1.27
USP1-201ENST00000339950 WWC2-AS2Q96NR7 200 aa7.13□□□□□ -1.27
USP1-201ENST00000339950 HRES1P13985 223 aa7.12□□□□□ -1.27
USP1-201ENST00000339950 LYSTQ99698 3801 aa7.12□□□□□ -1.27
USP1-201ENST00000339950 LCE6AA0A183 80 aa7.11□□□□□ -1.27
USP1-201ENST00000339950 C9orf92A6NGG3 77 aa7.11□□□□□ -1.27
USP1-201ENST00000339950 Q96NJ1 140 aa7.11□□□□□ -1.27
USP1-201ENST00000339950 Q6ZRN7 208 aaPredicted RBP7.1□□□□□ -1.27
USP1-201ENST00000339950 SPRR1BP22528 89 aa7.1□□□□□ -1.27
USP1-201ENST00000339950 Q5W150 140 aa7.09□□□□□ -1.27
USP1-201ENST00000339950 H3BS24 57 aa7.09□□□□□ -1.27
USP1-201ENST00000339950 Q8N1X5 172 aa7.09□□□□□ -1.27
USP1-201ENST00000339950 TYMSOSQ8TAI1 123 aa7.08□□□□□ -1.28
USP1-201ENST00000339950 ADM2Q7Z4H4 148 aa7.07□□□□□ -1.28
USP1-201ENST00000339950 SSBP3-AS1Q7Z2R9 100 aa7.07□□□□□ -1.28
USP1-201ENST00000339950 HUWE1Q7Z6Z7 4374 aaKnown RBP7.06□□□□□ -1.28
USP1-201ENST00000339950 CRIPTQ9P021 101 aa7.05□□□□□ -1.28
USP1-201ENST00000339950 LINC01558Q9Y6Z2 57 aa7.05□□□□□ -1.28
USP1-201ENST00000339950 LINC01554Q52M75 96 aa7.03□□□□□ -1.28
USP1-201ENST00000339950 KRTAP10-1P60331 282 aa7.03□□□□□ -1.28
USP1-201ENST00000339950 FAM229AH3BQW9 127 aa7.02□□□□□ -1.28
USP1-201ENST00000339950 CSAG1Q6PB30 78 aa7.01□□□□□ -1.29
USP1-201ENST00000339950 PLAC8Q9NZF1 115 aa7.01□□□□□ -1.29
USP1-201ENST00000339950 KRTAP13-1Q8IUC0 172 aa6.99□□□□□ -1.29
USP1-201ENST00000339950 SPINT4Q6UDR6 99 aa6.96□□□□□ -1.3
USP1-201ENST00000339950 Q6ZR54 194 aa6.94□□□□□ -1.3
USP1-201ENST00000339950 A6NN06 94 aa6.94□□□□□ -1.3
USP1-201ENST00000339950 PLECQ15149 4684 aaKnown RBP6.93□□□□□ -1.3
USP1-201ENST00000339950 LINC00483Q53H64 154 aa6.91□□□□□ -1.3
USP1-201ENST00000339950 A0A0D9SG42 100 aa6.9□□□□□ -1.3
USP1-201ENST00000339950 KRTAP13-2Q52LG2 175 aa6.89□□□□□ -1.31
USP1-201ENST00000339950 LINC00304Q8N9R0 145 aa6.88□□□□□ -1.31
USP1-201ENST00000339950 DNAH9Q9NYC9 4486 aa6.88□□□□□ -1.31
USP1-201ENST00000339950 DNAH7Q8WXX0 4024 aa6.81□□□□□ -1.32
USP1-201ENST00000339950 CMYA5Q8N3K9 4069 aa6.81□□□□□ -1.32
USP1-201ENST00000339950 DNHD1Q96M86 4753 aa6.79□□□□□ -1.32
USP1-201ENST00000339950 KMT2AQ03164 3969 aa6.78□□□□□ -1.32
USP1-201ENST00000339950 STARD9Q9P2P6 4700 aa6.77□□□□□ -1.32
USP1-201ENST00000339950 DNAH11Q96DT5 4516 aa6.77□□□□□ -1.33
USP1-201ENST00000339950 PRKDCP78527 4128 aaKnown RBP6.77□□□□□ -1.33
USP1-201ENST00000339950 A0A1B0GU33 70 aa6.76□□□□□ -1.33
USP1-201ENST00000339950 ASB16-AS1Q495Z4 193 aa6.76□□□□□ -1.33
