RNA–Protein interactions for RNA: ENST00000261963.11

MCF2L-201, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 1 (best)

Gene MCF2L, Length 2,419 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-201ENST00000261963 PCOTHQ58A44 107 aa13.66□□□□□ -0.22
MCF2L-201ENST00000261963 SPAG11AQ6PDA7 123 aa13.64□□□□□ -0.23
MCF2L-201ENST00000261963 PLAC8Q9NZF1 115 aa13.63□□□□□ -0.23
MCF2L-201ENST00000261963 LINC00483Q53H64 154 aa13.61□□□□□ -0.23
MCF2L-201ENST00000261963 MOBPQ13875 183 aa13.6□□□□□ -0.23
MCF2L-201ENST00000261963 C7orf65Q6ZTY9 151 aa13.6□□□□□ -0.23
MCF2L-201ENST00000261963 PSORS1C2Q9UIG4 136 aa13.6□□□□□ -0.23
MCF2L-201ENST00000261963 IGLV9-49A0A0B4J1Y8 123 aa13.6□□□□□ -0.23
MCF2L-201ENST00000261963 TP53AIP1Q9HCN2 124 aa13.59□□□□□ -0.23
MCF2L-201ENST00000261963 TGP01266 2768 aa13.59□□□□□ -0.23
MCF2L-201ENST00000261963 FBN3Q75N90 2809 aa13.59□□□□□ -0.23
MCF2L-201ENST00000261963 IGLV5-52A0A0A0MRZ9 124 aa13.58□□□□□ -0.24
MCF2L-201ENST00000261963 KRTAP21-3Q3LHN1 58 aa13.54□□□□□ -0.24
MCF2L-201ENST00000261963 DNAH6Q9C0G6 4158 aa13.54□□□□□ -0.24
MCF2L-201ENST00000261963 Q96NJ1 140 aa13.52□□□□□ -0.24
MCF2L-201ENST00000261963 WWC2-AS2Q96NR7 200 aa13.52□□□□□ -0.24
MCF2L-201ENST00000261963 SPINK7P58062 85 aa13.52□□□□□ -0.25
MCF2L-201ENST00000261963 ASB16-AS1Q495Z4 193 aa13.51□□□□□ -0.25
MCF2L-201ENST00000261963 DNAH5Q8TE73 4624 aa13.51□□□□□ -0.25
MCF2L-201ENST00000261963 ZNF706Q9Y5V0 76 aaPredicted RBP13.51□□□□□ -0.25
MCF2L-201ENST00000261963 DNAH11Q96DT5 4516 aa13.5□□□□□ -0.25
MCF2L-201ENST00000261963 C1orf134Q5TEV5 83 aa13.5□□□□□ -0.25
MCF2L-201ENST00000261963 ZNF861PO60384 105 aa13.49□□□□□ -0.25
MCF2L-201ENST00000261963 HRES1P13985 223 aa13.49□□□□□ -0.25
MCF2L-201ENST00000261963 ANAPC11Q9NYG5 84 aa13.49□□□□□ -0.25
MCF2L-201ENST00000261963 C8orf17Q9NRJ1 99 aa13.45□□□□□ -0.26
MCF2L-201ENST00000261963 ALMS1Q8TCU4 4167 aa13.44□□□□□ -0.26
MCF2L-201ENST00000261963 LY6G6CO95867 125 aa13.41□□□□□ -0.26
MCF2L-201ENST00000261963 IGHV6-1A0A0B4J1U7 121 aa13.35□□□□□ -0.27
MCF2L-201ENST00000261963 IGLV7-43P04211 117 aa13.35□□□□□ -0.27
MCF2L-201ENST00000261963 A0A1B0GVX0 72 aa13.33□□□□□ -0.27
