RNA–Protein interactions for RNA: ENST00000322213.8

SMC1A-201, Transcript of structural maintenance of chromosomes 1A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMC1A, Length 9,784 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1A-201ENST00000322213 OTOGQ6ZRI0 2925 aa4.41□□□□□ -1.7
SMC1A-201ENST00000322213 CUBNO60494 3623 aa4.41□□□□□ -1.7
SMC1A-201ENST00000322213 SPRR1AP35321 89 aa4.4□□□□□ -1.7
SMC1A-201ENST00000322213 A8MU10 97 aa4.4□□□□□ -1.71
SMC1A-201ENST00000322213 KRTAP16-1A8MUX0 517 aa4.39□□□□□ -1.71
SMC1A-201ENST00000322213 CSMD2Q7Z408 3487 aa4.39□□□□□ -1.71
SMC1A-201ENST00000322213 Q8N1X5 172 aa4.39□□□□□ -1.71
SMC1A-201ENST00000322213 MEGF8Q7Z7M0 2845 aa4.38□□□□□ -1.71
SMC1A-201ENST00000322213 A0A0D9SG42 100 aa4.37□□□□□ -1.71
SMC1A-201ENST00000322213 ROMO1P60602 79 aa4.37□□□□□ -1.71
SMC1A-201ENST00000322213 LINC00304Q8N9R0 145 aa4.36□□□□□ -1.71
SMC1A-201ENST00000322213 SPATA8Q6RVD6 105 aa4.36□□□□□ -1.71
SMC1A-201ENST00000322213 PSORS1C2Q9UIG4 136 aa4.36□□□□□ -1.71
SMC1A-201ENST00000322213 IGLV7-43P04211 117 aa4.35□□□□□ -1.71
SMC1A-201ENST00000322213 TNP2Q05952 138 aa4.34□□□□□ -1.71
SMC1A-201ENST00000322213 Q5W150 140 aa4.34□□□□□ -1.72
SMC1A-201ENST00000322213 A0A0A0MQY5 61 aa4.33□□□□□ -1.72
SMC1A-201ENST00000322213 KRTAP10-11P60412 298 aa4.32□□□□□ -1.72
SMC1A-201ENST00000322213 ANAPC11Q9NYG5 84 aa4.32□□□□□ -1.72
SMC1A-201ENST00000322213 KRTAP29-1A8MX34 341 aaPredicted RBP4.32□□□□□ -1.72
SMC1A-201ENST00000322213 SPRR1BP22528 89 aa4.3□□□□□ -1.72
SMC1A-201ENST00000322213 CASC10Q5T4H9 136 aa4.3□□□□□ -1.72
SMC1A-201ENST00000322213 KRTAP4-16G5E9R7 235 aaPredicted RBP4.3□□□□□ -1.72
SMC1A-201ENST00000322213 ADM2Q7Z4H4 148 aa4.3□□□□□ -1.72
SMC1A-201ENST00000322213 C9orf92A6NGG3 77 aa4.29□□□□□ -1.72
SMC1A-201ENST00000322213 KRTAP26-1Q6PEX3 210 aa4.29□□□□□ -1.72
SMC1A-201ENST00000322213 KRTAP25-1Q3LHN0 102 aa4.29□□□□□ -1.72
SMC1A-201ENST00000322213 A0A087WTM6 91 aa4.28□□□□□ -1.72
SMC1A-201ENST00000322213 LINC00483Q53H64 154 aa4.27□□□□□ -1.73
SMC1A-201ENST00000322213 KRTAP10-3P60369 221 aa4.25□□□□□ -1.73
SMC1A-201ENST00000322213 H1FX-AS1Q4G0G2 97 aa4.25□□□□□ -1.73
SMC1A-201ENST00000322213 RPL37P61927 97 aaKnown RBP4.23□□□□□ -1.73
SMC1A-201ENST00000322213 SEC61BP60468 96 aaKnown RBP4.22□□□□□ -1.73
SMC1A-201ENST00000322213 NDUFAF8A1L188 74 aa4.22□□□□□ -1.73
SMC1A-201ENST00000322213 TRRAPQ9Y4A5 3859 aa4.21□□□□□ -1.74
SMC1A-201ENST00000322213 S4R3F8 94 aa4.21□□□□□ -1.74
SMC1A-201ENST00000322213 NOTCH2NLQ7Z3S9 236 aa4.21□□□□□ -1.74
SMC1A-201ENST00000322213 FBN3Q75N90 2809 aa4.2□□□□□ -1.74
SMC1A-201ENST00000322213 K7EIL1 84 aa4.2□□□□□ -1.74
SMC1A-201ENST00000322213 WWC2-AS2Q96NR7 200 aa4.19□□□□□ -1.74
SMC1A-201ENST00000322213 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP4.19□□□□□ -1.74
SMC1A-201ENST00000322213 KRTAP1-3Q8IUG1 177 aa4.19□□□□□ -1.74
SMC1A-201ENST00000322213 PLAC8Q9NZF1 115 aa4.18□□□□□ -1.74
SMC1A-201ENST00000322213 KRTAP24-1Q3LI83 254 aa4.16□□□□□ -1.74
SMC1A-201ENST00000322213 A8MUU9 505 aa4.16□□□□□ -1.74
SMC1A-201ENST00000322213 C20orf166-AS1Q96NR2 134 aa4.15□□□□□ -1.75
SMC1A-201ENST00000322213 COX6B2Q6YFQ2 88 aa4.15□□□□□ -1.75
SMC1A-201ENST00000322213 PANO1I0J062 215 aa4.14□□□□□ -1.75
