RNA–Protein interactions for RNA: ENST00000335508.10

SF3B1-201, Transcript of splicing factor 3b subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B1, Length 6,526 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-201ENST00000335508 C9orf92A6NGG3 77 aa4.12□□□□□ -1.75
SF3B1-201ENST00000335508 RPS29P62273 56 aaKnown RBP4.12□□□□□ -1.75
SF3B1-201ENST00000335508 SPANXA2-OT1Q8N9U9 137 aa4.12□□□□□ -1.75
SF3B1-201ENST00000335508 MEGF8Q7Z7M0 2845 aa4.11□□□□□ -1.75
SF3B1-201ENST00000335508 ASB16-AS1Q495Z4 193 aa4.11□□□□□ -1.75
SF3B1-201ENST00000335508 KRTAP13-1Q8IUC0 172 aa4.11□□□□□ -1.75
SF3B1-201ENST00000335508 Q5VSD8 79 aa4.1□□□□□ -1.75
SF3B1-201ENST00000335508 MMP24-AS1A0A0U1RRL7 71 aa4.09□□□□□ -1.75
SF3B1-201ENST00000335508 DMDP11532 3685 aa4.09□□□□□ -1.76
SF3B1-201ENST00000335508 A0A1B0GU69 56 aa4.08□□□□□ -1.76
SF3B1-201ENST00000335508 M0R2T5 61 aa4.08□□□□□ -1.76
SF3B1-201ENST00000335508 KRTAP7-1Q8IUC3 87 aa4.08□□□□□ -1.76
SF3B1-201ENST00000335508 H7BZZ5 65 aa4.07□□□□□ -1.76
SF3B1-201ENST00000335508 CRIPTQ9P021 101 aa4.07□□□□□ -1.76
SF3B1-201ENST00000335508 ZFHX3Q15911 3703 aa4.07□□□□□ -1.76
SF3B1-201ENST00000335508 CDC42SE1Q9NRR8 79 aa4.06□□□□□ -1.76
SF3B1-201ENST00000335508 COL7A1Q02388 2944 aa4.06□□□□□ -1.76
SF3B1-201ENST00000335508 CYP4F30PQ9H0H9 118 aa4.04□□□□□ -1.76
SF3B1-201ENST00000335508 A0A087X002 238 aa4.04□□□□□ -1.76
SF3B1-201ENST00000335508 ZCCHC13Q8WW36 166 aaKnown RBP4.03□□□□□ -1.76
SF3B1-201ENST00000335508 NDUFAF8A1L188 74 aa4.03□□□□□ -1.76
SF3B1-201ENST00000335508 KRTAP11-1Q8IUC1 163 aa4.02□□□□□ -1.77
SF3B1-201ENST00000335508 Q8N1X5 172 aa4.02□□□□□ -1.77
SF3B1-201ENST00000335508 KRTAP29-1A8MX34 341 aaPredicted RBP4.01□□□□□ -1.77
SF3B1-201ENST00000335508 COA5Q86WW8 74 aa4□□□□□ -1.77
SF3B1-201ENST00000335508 ZFHX4Q86UP3 3567 aa3.99□□□□□ -1.77
SF3B1-201ENST00000335508 A8MU10 97 aa3.99□□□□□ -1.77
SF3B1-201ENST00000335508 UQCR11O14957 56 aa3.98□□□□□ -1.77
SF3B1-201ENST00000335508 SPINK7P58062 85 aa3.98□□□□□ -1.77
SF3B1-201ENST00000335508 KRTAP13-2Q52LG2 175 aa3.98□□□□□ -1.77
SF3B1-201ENST00000335508 Q75L30 129 aa3.97□□□□□ -1.77
SF3B1-201ENST00000335508 HRES1P13985 223 aa3.96□□□□□ -1.78
SF3B1-201ENST00000335508 Q8N9P0 234 aaPredicted RBP3.96□□□□□ -1.78
SF3B1-201ENST00000335508 Q1T7F1 81 aa3.95□□□□□ -1.78
SF3B1-201ENST00000335508 Q5W150 140 aa3.95□□□□□ -1.78
SF3B1-201ENST00000335508 LAMA5O15230 3695 aa3.95□□□□□ -1.78
SF3B1-201ENST00000335508 KRTAP1-4P0C5Y4 121 aa3.93□□□□□ -1.78
SF3B1-201ENST00000335508 Q5VV11 94 aa3.93□□□□□ -1.78
SF3B1-201ENST00000335508 A0A0D9SG42 100 aa3.93□□□□□ -1.78
SF3B1-201ENST00000335508 SMG1Q96Q15 3661 aaKnown RBP3.9□□□□□ -1.79
SF3B1-201ENST00000335508 DMAC1Q96GE9 116 aa3.88□□□□□ -1.79
SF3B1-201ENST00000335508 A6NN06 94 aa3.88□□□□□ -1.79
SF3B1-201ENST00000335508 ASPMQ8IZT6 3477 aa3.87□□□□□ -1.79
SF3B1-201ENST00000335508 WDFY3Q8IZQ1 3526 aa3.86□□□□□ -1.79
SF3B1-201ENST00000335508 NOTCH2NLQ7Z3S9 236 aa3.86□□□□□ -1.79
SF3B1-201ENST00000335508 A8MUU9 505 aa3.86□□□□□ -1.79
SF3B1-201ENST00000335508 CAMK2N1Q7Z7J9 78 aa3.85□□□□□ -1.79
SF3B1-201ENST00000335508 A0A1B0GVY2 172 aa3.85□□□□□ -1.79
SF3B1-201ENST00000335508 LINC01558Q9Y6Z2 57 aa3.84□□□□□ -1.79