MCF2L-201ENST00000261963 MRPL34Q9BQ48 92 aaKnown RBP13.32□□□□□ -0.28
MCF2L-201ENST00000261963 KRTAP10-2P60368 255 aa13.31□□□□□ -0.28
MCF2L-201ENST00000261963 CDK2AP2O75956 126 aa13.29□□□□□ -0.28
MCF2L-201ENST00000261963 FAT2Q9NYQ8 4349 aa13.29□□□□□ -0.28
MCF2L-201ENST00000261963 PRR26Q8N8Z3 221 aa13.29□□□□□ -0.28
MCF2L-201ENST00000261963 HYDINQ4G0P3 5121 aa13.28□□□□□ -0.28
MCF2L-201ENST00000261963 PKD1P98161 4303 aa13.28□□□□□ -0.28
MCF2L-201ENST00000261963 CIRBP-AS1Q8TBR5 109 aa13.27□□□□□ -0.29
MCF2L-201ENST00000261963 LRP1BQ9NZR2 4599 aa13.27□□□□□ -0.29
MCF2L-201ENST00000261963 LINC00313P59037 77 aa13.26□□□□□ -0.29
MCF2L-201ENST00000261963 A0A087X002 238 aa13.22□□□□□ -0.29
MCF2L-201ENST00000261963 NOTCH2NLQ7Z3S9 236 aa13.22□□□□□ -0.29
MCF2L-201ENST00000261963 C8orf87E5RJ46 101 aa13.21□□□□□ -0.3
MCF2L-201ENST00000261963 ACYP2P14621 99 aa13.18□□□□□ -0.3
MCF2L-201ENST00000261963 PRAC1Q96KF2 57 aa13.18□□□□□ -0.3
MCF2L-201ENST00000261963 Q6ZSA8 131 aa13.14□□□□□ -0.31
MCF2L-201ENST00000261963 KRTAP10-1P60331 282 aa13.14□□□□□ -0.31
MCF2L-201ENST00000261963 SPINK6Q6UWN8 80 aa13.13□□□□□ -0.31
MCF2L-201ENST00000261963 Q5W150 140 aa13.13□□□□□ -0.31
MCF2L-201ENST00000261963 SSBP3-AS1Q7Z2R9 100 aa13.13□□□□□ -0.31
MCF2L-201ENST00000261963 PLA2G1BP04054 148 aaKnown RBP13.12□□□□□ -0.31
MCF2L-201ENST00000261963 KRTAP13-3Q3SY46 172 aa13.09□□□□□ -0.31
MCF2L-201ENST00000261963 VPS13BQ7Z7G8 4022 aa13.09□□□□□ -0.31
MCF2L-201ENST00000261963 ADM2Q7Z4H4 148 aa13.08□□□□□ -0.32
MCF2L-201ENST00000261963 KRTAP13-2Q52LG2 175 aa13.05□□□□□ -0.32
MCF2L-201ENST00000261963 A0A1B0GU69 56 aa13.04□□□□□ -0.32
MCF2L-201ENST00000261963 DMAC1Q96GE9 116 aa13.03□□□□□ -0.32
MCF2L-201ENST00000261963 SPATA8Q6RVD6 105 aa13.02□□□□□ -0.33
MCF2L-201ENST00000261963 LINC01554Q52M75 96 aa13.01□□□□□ -0.33
MCF2L-201ENST00000261963 C4orf48Q5BLP8 95 aa12.99□□□□□ -0.33
MCF2L-201ENST00000261963 SACSQ9NZJ4 4579 aa12.96□□□□□ -0.33
MCF2L-201ENST00000261963 KRTAP1-4P0C5Y4 121 aa12.95□□□□□ -0.34
MCF2L-201ENST00000261963 PKHD1P08F94 4074 aa12.93□□□□□ -0.34
MCF2L-201ENST00000261963 MIR22HGQ0VDD5 57 aa12.92□□□□□ -0.34
MCF2L-201ENST00000261963 UQCR11O14957 56 aa12.9□□□□□ -0.34
MCF2L-201ENST00000261963 FAM229AH3BQW9 127 aa12.83□□□□□ -0.36
MCF2L-201ENST00000261963 DYNC1H1Q14204 4646 aaKnown RBP12.81□□□□□ -0.36
MCF2L-201ENST00000261963 IGKV2-30P06310 120 aa12.79□□□□□ -0.36
MCF2L-201ENST00000261963 RETNLBQ9BQ08 111 aa12.79□□□□□ -0.36
MCF2L-201ENST00000261963 KRTAP16-1A8MUX0 517 aa12.77□□□□□ -0.37
MCF2L-201ENST00000261963 CSAG1Q6PB30 78 aa12.72□□□□□ -0.37
MCF2L-201ENST00000261963 TYMSOSQ8TAI1 123 aa12.71□□□□□ -0.37
MCF2L-201ENST00000261963 H3BS24 57 aa12.68□□□□□ -0.38
MCF2L-201ENST00000261963 FAT1Q14517 4588 aa12.65□□□□□ -0.38
MCF2L-201ENST00000261963 SPINK1P00995 79 aa12.64□□□□□ -0.39
MCF2L-201ENST00000261963 APOBP04114 4563 aaKnown RBP12.64□□□□□ -0.39
MCF2L-201ENST00000261963 PKHD1L1Q86WI1 4243 aa12.58□□□□□ -0.4
MCF2L-201ENST00000261963 IGKV2D-30A0A075B6S6 120 aa12.57□□□□□ -0.4
MCF2L-201ENST00000261963 SMR3BP02814 79 aaPredicted RBP12.56□□□□□ -0.4
MCF2L-201ENST00000261963 LINC00304Q8N9R0 145 aa12.54□□□□□ -0.4
MCF2L-201ENST00000261963 RYR2Q92736 4967 aa12.54□□□□□ -0.4
MCF2L-201ENST00000261963 A0A1B0GVY2 172 aa12.52□□□□□ -0.4
MCF2L-201ENST00000261963 RPS29P62273 56 aaKnown RBP12.5□□□□□ -0.41
MCF2L-201ENST00000261963 KRTAP10-4P60372 401 aaPredicted RBP12.46□□□□□ -0.41
MCF2L-201ENST00000261963 KMT2CQ8NEZ4 4911 aaKnown RBP12.39□□□□□ -0.43
MCF2L-201ENST00000261963 A8MUU9 505 aa12.33□□□□□ -0.43
MCF2L-201ENST00000261963 Q8N1X5 172 aa12.31□□□□□ -0.44
MCF2L-201ENST00000261963 KRTAP25-1Q3LHN0 102 aa12.3□□□□□ -0.44
MCF2L-201ENST00000261963 H0YAA0 97 aa12.29□□□□□ -0.44
MCF2L-201ENST00000261963 C9orf92A6NGG3 77 aa12.26□□□□□ -0.45
MCF2L-201ENST00000261963 C20orf166-AS1Q96NR2 134 aa12.22□□□□□ -0.45
MCF2L-201ENST00000261963 ROMO1P60602 79 aa12.18□□□□□ -0.46
MCF2L-201ENST00000261963 A0A1B0GU33 70 aa12.16□□□□□ -0.46
MCF2L-201ENST00000261963 TNXBP22105 4242 aa12.16□□□□□ -0.46
MCF2L-201ENST00000261963 FAT3Q8TDW7 4589 aa12.14□□□□□ -0.47
MCF2L-201ENST00000261963 LRP1Q07954 4544 aaKnown RBP12.13□□□□□ -0.47
MCF2L-201ENST00000261963 FLG2Q5D862 2391 aaPredicted RBP12.13□□□□□ -0.47
MCF2L-201ENST00000261963 HSPG2P98160 4391 aa12.11□□□□□ -0.47
MCF2L-201ENST00000261963 H1FX-AS1Q4G0G2 97 aa12.09□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms