RNA–Protein interactions for RNA: ENST00000262539.7

PTPN3-201, Transcript of protein tyrosine phosphatase, non-receptor type 3, humanhuman

TSL 5 BASIC

Gene PTPN3, Length 6,832 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN3-201ENST00000262539 LAMA5O15230 3695 aa4.98□□□□□ -1.61
PTPN3-201ENST00000262539 PLAC4Q8WY50 150 aa4.96□□□□□ -1.62
PTPN3-201ENST00000262539 R4GN34 69 aa4.94□□□□□ -1.62
PTPN3-201ENST00000262539 H7BZZ5 65 aa4.93□□□□□ -1.62
PTPN3-201ENST00000262539 ZCCHC13Q8WW36 166 aaKnown RBP4.93□□□□□ -1.62
PTPN3-201ENST00000262539 A0A1B0GU33 70 aa4.92□□□□□ -1.62
PTPN3-201ENST00000262539 MMP24-AS1A0A0U1RRL7 71 aa4.92□□□□□ -1.62
PTPN3-201ENST00000262539 KRTAP29-1A8MX34 341 aaPredicted RBP4.92□□□□□ -1.62
PTPN3-201ENST00000262539 OXTP01178 125 aa4.92□□□□□ -1.62
PTPN3-201ENST00000262539 Q1T7F1 81 aa4.92□□□□□ -1.62
PTPN3-201ENST00000262539 DCHS1Q96JQ0 3298 aa4.9□□□□□ -1.62
PTPN3-201ENST00000262539 PANO1I0J062 215 aa4.89□□□□□ -1.63
PTPN3-201ENST00000262539 KRTAP10-1P60331 282 aa4.89□□□□□ -1.63
PTPN3-201ENST00000262539 LCA10Q71F78 164 aa4.89□□□□□ -1.63
PTPN3-201ENST00000262539 KRTAP10-2P60368 255 aa4.87□□□□□ -1.63
PTPN3-201ENST00000262539 FP248Q71RG6 208 aaPredicted RBP4.86□□□□□ -1.63
PTPN3-201ENST00000262539 DMAC1Q96GE9 116 aa4.85□□□□□ -1.63
PTPN3-201ENST00000262539 M0QZ58 72 aa4.85□□□□□ -1.63
PTPN3-201ENST00000262539 FBN3Q75N90 2809 aa4.84□□□□□ -1.63
PTPN3-201ENST00000262539 SPINK7P58062 85 aa4.84□□□□□ -1.63
PTPN3-201ENST00000262539 SMG1Q96Q15 3661 aaKnown RBP4.84□□□□□ -1.63
PTPN3-201ENST00000262539 KRTAP11-1Q8IUC1 163 aa4.83□□□□□ -1.64
PTPN3-201ENST00000262539 H1FX-AS1Q4G0G2 97 aa4.82□□□□□ -1.64
PTPN3-201ENST00000262539 KTN1-AS1Q86SY8 53 aa4.81□□□□□ -1.64
PTPN3-201ENST00000262539 Q8N9P0 234 aaPredicted RBP4.8□□□□□ -1.64
PTPN3-201ENST00000262539 ADM2Q7Z4H4 148 aa4.78□□□□□ -1.64
PTPN3-201ENST00000262539 Q5W150 140 aa4.77□□□□□ -1.65
PTPN3-201ENST00000262539 PKD1L1Q8TDX9 2849 aa4.77□□□□□ -1.65
PTPN3-201ENST00000262539 FBN1P35555 2871 aaKnown RBP4.75□□□□□ -1.65
PTPN3-201ENST00000262539 KRTAP1-4P0C5Y4 121 aa4.75□□□□□ -1.65
PTPN3-201ENST00000262539 KRTAP13-2Q52LG2 175 aa4.75□□□□□ -1.65
PTPN3-201ENST00000262539 ANK3Q12955 4377 aaKnown RBP4.74□□□□□ -1.65
PTPN3-201ENST00000262539 BSNQ9UPA5 3926 aa4.73□□□□□ -1.65
PTPN3-201ENST00000262539 A0A0A0MQY5 61 aa4.73□□□□□ -1.65
PTPN3-201ENST00000262539 RELNP78509 3460 aa4.72□□□□□ -1.65
PTPN3-201ENST00000262539 A0A087X002 238 aa4.72□□□□□ -1.65
PTPN3-201ENST00000262539 CYSTM1Q9H1C7 97 aa4.71□□□□□ -1.66
PTPN3-201ENST00000262539 TGP01266 2768 aa4.7□□□□□ -1.66
PTPN3-201ENST00000262539 A0A1B0GVY2 172 aa4.7□□□□□ -1.66
PTPN3-201ENST00000262539 CELSR1Q9NYQ6 3014 aa4.7□□□□□ -1.66
PTPN3-201ENST00000262539 DMBT1Q9UGM3 2413 aaPredicted RBP4.67□□□□□ -1.66
PTPN3-201ENST00000262539 RPL37P61927 97 aaKnown RBP4.67□□□□□ -1.66
PTPN3-201ENST00000262539 ROMO1P60602 79 aa4.67□□□□□ -1.66
PTPN3-201ENST00000262539 SVEP1Q4LDE5 3571 aa4.67□□□□□ -1.66
PTPN3-201ENST00000262539 Q75L30 129 aa4.66□□□□□ -1.66
PTPN3-201ENST00000262539 LINC01558Q9Y6Z2 57 aa4.66□□□□□ -1.66
PTPN3-201ENST00000262539 ZFHX3Q15911 3703 aa4.65□□□□□ -1.66
PTPN3-201ENST00000262539 C20orf166-AS1Q96NR2 134 aa4.64□□□□□ -1.67
PTPN3-201ENST00000262539 A8MUU9 505 aa4.64□□□□□ -1.67
PTPN3-201ENST00000262539 TENM2Q9NT68 2774 aa4.64□□□□□ -1.67
PTPN3-201ENST00000262539 MEGF8Q7Z7M0 2845 aa4.63□□□□□ -1.67
PTPN3-201ENST00000262539 SPATA8Q6RVD6 105 aa4.63□□□□□ -1.67
PTPN3-201ENST00000262539 CSMD1Q96PZ7 3565 aa4.62□□□□□ -1.67
PTPN3-201ENST00000262539 PRAC1Q96KF2 57 aa4.62□□□□□ -1.67
PTPN3-201ENST00000262539 VPS13CQ709C8 3753 aa4.6□□□□□ -1.67
PTPN3-201ENST00000262539 NOTCH2NLQ7Z3S9 236 aa4.59□□□□□ -1.67
PTPN3-201ENST00000262539 KRTAP10-8P60410 259 aa4.56□□□□□ -1.68
PTPN3-201ENST00000262539 KRTAP16-1A8MUX0 517 aa4.56□□□□□ -1.68
PTPN3-201ENST00000262539 CSMD2Q7Z408 3487 aa4.55□□□□□ -1.68
PTPN3-201ENST00000262539 KRTAP13-3Q3SY46 172 aa4.55□□□□□ -1.68
PTPN3-201ENST00000262539 TPRXLQ17RH7 258 aa4.5□□□□□ -1.69
PTPN3-201ENST00000262539 Q5VV11 94 aa4.49□□□□□ -1.69
PTPN3-201ENST00000262539 FLG2Q5D862 2391 aaPredicted RBP4.49□□□□□ -1.69
PTPN3-201ENST00000262539 KRTAP10-4P60372 401 aaPredicted RBP4.48□□□□□ -1.69
PTPN3-201ENST00000262539 TNP1P09430 55 aa4.46□□□□□ -1.69
PTPN3-201ENST00000262539 XP32Q5T750 250 aa4.43□□□□□ -1.7