SMC1A-201ENST00000322213 KRTAP1-1Q07627 177 aa4.14□□□□□ -1.75
SMC1A-201ENST00000322213 CSMD3Q7Z407 3707 aa4.12□□□□□ -1.75
SMC1A-201ENST00000322213 LYSTQ99698 3801 aa4.11□□□□□ -1.75
SMC1A-201ENST00000322213 ZNF469Q96JG9 3925 aaPredicted RBP4.11□□□□□ -1.75
SMC1A-201ENST00000322213 CAMK2N1Q7Z7J9 78 aa4.09□□□□□ -1.75
SMC1A-201ENST00000322213 ALMS1Q8TCU4 4167 aa4.09□□□□□ -1.76
SMC1A-201ENST00000322213 J3QL48 77 aa4.08□□□□□ -1.76
SMC1A-201ENST00000322213 KRTAP1-5Q9BYS1 174 aa4.06□□□□□ -1.76
SMC1A-201ENST00000322213 R4GN34 69 aa4.06□□□□□ -1.76
SMC1A-201ENST00000322213 KRTAP11-1Q8IUC1 163 aa4.06□□□□□ -1.76
SMC1A-201ENST00000322213 Q6ZSA8 131 aa4.02□□□□□ -1.77
SMC1A-201ENST00000322213 RPS29P62273 56 aaKnown RBP4.01□□□□□ -1.77
SMC1A-201ENST00000322213 KRTAP13-1Q8IUC0 172 aa4□□□□□ -1.77
SMC1A-201ENST00000322213 M0QZ58 72 aa4□□□□□ -1.77
SMC1A-201ENST00000322213 KRTAP7-1Q8IUC3 87 aa4□□□□□ -1.77
SMC1A-201ENST00000322213 SMR3BP02814 79 aaPredicted RBP3.99□□□□□ -1.77
SMC1A-201ENST00000322213 HECTD4Q9Y4D8 3996 aa3.99□□□□□ -1.77
SMC1A-201ENST00000322213 H0YAA0 97 aa3.99□□□□□ -1.77
SMC1A-201ENST00000322213 CMYA5Q8N3K9 4069 aa3.95□□□□□ -1.78
SMC1A-201ENST00000322213 PLAC4Q8WY50 150 aa3.93□□□□□ -1.78
SMC1A-201ENST00000322213 ANK2Q01484 3957 aa3.92□□□□□ -1.78
SMC1A-201ENST00000322213 KRTAP21-3Q3LHN1 58 aa3.91□□□□□ -1.78
SMC1A-201ENST00000322213 PP632Q6XCG6 107 aa3.88□□□□□ -1.79
SMC1A-201ENST00000322213 Q6ZRN7 208 aaPredicted RBP3.87□□□□□ -1.79
SMC1A-201ENST00000322213 P0C880 135 aa3.86□□□□□ -1.79
SMC1A-201ENST00000322213 KRTAP13-2Q52LG2 175 aa3.85□□□□□ -1.79
SMC1A-201ENST00000322213 DNAH7Q8WXX0 4024 aa3.84□□□□□ -1.79
SMC1A-201ENST00000322213 KRTAP10-2P60368 255 aa3.84□□□□□ -1.79
SMC1A-201ENST00000322213 KRTAP10-1P60331 282 aa3.84□□□□□ -1.8
SMC1A-201ENST00000322213 C10orf95Q9H7T3 257 aa3.82□□□□□ -1.8
SMC1A-201ENST00000322213 KRTAP13-3Q3SY46 172 aa3.81□□□□□ -1.8
SMC1A-201ENST00000322213 FRAS1Q86XX4 4008 aa3.8□□□□□ -1.8
SMC1A-201ENST00000322213 DNAH3Q8TD57 4116 aa3.76□□□□□ -1.81
SMC1A-201ENST00000322213 M0R2T5 61 aa3.75□□□□□ -1.81
SMC1A-201ENST00000322213 TNP1P09430 55 aa3.75□□□□□ -1.81
SMC1A-201ENST00000322213 Q5VSD8 79 aa3.75□□□□□ -1.81
SMC1A-201ENST00000322213 KRTAP15-1Q3LI76 137 aa3.71□□□□□ -1.82
SMC1A-201ENST00000322213 TPRXLQ17RH7 258 aa3.67□□□□□ -1.82
SMC1A-201ENST00000322213 KRTAP1-4P0C5Y4 121 aa3.65□□□□□ -1.83
SMC1A-201ENST00000322213 KMT2AQ03164 3969 aa3.64□□□□□ -1.83
SMC1A-201ENST00000322213 KRTAP12-2P59991 146 aa3.63□□□□□ -1.83
SMC1A-201ENST00000322213 KRTAP10-8P60410 259 aa3.6□□□□□ -1.83
SMC1A-201ENST00000322213 VPS13BQ7Z7G8 4022 aa3.59□□□□□ -1.83
SMC1A-201ENST00000322213 XP32Q5T750 250 aa3.59□□□□□ -1.84
SMC1A-201ENST00000322213 KRTAP12-1P59990 96 aa3.55□□□□□ -1.84
SMC1A-201ENST00000322213 KRTAP13-4Q3LI77 160 aa3.55□□□□□ -1.84
SMC1A-201ENST00000322213 DNAH6Q9C0G6 4158 aa3.5□□□□□ -1.85
SMC1A-201ENST00000322213 INE1O15225 51 aa3.5□□□□□ -1.85
SMC1A-201ENST00000322213 PRO2289Q9P1D8 64 aa3.46□□□□□ -1.86
SMC1A-201ENST00000322213 KRTAP3-1Q9BYR8 98 aa3.45□□□□□ -1.86
SMC1A-201ENST00000322213 KRTAP10-6P60371 365 aaPredicted RBP3.44□□□□□ -1.86
SMC1A-201ENST00000322213 DNAH2Q9P225 4427 aa3.44□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 54.2 ms