RNA–Protein interactions for RNA: ENST00000326956.11

SSBP3-201, Transcript of single stranded DNA binding protein 3, humanhuman

TSL 2

Gene SSBP3, Length 2,913 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP3-201ENST00000326956 CSMD3Q7Z407 3707 aa8.73□□□□□ -1.01
SSBP3-201ENST00000326956 NUPR2A6NF83 97 aa8.72□□□□□ -1.01
SSBP3-201ENST00000326956 A0A087X002 238 aa8.72□□□□□ -1.01
SSBP3-201ENST00000326956 NOTCH2NLQ7Z3S9 236 aa8.72□□□□□ -1.01
SSBP3-201ENST00000326956 IGLV5-52A0A0A0MRZ9 124 aa8.71□□□□□ -1.01
SSBP3-201ENST00000326956 ZNF861PO60384 105 aa8.71□□□□□ -1.01
SSBP3-201ENST00000326956 DNAH9Q9NYC9 4486 aa8.7□□□□□ -1.02
SSBP3-201ENST00000326956 LYSTQ99698 3801 aa8.69□□□□□ -1.02
SSBP3-201ENST00000326956 A0A087WTM6 91 aa8.69□□□□□ -1.02
SSBP3-201ENST00000326956 RTL8CO15255 209 aa8.68□□□□□ -1.02
SSBP3-201ENST00000326956 COL7A1Q02388 2944 aa8.68□□□□□ -1.02
SSBP3-201ENST00000326956 PLAC8Q9NZF1 115 aa8.67□□□□□ -1.02
SSBP3-201ENST00000326956 CIRBP-AS1Q8TBR5 109 aa8.67□□□□□ -1.02
SSBP3-201ENST00000326956 C8orf87E5RJ46 101 aa8.66□□□□□ -1.02
SSBP3-201ENST00000326956 SPINK7P58062 85 aa8.66□□□□□ -1.02
SSBP3-201ENST00000326956 A6NN06 94 aa8.64□□□□□ -1.03
SSBP3-201ENST00000326956 ACYP2P14621 99 aa8.64□□□□□ -1.03
SSBP3-201ENST00000326956 Q5W150 140 aa8.64□□□□□ -1.03
SSBP3-201ENST00000326956 C7orf65Q6ZTY9 151 aa8.58□□□□□ -1.04
SSBP3-201ENST00000326956 IGLV7-43P04211 117 aa8.57□□□□□ -1.04
SSBP3-201ENST00000326956 KRTAP13-3Q3SY46 172 aa8.55□□□□□ -1.04
SSBP3-201ENST00000326956 RETNLBQ9BQ08 111 aa8.55□□□□□ -1.04
SSBP3-201ENST00000326956 LINC00313P59037 77 aa8.54□□□□□ -1.04
SSBP3-201ENST00000326956 SSBP3-AS1Q7Z2R9 100 aa8.54□□□□□ -1.04
SSBP3-201ENST00000326956 FAM229AH3BQW9 127 aa8.53□□□□□ -1.04
SSBP3-201ENST00000326956 DNAH7Q8WXX0 4024 aa8.51□□□□□ -1.05
SSBP3-201ENST00000326956 DMAC1Q96GE9 116 aa8.51□□□□□ -1.05
SSBP3-201ENST00000326956 A0A1B0GU69 56 aa8.5□□□□□ -1.05
SSBP3-201ENST00000326956 PLECQ15149 4684 aaKnown RBP8.49□□□□□ -1.05
SSBP3-201ENST00000326956 C1orf134Q5TEV5 83 aa8.48□□□□□ -1.05
SSBP3-201ENST00000326956 DYNC2H1Q8NCM8 4307 aaKnown RBP8.45□□□□□ -1.06
SSBP3-201ENST00000326956 IGKV2-30P06310 120 aa8.43□□□□□ -1.06
SSBP3-201ENST00000326956 DNAH8Q96JB1 4490 aa8.41□□□□□ -1.06
SSBP3-201ENST00000326956 IGKV2D-30A0A075B6S6 120 aa8.4□□□□□ -1.06
SSBP3-201ENST00000326956 FRAS1Q86XX4 4008 aa8.37□□□□□ -1.07
SSBP3-201ENST00000326956 TGP01266 2768 aa8.37□□□□□ -1.07
SSBP3-201ENST00000326956 UQCR11O14957 56 aa8.36□□□□□ -1.07
SSBP3-201ENST00000326956 LY6G6CO95867 125 aa8.36□□□□□ -1.07
SSBP3-201ENST00000326956 MIR22HGQ0VDD5 57 aa8.35□□□□□ -1.07
SSBP3-201ENST00000326956 VPS13DQ5THJ4 4388 aa8.34□□□□□ -1.07
SSBP3-201ENST00000326956 KRTAP13-2Q52LG2 175 aa8.34□□□□□ -1.07
SSBP3-201ENST00000326956 SPATA8Q6RVD6 105 aa8.34□□□□□ -1.07
SSBP3-201ENST00000326956 HECTD4Q9Y4D8 3996 aa8.33□□□□□ -1.08
SSBP3-201ENST00000326956 PRAC1Q96KF2 57 aa8.33□□□□□ -1.08
SSBP3-201ENST00000326956 MEGF8Q7Z7M0 2845 aa8.33□□□□□ -1.08
SSBP3-201ENST00000326956 STARD9Q9P2P6 4700 aa8.3□□□□□ -1.08
SSBP3-201ENST00000326956 KRTAP16-1A8MUX0 517 aa8.29□□□□□ -1.08
SSBP3-201ENST00000326956 DNAH17Q9UFH2 4485 aa8.29□□□□□ -1.08
SSBP3-201ENST00000326956 ALMS1Q8TCU4 4167 aa8.29□□□□□ -1.08
SSBP3-201ENST00000326956 KRTAP10-2P60368 255 aa8.29□□□□□ -1.08
SSBP3-201ENST00000326956 PLA2G1BP04054 148 aaKnown RBP8.28□□□□□ -1.08
SSBP3-201ENST00000326956 A0A0A0MQY5 61 aa8.27□□□□□ -1.09
SSBP3-201ENST00000326956 FBN3Q75N90 2809 aa8.26□□□□□ -1.09
SSBP3-201ENST00000326956 ADM2Q7Z4H4 148 aa8.26□□□□□ -1.09
SSBP3-201ENST00000326956 PRKDCP78527 4128 aaKnown RBP8.25□□□□□ -1.09
SSBP3-201ENST00000326956 SPINK1P00995 79 aa8.25□□□□□ -1.09
SSBP3-201ENST00000326956 KMT2AQ03164 3969 aa8.23□□□□□ -1.09
SSBP3-201ENST00000326956 TYMSOSQ8TAI1 123 aa8.21□□□□□ -1.09
SSBP3-201ENST00000326956 DNAH2Q9P225 4427 aa8.21□□□□□ -1.1
SSBP3-201ENST00000326956 KRTAP10-1P60331 282 aa8.19□□□□□ -1.1
SSBP3-201ENST00000326956 LINC01554Q52M75 96 aa8.19□□□□□ -1.1
SSBP3-201ENST00000326956 Q8N1X5 172 aa8.19□□□□□ -1.1
SSBP3-201ENST00000326956 KRTAP1-4P0C5Y4 121 aa8.18□□□□□ -1.1
SSBP3-201ENST00000326956 Q6ZSA8 131 aa8.15□□□□□ -1.1
SSBP3-201ENST00000326956 DNAH11Q96DT5 4516 aa8.11□□□□□ -1.11
SSBP3-201ENST00000326956 DNAH6Q9C0G6 4158 aa8.08□□□□□ -1.12
SSBP3-201ENST00000326956 LINC00304Q8N9R0 145 aa8.08□□□□□ -1.12