PTPN3-201ENST00000262539 A8MU10 97 aa4.43□□□□□ -1.7
PTPN3-201ENST00000262539 H3BS24 57 aa4.43□□□□□ -1.7
PTPN3-201ENST00000262539 PLECQ15149 4684 aaKnown RBP4.42□□□□□ -1.7
PTPN3-201ENST00000262539 CUBNO60494 3623 aa4.42□□□□□ -1.7
PTPN3-201ENST00000262539 C10orf95Q9H7T3 257 aa4.41□□□□□ -1.7
PTPN3-201ENST00000262539 DNHD1Q96M86 4753 aa4.4□□□□□ -1.71
PTPN3-201ENST00000262539 KRTAP10-10P60014 251 aa4.38□□□□□ -1.71
PTPN3-201ENST00000262539 DNAH10Q8IVF4 4471 aa4.37□□□□□ -1.71
PTPN3-201ENST00000262539 DNAH11Q96DT5 4516 aa4.33□□□□□ -1.72
PTPN3-201ENST00000262539 PRO2289Q9P1D8 64 aa4.32□□□□□ -1.72
PTPN3-201ENST00000262539 DNAH9Q9NYC9 4486 aa4.31□□□□□ -1.72
PTPN3-201ENST00000262539 ZNF469Q96JG9 3925 aaPredicted RBP4.31□□□□□ -1.72
PTPN3-201ENST00000262539 MT1HL1P0DM35 61 aa4.3□□□□□ -1.72
PTPN3-201ENST00000262539 P0C880 135 aa4.29□□□□□ -1.72
PTPN3-201ENST00000262539 TRRAPQ9Y4A5 3859 aa4.29□□□□□ -1.72
PTPN3-201ENST00000262539 KRTAP25-1Q3LHN0 102 aa4.29□□□□□ -1.72
PTPN3-201ENST00000262539 AKAP9Q99996 3911 aa4.27□□□□□ -1.73
PTPN3-201ENST00000262539 HUWE1Q7Z6Z7 4374 aaKnown RBP4.27□□□□□ -1.73
PTPN3-201ENST00000262539 VPS13DQ5THJ4 4388 aa4.27□□□□□ -1.73
PTPN3-201ENST00000262539 H0YAA0 97 aa4.26□□□□□ -1.73
PTPN3-201ENST00000262539 NBPF19A0A087WUL8 3843 aa4.26□□□□□ -1.73
PTPN3-201ENST00000262539 RYR1P21817 5038 aa4.25□□□□□ -1.73
PTPN3-201ENST00000262539 A6NN06 94 aa4.24□□□□□ -1.73
PTPN3-201ENST00000262539 SRRM2Q9UQ35 2752 aaKnown RBP4.24□□□□□ -1.73
PTPN3-201ENST00000262539 ALMS1Q8TCU4 4167 aa4.24□□□□□ -1.73
PTPN3-201ENST00000262539 KIAA1109Q2LD37 5005 aa4.24□□□□□ -1.73
PTPN3-201ENST00000262539 RYR2Q92736 4967 aa4.23□□□□□ -1.73
PTPN3-201ENST00000262539 DNAH5Q8TE73 4624 aa4.23□□□□□ -1.73
PTPN3-201ENST00000262539 DNAH17Q9UFH2 4485 aa4.21□□□□□ -1.74
PTPN3-201ENST00000262539 DYNC1H1Q14204 4646 aaKnown RBP4.21□□□□□ -1.74
PTPN3-201ENST00000262539 COL7A1Q02388 2944 aa4.2□□□□□ -1.74
PTPN3-201ENST00000262539 NDUFAF8A1L188 74 aa4.2□□□□□ -1.74
PTPN3-201ENST00000262539 DNAH1Q9P2D7 4330 aa4.19□□□□□ -1.74
PTPN3-201ENST00000262539 PP632Q6XCG6 107 aa4.17□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 160.6 ms