RNA–Protein interactions for RNA: ENST00000297979.9

C9orf3-202, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 1 (best) BASIC

Gene C9orf3, Length 2,820 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-202ENST00000297979 PRAC1Q96KF2 57 aa8.57□□□□□ -1.04
C9orf3-202ENST00000297979 BPY2O14599 106 aa8.56□□□□□ -1.04
C9orf3-202ENST00000297979 RYR2Q92736 4967 aa8.56□□□□□ -1.04
C9orf3-202ENST00000297979 A0A087WSZ3 146 aa8.55□□□□□ -1.04
C9orf3-202ENST00000297979 RPL37AP61513 92 aaKnown RBP8.55□□□□□ -1.04
C9orf3-202ENST00000297979 ANAPC11Q9NYG5 84 aa8.55□□□□□ -1.04
C9orf3-202ENST00000297979 CHKB-CPT1BH3BT56 60 aa8.55□□□□□ -1.04
C9orf3-202ENST00000297979 MOBPQ13875 183 aa8.53□□□□□ -1.04
C9orf3-202ENST00000297979 J3QL48 77 aa8.53□□□□□ -1.04
C9orf3-202ENST00000297979 PLA2G1BP04054 148 aaKnown RBP8.51□□□□□ -1.05
C9orf3-202ENST00000297979 LRP1BQ9NZR2 4599 aa8.51□□□□□ -1.05
C9orf3-202ENST00000297979 TMEM254Q8TBM7 123 aa8.51□□□□□ -1.05
C9orf3-202ENST00000297979 PKHD1P08F94 4074 aa8.5□□□□□ -1.05
C9orf3-202ENST00000297979 Q8N9L7 120 aa8.5□□□□□ -1.05
C9orf3-202ENST00000297979 IGKV4-1P06312 121 aa8.49□□□□□ -1.05
C9orf3-202ENST00000297979 KMT2CQ8NEZ4 4911 aaKnown RBP8.48□□□□□ -1.05
C9orf3-202ENST00000297979 C1orf64Q8NEQ6 169 aa8.48□□□□□ -1.05
C9orf3-202ENST00000297979 DSCR10P59022 87 aa8.46□□□□□ -1.06
C9orf3-202ENST00000297979 DYNC1H1Q14204 4646 aaKnown RBP8.45□□□□□ -1.06
C9orf3-202ENST00000297979 RETNLBQ9BQ08 111 aa8.44□□□□□ -1.06
C9orf3-202ENST00000297979 DEFB116Q30KQ4 102 aa8.44□□□□□ -1.06
C9orf3-202ENST00000297979 LINC00472Q9H8W2 130 aa8.42□□□□□ -1.06
C9orf3-202ENST00000297979 K7EQZ3 153 aa8.42□□□□□ -1.06
C9orf3-202ENST00000297979 SSBP3-AS1Q7Z2R9 100 aa8.42□□□□□ -1.06
C9orf3-202ENST00000297979 CDC42SE1Q9NRR8 79 aa8.41□□□□□ -1.06
C9orf3-202ENST00000297979 VPS13BQ7Z7G8 4022 aa8.41□□□□□ -1.06
C9orf3-202ENST00000297979 A0A087X002 238 aa8.4□□□□□ -1.06
C9orf3-202ENST00000297979 ADM2Q7Z4H4 148 aa8.4□□□□□ -1.06
C9orf3-202ENST00000297979 A6NED7 52 aa8.4□□□□□ -1.06
C9orf3-202ENST00000297979 SMR3BP02814 79 aaPredicted RBP8.4□□□□□ -1.06
C9orf3-202ENST00000297979 KRTAP1-4P0C5Y4 121 aa8.4□□□□□ -1.06