SF3B1-201ENST00000335508 C20orf166-AS1Q96NR2 134 aa3.84□□□□□ -1.79
SF3B1-201ENST00000335508 DNHD1Q96M86 4753 aa3.83□□□□□ -1.8
SF3B1-201ENST00000335508 RPL37P61927 97 aaKnown RBP3.83□□□□□ -1.8
SF3B1-201ENST00000335508 ROMO1P60602 79 aa3.82□□□□□ -1.8
SF3B1-201ENST00000335508 A0A1B0GU33 70 aa3.81□□□□□ -1.8
SF3B1-201ENST00000335508 KRTAP10-8P60410 259 aa3.8□□□□□ -1.8
SF3B1-201ENST00000335508 TPRXLQ17RH7 258 aa3.8□□□□□ -1.8
SF3B1-201ENST00000335508 KRTAP25-1Q3LHN0 102 aa3.78□□□□□ -1.8
SF3B1-201ENST00000335508 S4R3F8 94 aa3.76□□□□□ -1.81
SF3B1-201ENST00000335508 R4GN34 69 aa3.76□□□□□ -1.81
SF3B1-201ENST00000335508 H1FX-AS1Q4G0G2 97 aa3.75□□□□□ -1.81
SF3B1-201ENST00000335508 CSMD2Q7Z408 3487 aa3.73□□□□□ -1.81
SF3B1-201ENST00000335508 XP32Q5T750 250 aa3.72□□□□□ -1.81
SF3B1-201ENST00000335508 BSNQ9UPA5 3926 aa3.71□□□□□ -1.82
SF3B1-201ENST00000335508 CSMD1Q96PZ7 3565 aa3.71□□□□□ -1.82
SF3B1-201ENST00000335508 KIAA1109Q2LD37 5005 aa3.71□□□□□ -1.82
SF3B1-201ENST00000335508 KRTAP13-3Q3SY46 172 aa3.7□□□□□ -1.82
SF3B1-201ENST00000335508 TRRAPQ9Y4A5 3859 aa3.69□□□□□ -1.82
SF3B1-201ENST00000335508 PLAC4Q8WY50 150 aa3.69□□□□□ -1.82
SF3B1-201ENST00000335508 M0QZ58 72 aa3.67□□□□□ -1.82
SF3B1-201ENST00000335508 NBPF19A0A087WUL8 3843 aa3.67□□□□□ -1.82
SF3B1-201ENST00000335508 RYR1P21817 5038 aa3.63□□□□□ -1.83
SF3B1-201ENST00000335508 HYDINQ4G0P3 5121 aa3.63□□□□□ -1.83
SF3B1-201ENST00000335508 SPATA8Q6RVD6 105 aa3.61□□□□□ -1.83
SF3B1-201ENST00000335508 ANK3Q12955 4377 aaKnown RBP3.59□□□□□ -1.84
SF3B1-201ENST00000335508 KRTAP10-4P60372 401 aaPredicted RBP3.58□□□□□ -1.84
SF3B1-201ENST00000335508 MT1HL1P0DM35 61 aa3.57□□□□□ -1.84
SF3B1-201ENST00000335508 SPENQ96T58 3664 aaKnown RBP3.57□□□□□ -1.84
SF3B1-201ENST00000335508 AKAP9Q99996 3911 aa3.57□□□□□ -1.84
SF3B1-201ENST00000335508 CUBNO60494 3623 aa3.55□□□□□ -1.84
SF3B1-201ENST00000335508 P0C880 135 aa3.52□□□□□ -1.85
SF3B1-201ENST00000335508 PLECQ15149 4684 aaKnown RBP3.51□□□□□ -1.85
SF3B1-201ENST00000335508 C10orf95Q9H7T3 257 aa3.49□□□□□ -1.85
SF3B1-201ENST00000335508 H0YAA0 97 aa3.46□□□□□ -1.86
SF3B1-201ENST00000335508 DNAH5Q8TE73 4624 aa3.46□□□□□ -1.86
SF3B1-201ENST00000335508 SVEP1Q4LDE5 3571 aa3.45□□□□□ -1.86
SF3B1-201ENST00000335508 ZNF469Q96JG9 3925 aaPredicted RBP3.43□□□□□ -1.86
SF3B1-201ENST00000335508 DNAH11Q96DT5 4516 aa3.42□□□□□ -1.86
SF3B1-201ENST00000335508 TNP1P09430 55 aa3.41□□□□□ -1.86
SF3B1-201ENST00000335508 RYR3Q15413 4870 aa3.39□□□□□ -1.87
SF3B1-201ENST00000335508 PCLOQ9Y6V0 5065 aa3.39□□□□□ -1.87
SF3B1-201ENST00000335508 KRTAP10-10P60014 251 aa3.38□□□□□ -1.87
SF3B1-201ENST00000335508 PP632Q6XCG6 107 aa3.37□□□□□ -1.87
SF3B1-201ENST00000335508 HERC2O95714 4834 aa3.36□□□□□ -1.87
SF3B1-201ENST00000335508 KRTAP3-1Q9BYR8 98 aa3.36□□□□□ -1.87
SF3B1-201ENST00000335508 ANK2Q01484 3957 aa3.36□□□□□ -1.87
SF3B1-201ENST00000335508 KRTAP4-5Q9BYR2 181 aa3.36□□□□□ -1.87
SF3B1-201ENST00000335508 KRTAP23-1A1A580 65 aa3.36□□□□□ -1.87
SF3B1-201ENST00000335508 DYNC1H1Q14204 4646 aaKnown RBP3.35□□□□□ -1.87
SF3B1-201ENST00000335508 BIRC6Q9NR09 4857 aa3.34□□□□□ -1.88
SF3B1-201ENST00000335508 PRO2289Q9P1D8 64 aa3.33□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms