RNA–Protein interactions for RNA: ENST00000635893.1

SCN1A-211, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 168 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-211ENST00000635893 LINC00474Q9P2X8 69 aa-2.74□□□□□ -2.85
SCN1A-211ENST00000635893 GINS2Q9Y248 185 aa-2.74□□□□□ -2.85
SCN1A-211ENST00000635893 ZFYVE16Q7Z3T8 1539 aa-2.74□□□□□ -2.85
SCN1A-211ENST00000635893 KIAA0586Q9BVV6 1533 aa-2.74□□□□□ -2.85
SCN1A-211ENST00000635893 THOC2Q8NI27 1593 aaKnown RBP-2.74□□□□□ -2.85
SCN1A-211ENST00000635893 DDX60LQ5H9U9 1706 aaKnown RBP-2.75□□□□□ -2.85
SCN1A-211ENST00000635893 DOT1LQ8TEK3 1739 aa-2.75□□□□□ -2.85
SCN1A-211ENST00000635893 COX6CP09669 75 aa-2.75□□□□□ -2.85
SCN1A-211ENST00000635893 CCDC153Q494R4 210 aa-2.75□□□□□ -2.85
SCN1A-211ENST00000635893 VAMP8Q9BV40 100 aa-2.75□□□□□ -2.85
SCN1A-211ENST00000635893 RGPD1P0DJD0 1748 aa-2.76□□□□□ -2.85
SCN1A-211ENST00000635893 ITSN1Q15811 1721 aa-2.76□□□□□ -2.85
SCN1A-211ENST00000635893 NDUFC1O43677 76 aa-2.76□□□□□ -2.85
SCN1A-211ENST00000635893 LINC00694P0DN24 101 aa-2.76□□□□□ -2.85
SCN1A-211ENST00000635893 MORN2Q502X0 79 aa-2.76□□□□□ -2.85
SCN1A-211ENST00000635893 Q56UQ5 140 aa-2.76□□□□□ -2.85
SCN1A-211ENST00000635893 C12orf57Q99622 126 aa-2.76□□□□□ -2.85
SCN1A-211ENST00000635893 CENPHQ9H3R5 247 aa-2.76□□□□□ -2.85
SCN1A-211ENST00000635893 MANBALQ9NQG1 85 aa-2.76□□□□□ -2.85
SCN1A-211ENST00000635893 CPSF1Q10570 1443 aaKnown RBP-2.76□□□□□ -2.85
SCN1A-211ENST00000635893 PPLO60437 1756 aa-2.77□□□□□ -2.85
SCN1A-211ENST00000635893 BRCA2P51587 3418 aa-2.77□□□□□ -2.85
SCN1A-211ENST00000635893 CD163L1Q9NR16 1453 aa-2.77□□□□□ -2.85
SCN1A-211ENST00000635893 TSTD3H0UI37 97 aa-2.77□□□□□ -2.85
SCN1A-211ENST00000635893 MRPS10P82664 201 aaKnown RBP-2.77□□□□□ -2.85
SCN1A-211ENST00000635893 AIF1LQ9BQI0 150 aa-2.77□□□□□ -2.85
SCN1A-211ENST00000635893 DDA1Q9BW61 102 aa-2.77□□□□□ -2.85
SCN1A-211ENST00000635893 HSPB11Q9Y547 144 aa-2.77□□□□□ -2.85
SCN1A-211ENST00000635893 DBIP07108 87 aaKnown RBP-2.78□□□□□ -2.85
SCN1A-211ENST00000635893 FABP1P07148 127 aa-2.78□□□□□ -2.85
SCN1A-211ENST00000635893 SFTA3P0C7M3 94 aa-2.78□□□□□ -2.85
SCN1A-211ENST00000635893 Q0VG73 95 aa-2.78□□□□□ -2.85
SCN1A-211ENST00000635893 C12orf73Q69YU5 71 aa-2.78□□□□□ -2.85
SCN1A-211ENST00000635893 GAFA1Q96PS6 74 aa-2.78□□□□□ -2.85
SCN1A-211ENST00000635893 SPANXDQ9BXN6 97 aa-2.78□□□□□ -2.85
SCN1A-211ENST00000635893 PRO1854Q9UHT4 67 aa-2.78□□□□□ -2.85
SCN1A-211ENST00000635893 C20orf202A1L168 122 aa-2.79□□□□□ -2.86
SCN1A-211ENST00000635893 ANKRD36BQ8N2N9 1353 aa-2.79□□□□□ -2.86
SCN1A-211ENST00000635893 BAZ1AQ9NRL2 1556 aaPredicted RBP-2.79□□□□□ -2.86
SCN1A-211ENST00000635893 CCDC58Q4VC31 144 aa-2.8□□□□□ -2.86
SCN1A-211ENST00000635893 NCBP2-AS2Q69YL0 99 aa-2.8□□□□□ -2.86
SCN1A-211ENST00000635893 KCNRGQ8N5I3 272 aa-2.8□□□□□ -2.86
SCN1A-211ENST00000635893 MAP3K4Q9Y6R4 1608 aa-2.8□□□□□ -2.86
SCN1A-211ENST00000635893 CHD1O14646 1710 aa-2.8□□□□□ -2.86
SCN1A-211ENST00000635893 LTN1O94822 1766 aa-2.8□□□□□ -2.86
SCN1A-211ENST00000635893 VPS13AQ96RL7 3174 aa-2.81□□□□□ -2.86
SCN1A-211ENST00000635893 OVOS2A0A0J9YW53 1432 aa-2.81□□□□□ -2.86
SCN1A-211ENST00000635893 OVOS2Q6IE36 1432 aa-2.81□□□□□ -2.86
SCN1A-211ENST00000635893 F6UZH7 168 aa-2.81□□□□□ -2.86
SCN1A-211ENST00000635893 ANP32BQ92688 251 aaKnown RBP-2.81□□□□□ -2.86
SCN1A-211ENST00000635893 LSM10Q969L4 123 aaKnown RBP-2.81□□□□□ -2.86
SCN1A-211ENST00000635893 TJP1Q07157 1748 aa-2.82□□□□□ -2.86
SCN1A-211ENST00000635893 NRXN3Q9Y4C0 1643 aa-2.82□□□□□ -2.86
SCN1A-211ENST00000635893 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP-2.82□□□□□ -2.86
SCN1A-211ENST00000635893 SCAPERQ9BY12 1400 aa-2.82□□□□□ -2.86
SCN1A-211ENST00000635893 MINOS1Q5TGZ0 78 aa-2.82□□□□□ -2.86
SCN1A-211ENST00000635893 KIF14Q15058 1648 aa-2.82□□□□□ -2.86
SCN1A-211ENST00000635893 PREX2Q70Z35 1606 aa-2.82□□□□□ -2.86
SCN1A-211ENST00000635893 NEXMIFQ5QGS0 1516 aa-2.83□□□□□ -2.86
SCN1A-211ENST00000635893 TMEM218A2RU14 115 aa-2.83□□□□□ -2.86
SCN1A-211ENST00000635893 TMEM262E9PQX1 116 aa-2.83□□□□□ -2.86
SCN1A-211ENST00000635893 GNG11P61952 73 aa-2.83□□□□□ -2.86
SCN1A-211ENST00000635893 SMIM3Q9BZL3 60 aa-2.83□□□□□ -2.86
SCN1A-211ENST00000635893 SPANXCQ9NY87 97 aa-2.83□□□□□ -2.86
SCN1A-211ENST00000635893 CC2D2AQ9P2K1 1620 aa-2.83□□□□□ -2.86
SCN1A-211ENST00000635893 XIRP2A4UGR9 3374 aa-2.84□□□□□ -2.86