USP1-201ENST00000339950 DMAC1Q96GE9 116 aa6.73□□□□□ -1.33
USP1-201ENST00000339950 FRAS1Q86XX4 4008 aa6.73□□□□□ -1.33
USP1-201ENST00000339950 DNAH1Q9P2D7 4330 aa6.72□□□□□ -1.33
USP1-201ENST00000339950 SPATA8Q6RVD6 105 aa6.72□□□□□ -1.33
USP1-201ENST00000339950 DNAH8Q96JB1 4490 aa6.69□□□□□ -1.34
USP1-201ENST00000339950 KRTAP1-4P0C5Y4 121 aa6.66□□□□□ -1.34
USP1-201ENST00000339950 KRTAP13-3Q3SY46 172 aa6.6□□□□□ -1.35
USP1-201ENST00000339950 DNAH3Q8TD57 4116 aa6.6□□□□□ -1.35
USP1-201ENST00000339950 LRP1BQ9NZR2 4599 aa6.59□□□□□ -1.36
USP1-201ENST00000339950 FAT1Q14517 4588 aa6.57□□□□□ -1.36
USP1-201ENST00000339950 DNAH6Q9C0G6 4158 aa6.56□□□□□ -1.36
USP1-201ENST00000339950 DNAH17Q9UFH2 4485 aa6.56□□□□□ -1.36
USP1-201ENST00000339950 VPS13DQ5THJ4 4388 aa6.54□□□□□ -1.36
USP1-201ENST00000339950 Q6ZSA8 131 aa6.53□□□□□ -1.36
USP1-201ENST00000339950 KRTAP16-1A8MUX0 517 aa6.53□□□□□ -1.36
USP1-201ENST00000339950 KRTAP25-1Q3LHN0 102 aa6.5□□□□□ -1.37
USP1-201ENST00000339950 DNAH2Q9P225 4427 aa6.5□□□□□ -1.37
USP1-201ENST00000339950 H1FX-AS1Q4G0G2 97 aa6.48□□□□□ -1.37
USP1-201ENST00000339950 ROMO1P60602 79 aa6.47□□□□□ -1.37
USP1-201ENST00000339950 MYCBP2O75592 4640 aa6.47□□□□□ -1.37
USP1-201ENST00000339950 DNAH5Q8TE73 4624 aa6.47□□□□□ -1.37
USP1-201ENST00000339950 Q5VSD8 79 aa6.46□□□□□ -1.37
USP1-201ENST00000339950 NDUFAF8A1L188 74 aa6.44□□□□□ -1.38
USP1-201ENST00000339950 A8MUU9 505 aa6.43□□□□□ -1.38
USP1-201ENST00000339950 RPL37P61927 97 aaKnown RBP6.43□□□□□ -1.38
USP1-201ENST00000339950 HECTD4Q9Y4D8 3996 aa6.42□□□□□ -1.38
USP1-201ENST00000339950 HYDINQ4G0P3 5121 aa6.4□□□□□ -1.38
USP1-201ENST00000339950 C10orf95Q9H7T3 257 aa6.38□□□□□ -1.39
USP1-201ENST00000339950 H0YAA0 97 aa6.38□□□□□ -1.39
USP1-201ENST00000339950 VPS13BQ7Z7G8 4022 aa6.36□□□□□ -1.39
USP1-201ENST00000339950 COX6B2Q6YFQ2 88 aa6.35□□□□□ -1.39
USP1-201ENST00000339950 PKHD1P08F94 4074 aa6.33□□□□□ -1.4
USP1-201ENST00000339950 KRTAP3-1Q9BYR8 98 aa6.3□□□□□ -1.4
USP1-201ENST00000339950 S4R3F8 94 aa6.3□□□□□ -1.4
USP1-201ENST00000339950 DYNC2H1Q8NCM8 4307 aaKnown RBP6.28□□□□□ -1.4
USP1-201ENST00000339950 C20orf166-AS1Q96NR2 134 aa6.28□□□□□ -1.4
USP1-201ENST00000339950 FAT3Q8TDW7 4589 aa6.27□□□□□ -1.41
USP1-201ENST00000339950 DYNC1H1Q14204 4646 aaKnown RBP6.27□□□□□ -1.41
USP1-201ENST00000339950 LRP1Q07954 4544 aaKnown RBP6.26□□□□□ -1.41
USP1-201ENST00000339950 LUZP6Q538Z0 58 aa6.25□□□□□ -1.41
USP1-201ENST00000339950 J3QL48 77 aa6.25□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 174.2 ms