RNA–Protein interactions for RNA: ENST00000637050.1

CLN3-254, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-254ENST00000637050 DEFB105AQ8NG35 78 aa11.27□□□□□ -0.61
CLN3-254ENST00000637050 OBSCN-AS1Q96MR7 158 aa11.27□□□□□ -0.61
CLN3-254ENST00000637050 UQCRQO14949 82 aa11.26□□□□□ -0.61
CLN3-254ENST00000637050 ACYP1P07311 99 aa11.26□□□□□ -0.61
CLN3-254ENST00000637050 ZNF861PO60384 105 aa11.25□□□□□ -0.61
CLN3-254ENST00000637050 IGLV7-43P04211 117 aa11.25□□□□□ -0.61
CLN3-254ENST00000637050 C9orf153Q5TBE3 101 aa11.24□□□□□ -0.61
CLN3-254ENST00000637050 C3orf22Q8N5N4 141 aa11.24□□□□□ -0.61
CLN3-254ENST00000637050 LAMTOR3Q9UHA4 124 aa11.23□□□□□ -0.61
CLN3-254ENST00000637050 JMJD7-PLA2G4BH0Y9G9 81 aa11.22□□□□□ -0.61
CLN3-254ENST00000637050 LRP1BQ9NZR2 4599 aa11.22□□□□□ -0.61
CLN3-254ENST00000637050 DYNC1H1Q14204 4646 aaKnown RBP11.21□□□□□ -0.61
CLN3-254ENST00000637050 SPRR1BP22528 89 aa11.19□□□□□ -0.62
CLN3-254ENST00000637050 SMIM29Q86T20 159 aa11.17□□□□□ -0.62
CLN3-254ENST00000637050 C14orf132Q9NPU4 83 aa11.17□□□□□ -0.62
CLN3-254ENST00000637050 RBM3P98179 157 aaKnown RBP11.17□□□□□ -0.62
CLN3-254ENST00000637050 GAGE2AQ6NT46 116 aa11.16□□□□□ -0.62
CLN3-254ENST00000637050 SPRR4Q96PI1 79 aa11.15□□□□□ -0.62
CLN3-254ENST00000637050 ZNF706Q9Y5V0 76 aaPredicted RBP11.14□□□□□ -0.63
CLN3-254ENST00000637050 FAM236AA0A1B0GUQ0 79 aa11.13□□□□□ -0.63
CLN3-254ENST00000637050 FAM236BA0A1B0GV22 79 aa11.13□□□□□ -0.63
CLN3-254ENST00000637050 SMR3BP02814 79 aaPredicted RBP11.12□□□□□ -0.63
CLN3-254ENST00000637050 CRYGAP11844 174 aa11.12□□□□□ -0.63
CLN3-254ENST00000637050 RPL37AP61513 92 aaKnown RBP11.12□□□□□ -0.63
CLN3-254ENST00000637050 LINC00483Q53H64 154 aa11.12□□□□□ -0.63
CLN3-254ENST00000637050 LINC00643Q86TS7 51 aa11.12□□□□□ -0.63
CLN3-254ENST00000637050 TRBV7-4A0A0J9YYF1 115 aa11.11□□□□□ -0.63
CLN3-254ENST00000637050 SRRM2Q9UQ35 2752 aaKnown RBP11.11□□□□□ -0.63
CLN3-254ENST00000637050 LOC110117498A0A087WWA1 95 aa11.11□□□□□ -0.63
CLN3-254ENST00000637050 COX7CP15954 63 aa11.11□□□□□ -0.63
CLN3-254ENST00000637050 TMEM258P61165 79 aa11.11□□□□□ -0.63
CLN3-254ENST00000637050 DSCR8Q96T75 97 aa11.11□□□□□ -0.63
CLN3-254ENST00000637050 ATOX1O00244 68 aa11.09□□□□□ -0.63
CLN3-254ENST00000637050 CDK2AP2O75956 126 aa11.09□□□□□ -0.63
CLN3-254ENST00000637050 Q6ZQT0 140 aa11.09□□□□□ -0.63
CLN3-254ENST00000637050 F8WEM9 126 aa11.08□□□□□ -0.64
CLN3-254ENST00000637050 CCKP06307 115 aa11.08□□□□□ -0.64
CLN3-254ENST00000637050 PDE6GP18545 87 aa11.08□□□□□ -0.64
CLN3-254ENST00000637050 APOBP04114 4563 aaKnown RBP11.07□□□□□ -0.64
CLN3-254ENST00000637050 IGLV8-61A0A075B6I0 122 aa11.07□□□□□ -0.64
CLN3-254ENST00000637050 KRTAP10-4P60372 401 aaPredicted RBP11.04□□□□□ -0.64
CLN3-254ENST00000637050 ANAPC11Q9NYG5 84 aa11.02□□□□□ -0.64
CLN3-254ENST00000637050 SPINK6Q6UWN8 80 aa11.01□□□□□ -0.65
CLN3-254ENST00000637050 VPS13BQ7Z7G8 4022 aa10.99□□□□□ -0.65
CLN3-254ENST00000637050 IGFL1Q6UW32 110 aa10.99□□□□□ -0.65
CLN3-254ENST00000637050 Q6JHZ5 121 aa10.98□□□□□ -0.65
CLN3-254ENST00000637050 IGLV9-49A0A0B4J1Y8 123 aa10.98□□□□□ -0.65
CLN3-254ENST00000637050 A0A1W2PNM2 257 aa10.96□□□□□ -0.65
CLN3-254ENST00000637050 KRTAP1-4P0C5Y4 121 aa10.96□□□□□ -0.65
CLN3-254ENST00000637050 HIST1H4AP62805 103 aaKnown RBP10.96□□□□□ -0.65
CLN3-254ENST00000637050 A0A0G2JQZ4 141 aa10.95□□□□□ -0.66
CLN3-254ENST00000637050 FAM229AH3BQW9 127 aa10.95□□□□□ -0.66
CLN3-254ENST00000637050 PLA2G1BP04054 148 aaKnown RBP10.95□□□□□ -0.66
CLN3-254ENST00000637050 FAM229BQ4G0N7 80 aa10.95□□□□□ -0.66
CLN3-254ENST00000637050 Q8NBF4 154 aa10.95□□□□□ -0.66
CLN3-254ENST00000637050 LINC00846Q9NV44 126 aa10.93□□□□□ -0.66
CLN3-254ENST00000637050 MOBPQ13875 183 aa10.92□□□□□ -0.66
CLN3-254ENST00000637050 SERP2Q8N6R1 65 aa10.92□□□□□ -0.66
CLN3-254ENST00000637050 A0A1B0GW54 56 aa10.91□□□□□ -0.66
CLN3-254ENST00000637050 A0A087X002 238 aa10.9□□□□□ -0.66
CLN3-254ENST00000637050 PRO0628Q9UI54 55 aa10.9□□□□□ -0.66
CLN3-254ENST00000637050 Q5VSD8 79 aa10.89□□□□□ -0.67
CLN3-254ENST00000637050 EPPK1P58107 5090 aaKnown RBP10.88□□□□□ -0.67
CLN3-254ENST00000637050 KRTAP13-2Q52LG2 175 aa10.88□□□□□ -0.67
CLN3-254ENST00000637050 FAT1Q14517 4588 aa10.87□□□□□ -0.67
CLN3-254ENST00000637050 SSBP3-AS1Q7Z2R9 100 aa10.86□□□□□ -0.67
CLN3-254ENST00000637050 KRTAP17-1Q9BYP8 105 aa10.85□□□□□ -0.67
CLN3-254ENST00000637050 HSPG2P98160 4391 aa10.85□□□□□ -0.67
CLN3-254ENST00000637050 RYR1P21817 5038 aa10.84□□□□□ -0.67
CLN3-254ENST00000637050 UBL5Q9BZL1 73 aa10.84□□□□□ -0.67
CLN3-254ENST00000637050 Q5XG85 94 aa10.82□□□□□ -0.68
CLN3-254ENST00000637050 Q8N1X5 172 aa10.82□□□□□ -0.68
CLN3-254ENST00000637050 HRCT1Q6UXD1 115 aa10.82□□□□□ -0.68
CLN3-254ENST00000637050 Q6ZVQ6 151 aa10.82□□□□□ -0.68
CLN3-254ENST00000637050 A0A087WSZ3 146 aa10.79□□□□□ -0.68
CLN3-254ENST00000637050 C4orf26Q17RF5 130 aa10.79□□□□□ -0.68
CLN3-254ENST00000637050 KIAA1109Q2LD37 5005 aa10.78□□□□□ -0.68
CLN3-254ENST00000637050 CD164Q04900 197 aa10.77□□□□□ -0.69
CLN3-254ENST00000637050 NREPQ16612 68 aa10.77□□□□□ -0.69
CLN3-254ENST00000637050 PRR26Q8N8Z3 221 aa10.77□□□□□ -0.69
CLN3-254ENST00000637050 ATP5EP2Q5VTU8 51 aa10.76□□□□□ -0.69
CLN3-254ENST00000637050 SERP1Q9Y6X1 66 aa10.76□□□□□ -0.69
CLN3-254ENST00000637050 TYMSOSQ8TAI1 123 aa10.76□□□□□ -0.69
CLN3-254ENST00000637050 FAM236DA0A1B0GTK5 79 aa10.71□□□□□ -0.69
CLN3-254ENST00000637050 FAM236CP0DP71 79 aa10.71□□□□□ -0.69
CLN3-254ENST00000637050 PKHD1L1Q86WI1 4243 aa10.7□□□□□ -0.7
CLN3-254ENST00000637050 OXTP01178 125 aa10.69□□□□□ -0.7
CLN3-254ENST00000637050 IGKV3D-7A0A0C4DH55 119 aa10.69□□□□□ -0.7
CLN3-254ENST00000637050 CXCL6P80162 114 aa10.68□□□□□ -0.7
CLN3-254ENST00000637050 SMIM26A0A096LP01 95 aa10.66□□□□□ -0.7
CLN3-254ENST00000637050 V9GYY9 64 aa10.66□□□□□ -0.7
CLN3-254ENST00000637050 BPY2O14599 106 aa10.66□□□□□ -0.7
CLN3-254ENST00000637050 ATP5EP56381 51 aaPredicted RBP10.66□□□□□ -0.7
CLN3-254ENST00000637050 LINC00472Q9H8W2 130 aa10.66□□□□□ -0.7
CLN3-254ENST00000637050 C4orf48Q5BLP8 95 aa10.63□□□□□ -0.71
CLN3-254ENST00000637050 LINC00304Q8N9R0 145 aa10.63□□□□□ -0.71
CLN3-254ENST00000637050 CYSTM1Q9H1C7 97 aa10.63□□□□□ -0.71
CLN3-254ENST00000637050 SPINK1P00995 79 aa10.63□□□□□ -0.71
CLN3-254ENST00000637050 Q96NJ1 140 aa10.63□□□□□ -0.71
CLN3-254ENST00000637050 SEC61GP60059 68 aa10.62□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 91.9 ms