SSBP3-201ENST00000326956 DNHD1Q96M86 4753 aa8.07□□□□□ -1.12
SSBP3-201ENST00000326956 CSAG1Q6PB30 78 aa8.07□□□□□ -1.12
SSBP3-201ENST00000326956 DNAH5Q8TE73 4624 aa8.03□□□□□ -1.12
SSBP3-201ENST00000326956 LRP1BQ9NZR2 4599 aa8□□□□□ -1.13
SSBP3-201ENST00000326956 C9orf92A6NGG3 77 aa7.99□□□□□ -1.13
SSBP3-201ENST00000326956 RPS29P62273 56 aaKnown RBP7.98□□□□□ -1.13
SSBP3-201ENST00000326956 A0A1B0GU33 70 aa7.96□□□□□ -1.13
SSBP3-201ENST00000326956 H0YAA0 97 aa7.95□□□□□ -1.14
SSBP3-201ENST00000326956 A8MUU9 505 aa7.9□□□□□ -1.14
SSBP3-201ENST00000326956 VPS13BQ7Z7G8 4022 aa7.9□□□□□ -1.14
SSBP3-201ENST00000326956 C20orf166-AS1Q96NR2 134 aa7.9□□□□□ -1.15
SSBP3-201ENST00000326956 H1FX-AS1Q4G0G2 97 aa7.89□□□□□ -1.15
SSBP3-201ENST00000326956 SMR3BP02814 79 aaPredicted RBP7.88□□□□□ -1.15
SSBP3-201ENST00000326956 K7ERS5 55 aa7.87□□□□□ -1.15
SSBP3-201ENST00000326956 KRTAP3-1Q9BYR8 98 aa7.85□□□□□ -1.15
SSBP3-201ENST00000326956 PKD1P98161 4303 aa7.82□□□□□ -1.16
SSBP3-201ENST00000326956 HYDINQ4G0P3 5121 aa7.81□□□□□ -1.16
SSBP3-201ENST00000326956 KRTAP25-1Q3LHN0 102 aa7.81□□□□□ -1.16
SSBP3-201ENST00000326956 FAT2Q9NYQ8 4349 aa7.8□□□□□ -1.16
SSBP3-201ENST00000326956 COX6B2Q6YFQ2 88 aa7.78□□□□□ -1.16
SSBP3-201ENST00000326956 KRTAP21-3Q3LHN1 58 aa7.77□□□□□ -1.17
SSBP3-201ENST00000326956 FLG2Q5D862 2391 aaPredicted RBP7.76□□□□□ -1.17
SSBP3-201ENST00000326956 CRIPTQ9P021 101 aa7.68□□□□□ -1.18
SSBP3-201ENST00000326956 DMBT1Q9UGM3 2413 aaPredicted RBP7.66□□□□□ -1.18
SSBP3-201ENST00000326956 PKHD1P08F94 4074 aa7.63□□□□□ -1.19
SSBP3-201ENST00000326956 SACSQ9NZJ4 4579 aa7.63□□□□□ -1.19
SSBP3-201ENST00000326956 ROMO1P60602 79 aa7.62□□□□□ -1.19
SSBP3-201ENST00000326956 RPL37P61927 97 aaKnown RBP7.61□□□□□ -1.19
SSBP3-201ENST00000326956 A0A0D9SG42 100 aa7.6□□□□□ -1.19
SSBP3-201ENST00000326956 KRTAP10-4P60372 401 aaPredicted RBP7.59□□□□□ -1.19
SSBP3-201ENST00000326956 FAT1Q14517 4588 aa7.54□□□□□ -1.2
SSBP3-201ENST00000326956 DYNC1H1Q14204 4646 aaKnown RBP7.53□□□□□ -1.2
SSBP3-201ENST00000326956 KRTAP10-6P60371 365 aaPredicted RBP7.52□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 10.1 ms