SCN1A-211ENST00000635893 TRAV21A0A0B4J279 112 aa-2.84□□□□□ -2.86
SCN1A-211ENST00000635893 IQCF6A8MYZ5 107 aa-2.84□□□□□ -2.86
SCN1A-211ENST00000635893 MIF4GDA9UHW6 222 aaKnown RBP-2.84□□□□□ -2.86
SCN1A-211ENST00000635893 TSPAN19P0C672 248 aa-2.84□□□□□ -2.86
SCN1A-211ENST00000635893 FCER1GP30273 86 aa-2.84□□□□□ -2.86
SCN1A-211ENST00000635893 GUCA1AP43080 201 aaPredicted RBP-2.84□□□□□ -2.86
SCN1A-211ENST00000635893 ZNF436-AS1Q8NC38 126 aaPredicted RBP-2.84□□□□□ -2.86
SCN1A-211ENST00000635893 CLASP1Q7Z460 1538 aa-2.84□□□□□ -2.86
SCN1A-211ENST00000635893 RICTORQ6R327 1708 aa-2.85□□□□□ -2.86
SCN1A-211ENST00000635893 CCNB3Q8WWL7 1395 aa-2.85□□□□□ -2.87
SCN1A-211ENST00000635893 PPP3R2Q96LZ3 170 aa-2.85□□□□□ -2.87
SCN1A-211ENST00000635893 CFTRP13569 1480 aa-2.85□□□□□ -2.87
SCN1A-211ENST00000635893 NRAPQ86VF7 1730 aa-2.85□□□□□ -2.87
SCN1A-211ENST00000635893 J3QR89 54 aa-2.86□□□□□ -2.87
SCN1A-211ENST00000635893 RERGLQ9H628 205 aa-2.86□□□□□ -2.87
SCN1A-211ENST00000635893 CRYM-AS1A6NIL9 109 aa-2.87□□□□□ -2.87
SCN1A-211ENST00000635893 D6R8Y8 96 aa-2.87□□□□□ -2.87
SCN1A-211ENST00000635893 K7ERU9 68 aa-2.87□□□□□ -2.87
SCN1A-211ENST00000635893 MUSTN1Q8IVN3 82 aa-2.87□□□□□ -2.87
SCN1A-211ENST00000635893 C1orf54Q8WWF1 131 aa-2.87□□□□□ -2.87
SCN1A-211ENST00000635893 GSKIPQ9P0R6 139 aa-2.87□□□□□ -2.87
SCN1A-211ENST00000635893 ABCA3Q99758 1704 aa-2.88□□□□□ -2.87
SCN1A-211ENST00000635893 FAM208AQ9UK61 1670 aaKnown RBP-2.88□□□□□ -2.87
SCN1A-211ENST00000635893 NBEAP1P0C6P0 100 aa-2.88□□□□□ -2.87
SCN1A-211ENST00000635893 SMIM15Q7Z3B0 74 aa-2.88□□□□□ -2.87
SCN1A-211ENST00000635893 CGREF1Q99674 301 aa-2.88□□□□□ -2.87
SCN1A-211ENST00000635893 C20orf78Q9BR46 151 aa-2.88□□□□□ -2.87
SCN1A-211ENST00000635893 C6orf48Q9UBA6 75 aa-2.88□□□□□ -2.87
SCN1A-211ENST00000635893 DIP2BQ9P265 1576 aa-2.88□□□□□ -2.87
SCN1A-211ENST00000635893 ABCC2Q92887 1545 aa-2.88□□□□□ -2.87
SCN1A-211ENST00000635893 TRBV25-1A0A075B6N4 114 aa-2.89□□□□□ -2.87
SCN1A-211ENST00000635893 DEFB131BA0A096LNP1 70 aa-2.89□□□□□ -2.87
SCN1A-211ENST00000635893 A0A1B0GUT8 65 aa-2.89□□□□□ -2.87
SCN1A-211ENST00000635893 NAP1L6A6NFF2 107 aa-2.89□□□□□ -2.87
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms