RNA–Protein interactions for RNA: ENST00000636172.1

CLN3-245, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,536 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-245ENST00000636172 BAALC-AS2P0C853 105 aa12.27□□□□□ -0.45
CLN3-245ENST00000636172 SMIM29Q86T20 159 aa12.26□□□□□ -0.45
CLN3-245ENST00000636172 C3orf22Q8N5N4 141 aa12.26□□□□□ -0.45
CLN3-245ENST00000636172 GHRHP01286 108 aa12.25□□□□□ -0.45
CLN3-245ENST00000636172 H3BQ85 93 aa12.24□□□□□ -0.45
CLN3-245ENST00000636172 TMEM256-PLSCR3K7ERE1 68 aa12.23□□□□□ -0.45
CLN3-245ENST00000636172 FAM229BQ4G0N7 80 aa12.22□□□□□ -0.45
CLN3-245ENST00000636172 PRO0461Q9UI25 63 aa12.22□□□□□ -0.45
CLN3-245ENST00000636172 FLG2Q5D862 2391 aaPredicted RBP12.22□□□□□ -0.45
CLN3-245ENST00000636172 A0A087X002 238 aa12.21□□□□□ -0.45
CLN3-245ENST00000636172 H3BT86 120 aa12.2□□□□□ -0.46
CLN3-245ENST00000636172 UBE2V1Q13404 147 aa12.2□□□□□ -0.46
CLN3-245ENST00000636172 LAMTOR3Q9UHA4 124 aa12.2□□□□□ -0.46
CLN3-245ENST00000636172 LRP1Q07954 4544 aaKnown RBP12.19□□□□□ -0.46
CLN3-245ENST00000636172 SMCPP49901 116 aaPredicted RBP12.19□□□□□ -0.46
CLN3-245ENST00000636172 NDUFV3P56181 108 aaKnown RBP12.18□□□□□ -0.46
CLN3-245ENST00000636172 ANKRD29Q8N6D5 301 aa12.18□□□□□ -0.46
CLN3-245ENST00000636172 CRYGAP11844 174 aa12.17□□□□□ -0.46
CLN3-245ENST00000636172 KRTAP13-2Q52LG2 175 aa12.17□□□□□ -0.46
CLN3-245ENST00000636172 IGLV9-49A0A0B4J1Y8 123 aa12.16□□□□□ -0.46
CLN3-245ENST00000636172 MYCBP2O75592 4640 aa12.16□□□□□ -0.46
CLN3-245ENST00000636172 FAT3Q8TDW7 4589 aa12.16□□□□□ -0.46
CLN3-245ENST00000636172 PRR26Q8N8Z3 221 aa12.16□□□□□ -0.46
CLN3-245ENST00000636172 LINC01600Q96MT4 127 aa12.15□□□□□ -0.46
CLN3-245ENST00000636172 F8WEM9 126 aa12.14□□□□□ -0.47
CLN3-245ENST00000636172 F8W1H4 67 aa12.13□□□□□ -0.47
CLN3-245ENST00000636172 MOBPQ13875 183 aa12.13□□□□□ -0.47
CLN3-245ENST00000636172 A0A1B0GV72 72 aa12.12□□□□□ -0.47
CLN3-245ENST00000636172 C9orf153Q5TBE3 101 aa12.12□□□□□ -0.47
CLN3-245ENST00000636172 IGLV8-61A0A075B6I0 122 aa12.11□□□□□ -0.47
CLN3-245ENST00000636172 HERC1Q15751 4861 aa12.1□□□□□ -0.47
CLN3-245ENST00000636172 Q8NBF4 154 aa12.1□□□□□ -0.47
CLN3-245ENST00000636172 TYMSOSQ8TAI1 123 aa12.07□□□□□ -0.48
CLN3-245ENST00000636172 OBSCN-AS1Q96MR7 158 aa12.06□□□□□ -0.48
CLN3-245ENST00000636172 A0A0G2JQZ4 141 aa12.05□□□□□ -0.48
CLN3-245ENST00000636172 JMJD7-PLA2G4BH0Y9G9 81 aa12.05□□□□□ -0.48
CLN3-245ENST00000636172 RBM3P98179 157 aaKnown RBP12.05□□□□□ -0.48
CLN3-245ENST00000636172 SSBP3-AS1Q7Z2R9 100 aa12.05□□□□□ -0.48
CLN3-245ENST00000636172 TNXBP22105 4242 aa12.04□□□□□ -0.48
CLN3-245ENST00000636172 OXTP01178 125 aa12.04□□□□□ -0.48
CLN3-245ENST00000636172 KRTAP10-8P60410 259 aa12.04□□□□□ -0.48
CLN3-245ENST00000636172 Q6JHZ5 121 aa12.03□□□□□ -0.48
CLN3-245ENST00000636172 IGFL1Q6UW32 110 aa12.03□□□□□ -0.48
CLN3-245ENST00000636172 TRBV7-4A0A0J9YYF1 115 aa12.01□□□□□ -0.49
CLN3-245ENST00000636172 MT1HL1P0DM35 61 aa12.01□□□□□ -0.49
CLN3-245ENST00000636172 ETDBQ3ZM63 59 aa12.01□□□□□ -0.49
CLN3-245ENST00000636172 TEN1Q86WV5 123 aa12.01□□□□□ -0.49
CLN3-245ENST00000636172 DSCR8Q96T75 97 aa12□□□□□ -0.49
CLN3-245ENST00000636172 C14orf132Q9NPU4 83 aa12□□□□□ -0.49
CLN3-245ENST00000636172 KRTAP29-1A8MX34 341 aaPredicted RBP11.99□□□□□ -0.49
CLN3-245ENST00000636172 LOC110117498A0A087WWA1 95 aa11.96□□□□□ -0.5
CLN3-245ENST00000636172 Q6ZQT0 140 aa11.94□□□□□ -0.5
CLN3-245ENST00000636172 LINC00304Q8N9R0 145 aa11.94□□□□□ -0.5
CLN3-245ENST00000636172 A0A1W2PNM2 257 aa11.93□□□□□ -0.5
CLN3-245ENST00000636172 HRCT1Q6UXD1 115 aa11.92□□□□□ -0.5
CLN3-245ENST00000636172 DMBT1Q9UGM3 2413 aaPredicted RBP11.92□□□□□ -0.5
CLN3-245ENST00000636172 CCKP06307 115 aa11.91□□□□□ -0.5
CLN3-245ENST00000636172 PDE6GP18545 87 aa11.91□□□□□ -0.5
CLN3-245ENST00000636172 CD164Q04900 197 aa11.9□□□□□ -0.5
CLN3-245ENST00000636172 Q6Q795 121 aa11.89□□□□□ -0.51
CLN3-245ENST00000636172 VPS25Q9BRG1 176 aa11.89□□□□□ -0.51
CLN3-245ENST00000636172 C4orf48Q5BLP8 95 aa11.88□□□□□ -0.51
CLN3-245ENST00000636172 SPAG11AQ6PDA7 123 aa11.87□□□□□ -0.51
CLN3-245ENST00000636172 TRBV7-7A0A0K0K1E9 115 aa11.86□□□□□ -0.51
CLN3-245ENST00000636172 SPINK1P00995 79 aa11.85□□□□□ -0.51
CLN3-245ENST00000636172 J3QL48 77 aa11.84□□□□□ -0.51
CLN3-245ENST00000636172 C21orf62-AS1Q17RA5 79 aa11.82□□□□□ -0.52
CLN3-245ENST00000636172 A0A087WSZ3 146 aa11.81□□□□□ -0.52
CLN3-245ENST00000636172 RPS29P62273 56 aaKnown RBP11.8□□□□□ -0.52
CLN3-245ENST00000636172 A0A1B0GW54 56 aa11.76□□□□□ -0.53
CLN3-245ENST00000636172 Q5XG85 94 aa11.76□□□□□ -0.53
CLN3-245ENST00000636172 LIMD2Q9BT23 127 aa11.76□□□□□ -0.53
CLN3-245ENST00000636172 SS18L2Q9UHA2 77 aa11.72□□□□□ -0.53
CLN3-245ENST00000636172 ASB16-AS1Q495Z4 193 aa11.69□□□□□ -0.54
CLN3-245ENST00000636172 LINC00846Q9NV44 126 aa11.68□□□□□ -0.54
CLN3-245ENST00000636172 FAM240AA0A1B0GVK7 77 aa11.66□□□□□ -0.54
CLN3-245ENST00000636172 C1orf195Q5TG92 126 aa11.65□□□□□ -0.55
CLN3-245ENST00000636172 Q96NJ1 140 aa11.65□□□□□ -0.55
CLN3-245ENST00000636172 RETNLBQ9BQ08 111 aa11.65□□□□□ -0.55
CLN3-245ENST00000636172 HMCN2Q8NDA2 5059 aa11.65□□□□□ -0.55
CLN3-245ENST00000636172 J3QR89 54 aa11.64□□□□□ -0.55
CLN3-245ENST00000636172 ACYP1P07311 99 aa11.64□□□□□ -0.55
CLN3-245ENST00000636172 NREPQ16612 68 aa11.62□□□□□ -0.55
CLN3-245ENST00000636172 LINC00472Q9H8W2 130 aa11.62□□□□□ -0.55
CLN3-245ENST00000636172 Q6ZVQ6 151 aa11.6□□□□□ -0.55
CLN3-245ENST00000636172 UBL5Q9BZL1 73 aa11.59□□□□□ -0.55
CLN3-245ENST00000636172 DEFB116Q30KQ4 102 aa11.58□□□□□ -0.56
CLN3-245ENST00000636172 K7ERU9 68 aa11.56□□□□□ -0.56
CLN3-245ENST00000636172 IGKV4-1P06312 121 aa11.53□□□□□ -0.56
CLN3-245ENST00000636172 FP248Q71RG6 208 aaPredicted RBP11.51□□□□□ -0.57
CLN3-245ENST00000636172 SIGMAR1Q99720 223 aa11.51□□□□□ -0.57
CLN3-245ENST00000636172 J3KT08 172 aa11.5□□□□□ -0.57
CLN3-245ENST00000636172 PRR4Q16378 134 aa11.49□□□□□ -0.57
CLN3-245ENST00000636172 BPY2O14599 106 aa11.48□□□□□ -0.57
CLN3-245ENST00000636172 CDIP1Q9H305 208 aa11.46□□□□□ -0.57
CLN3-245ENST00000636172 IGLV7-46A0A075B6I9 117 aa11.45□□□□□ -0.58
CLN3-245ENST00000636172 DSCR10P59022 87 aa11.45□□□□□ -0.58
CLN3-245ENST00000636172 A8MWP4 228 aa11.42□□□□□ -0.58
CLN3-245ENST00000636172 LINC00643Q86TS7 51 aa11.42□□□□□ -0.58
CLN3-245ENST00000636172 UBR4Q5T4S7 5183 aa11.41□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 62.6 ms