C9orf3-202ENST00000297979 SPINK6Q6UWN8 80 aa8.39□□□□□ -1.07
C9orf3-202ENST00000297979 KRTAP13-2Q52LG2 175 aa8.38□□□□□ -1.07
C9orf3-202ENST00000297979 CYP4F30PQ9H0H9 118 aa8.37□□□□□ -1.07
C9orf3-202ENST00000297979 Q96NJ1 140 aa8.36□□□□□ -1.07
C9orf3-202ENST00000297979 APOBP04114 4563 aaKnown RBP8.36□□□□□ -1.07
C9orf3-202ENST00000297979 A8MWP4 228 aa8.35□□□□□ -1.07
C9orf3-202ENST00000297979 PRR15LQ9BU68 103 aa8.34□□□□□ -1.07
C9orf3-202ENST00000297979 LIMD2Q9BT23 127 aa8.32□□□□□ -1.08
C9orf3-202ENST00000297979 KRTAP10-4P60372 401 aaPredicted RBP8.31□□□□□ -1.08
C9orf3-202ENST00000297979 NDUFB1O75438 58 aa8.3□□□□□ -1.08
C9orf3-202ENST00000297979 RYR3Q15413 4870 aa8.29□□□□□ -1.08
C9orf3-202ENST00000297979 TYMSOSQ8TAI1 123 aa8.28□□□□□ -1.08
C9orf3-202ENST00000297979 OCR1Q9BZK8 76 aa8.28□□□□□ -1.08
C9orf3-202ENST00000297979 WFDC13Q8IUB5 93 aa8.27□□□□□ -1.09
C9orf3-202ENST00000297979 Q8N9P0 234 aaPredicted RBP8.27□□□□□ -1.09
C9orf3-202ENST00000297979 ASB16-AS1Q495Z4 193 aa8.27□□□□□ -1.09
C9orf3-202ENST00000297979 CDK2AP2O75956 126 aa8.26□□□□□ -1.09
C9orf3-202ENST00000297979 KRTAP29-1A8MX34 341 aaPredicted RBP8.25□□□□□ -1.09
C9orf3-202ENST00000297979 CASC2Q6XLA1 102 aa8.25□□□□□ -1.09
C9orf3-202ENST00000297979 MMP24-AS1A0A0U1RRL7 71 aa8.23□□□□□ -1.09
C9orf3-202ENST00000297979 A0A1B0GVX0 72 aa8.23□□□□□ -1.09
C9orf3-202ENST00000297979 FAT1Q14517 4588 aa8.23□□□□□ -1.09
C9orf3-202ENST00000297979 FAM229AH3BQW9 127 aa8.21□□□□□ -1.09
C9orf3-202ENST00000297979 C8orf17Q9NRJ1 99 aa8.2□□□□□ -1.1
C9orf3-202ENST00000297979 SPINK1P00995 79 aa8.19□□□□□ -1.1
C9orf3-202ENST00000297979 NOTCH2NLQ7Z3S9 236 aa8.19□□□□□ -1.1
C9orf3-202ENST00000297979 LOC101927531A0A1B0GV80 90 aa8.18□□□□□ -1.1
C9orf3-202ENST00000297979 ROMO1P60602 79 aa8.18□□□□□ -1.1
C9orf3-202ENST00000297979 LINC00304Q8N9R0 145 aa8.18□□□□□ -1.1
C9orf3-202ENST00000297979 PRR4Q16378 134 aa8.16□□□□□ -1.1
C9orf3-202ENST00000297979 Q5VSD8 79 aa8.16□□□□□ -1.1
C9orf3-202ENST00000297979 SPAG11AQ6PDA7 123 aa8.16□□□□□ -1.1
C9orf3-202ENST00000297979 SEC61BP60468 96 aaKnown RBP8.15□□□□□ -1.1
C9orf3-202ENST00000297979 KRTAP16-1A8MUX0 517 aa8.14□□□□□ -1.11
C9orf3-202ENST00000297979 RPS29P62273 56 aaKnown RBP8.14□□□□□ -1.11
C9orf3-202ENST00000297979 HSPG2P98160 4391 aa8.13□□□□□ -1.11
C9orf3-202ENST00000297979 CSAG1Q6PB30 78 aa8.12□□□□□ -1.11
C9orf3-202ENST00000297979 PKHD1L1Q86WI1 4243 aa8.12□□□□□ -1.11
C9orf3-202ENST00000297979 MRPL34Q9BQ48 92 aaKnown RBP8.11□□□□□ -1.11
C9orf3-202ENST00000297979 RYR1P21817 5038 aa8.09□□□□□ -1.11
C9orf3-202ENST00000297979 TP53AIP1Q9HCN2 124 aa8.07□□□□□ -1.12
C9orf3-202ENST00000297979 H0Y9P7 68 aa8.05□□□□□ -1.12
C9orf3-202ENST00000297979 SPINK7P58062 85 aa8.04□□□□□ -1.12
C9orf3-202ENST00000297979 ZCCHC13Q8WW36 166 aaKnown RBP8.04□□□□□ -1.12
C9orf3-202ENST00000297979 KRTAP17-1Q9BYP8 105 aa8.03□□□□□ -1.12
C9orf3-202ENST00000297979 P0C880 135 aa8.02□□□□□ -1.12
C9orf3-202ENST00000297979 H3BPC8 53 aa8.02□□□□□ -1.13
C9orf3-202ENST00000297979 Q8N1X5 172 aa8.02□□□□□ -1.13
C9orf3-202ENST00000297979 LINC00208Q96KT6 92 aa8.01□□□□□ -1.13
C9orf3-202ENST00000297979 KIAA1109Q2LD37 5005 aa8□□□□□ -1.13
C9orf3-202ENST00000297979 MIR22HGQ0VDD5 57 aa8□□□□□ -1.13
C9orf3-202ENST00000297979 EPPK1P58107 5090 aaKnown RBP8□□□□□ -1.13
C9orf3-202ENST00000297979 KRTAP10-8P60410 259 aa7.98□□□□□ -1.13
C9orf3-202ENST00000297979 LRP1Q07954 4544 aaKnown RBP7.91□□□□□ -1.14
C9orf3-202ENST00000297979 Q5W150 140 aa7.91□□□□□ -1.14
C9orf3-202ENST00000297979 TNXBP22105 4242 aa7.91□□□□□ -1.14
C9orf3-202ENST00000297979 KRTAP13-3Q3SY46 172 aa7.9□□□□□ -1.14
C9orf3-202ENST00000297979 LINC01558Q9Y6Z2 57 aa7.9□□□□□ -1.14
C9orf3-202ENST00000297979 FLG2Q5D862 2391 aaPredicted RBP7.9□□□□□ -1.14
C9orf3-202ENST00000297979 FAT3Q8TDW7 4589 aa7.88□□□□□ -1.15
C9orf3-202ENST00000297979 LUZP6Q538Z0 58 aa7.86□□□□□ -1.15
C9orf3-202ENST00000297979 MT1HL1P0DM35 61 aa7.85□□□□□ -1.15
C9orf3-202ENST00000297979 C9orf92A6NGG3 77 aa7.85□□□□□ -1.15
C9orf3-202ENST00000297979 PCOTHQ58A44 107 aa7.83□□□□□ -1.16
C9orf3-202ENST00000297979 SPANXA2-OT1Q8N9U9 137 aa7.82□□□□□ -1.16
C9orf3-202ENST00000297979 COA5Q86WW8 74 aa7.79□□□□□ -1.16
C9orf3-202ENST00000297979 C20orf166-AS1Q96NR2 134 aa7.79□□□□□ -1.16
C9orf3-202ENST00000297979 KRTAP4-5Q9BYR2 181 aa7.79□□□□□ -1.16
C9orf3-202ENST00000297979 A8MUU9 505 aa7.78□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 71.5 ms