RNA–Protein interactions for RNA: ENST00000635776.1

SCN1A-210, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 10,107 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-210ENST00000635776 LINC00336Q6ZUF6 198 aa2.84□□□□□ -1.95
SCN1A-210ENST00000635776 LINC00208Q96KT6 92 aa2.84□□□□□ -1.95
SCN1A-210ENST00000635776 H0Y9P7 68 aa2.84□□□□□ -1.95
SCN1A-210ENST00000635776 PRO0628Q9UI54 55 aa2.84□□□□□ -1.95
SCN1A-210ENST00000635776 TRAV22A0A0B4J277 110 aa2.84□□□□□ -1.96
SCN1A-210ENST00000635776 DSCR10P59022 87 aa2.84□□□□□ -1.96
SCN1A-210ENST00000635776 LINC00483Q53H64 154 aa2.84□□□□□ -1.96
SCN1A-210ENST00000635776 IGLV7-43P04211 117 aa2.84□□□□□ -1.96
SCN1A-210ENST00000635776 TACC2O95359 2948 aa2.84□□□□□ -1.96
SCN1A-210ENST00000635776 ITPR2Q14571 2701 aa2.84□□□□□ -1.96
SCN1A-210ENST00000635776 CHKB-CPT1BH3BT56 60 aa2.83□□□□□ -1.96
SCN1A-210ENST00000635776 PRR4Q16378 134 aa2.83□□□□□ -1.96
SCN1A-210ENST00000635776 Q6ZRN7 208 aaPredicted RBP2.83□□□□□ -1.96
SCN1A-210ENST00000635776 ZANQ9Y493 2812 aa2.83□□□□□ -1.96
SCN1A-210ENST00000635776 FAM229BQ4G0N7 80 aa2.83□□□□□ -1.96
SCN1A-210ENST00000635776 SPANXA2-OT1Q8N9U9 137 aa2.83□□□□□ -1.96
SCN1A-210ENST00000635776 BSNQ9UPA5 3926 aa2.83□□□□□ -1.96
SCN1A-210ENST00000635776 PSORS1C2Q9UIG4 136 aa2.83□□□□□ -1.96
SCN1A-210ENST00000635776 HIVEP1P15822 2718 aa2.83□□□□□ -1.96
SCN1A-210ENST00000635776 LOC101927531A0A1B0GV80 90 aa2.83□□□□□ -1.96
SCN1A-210ENST00000635776 ZFHX4Q86UP3 3567 aa2.83□□□□□ -1.96
SCN1A-210ENST00000635776 GCN1Q92616 2671 aaKnown RBP2.82□□□□□ -1.96
SCN1A-210ENST00000635776 MXRA5Q9NR99 2828 aa2.82□□□□□ -1.96
SCN1A-210ENST00000635776 ANK3Q12955 4377 aaKnown RBP2.82□□□□□ -1.96
SCN1A-210ENST00000635776 SPAG11AQ6PDA7 123 aa2.82□□□□□ -1.96
SCN1A-210ENST00000635776 A0A1B0GVX0 72 aa2.82□□□□□ -1.96
SCN1A-210ENST00000635776 MRPL34Q9BQ48 92 aaKnown RBP2.82□□□□□ -1.96
SCN1A-210ENST00000635776 CYP4F30PQ9H0H9 118 aa2.82□□□□□ -1.96
SCN1A-210ENST00000635776 DCHS1Q96JQ0 3298 aa2.81□□□□□ -1.96
SCN1A-210ENST00000635776 KRTAP7-1Q8IUC3 87 aa2.81□□□□□ -1.96
SCN1A-210ENST00000635776 C1orf64Q8NEQ6 169 aa2.81□□□□□ -1.96
SCN1A-210ENST00000635776 LINC00472Q9H8W2 130 aa2.81□□□□□ -1.96
SCN1A-210ENST00000635776 DCHS2Q6V1P9 2916 aa2.81□□□□□ -1.96
SCN1A-210ENST00000635776 IGHV6-1A0A0B4J1U7 121 aa2.81□□□□□ -1.96
SCN1A-210ENST00000635776 C8orf17Q9NRJ1 99 aa2.81□□□□□ -1.96
SCN1A-210ENST00000635776 NIPBLQ6KC79 2804 aaeCLIP2.81□□□□□ -1.96
SCN1A-210ENST00000635776 MAST4O15021 2626 aa2.81□□□□□ -1.96
SCN1A-210ENST00000635776 FAM229AH3BQW9 127 aa2.81□□□□□ -1.96
SCN1A-210ENST00000635776 KRTAP13-1Q8IUC0 172 aa2.8□□□□□ -1.96
SCN1A-210ENST00000635776 CIRBP-AS1Q8TBR5 109 aa2.8□□□□□ -1.96
SCN1A-210ENST00000635776 LCE6AA0A183 80 aa2.8□□□□□ -1.96
SCN1A-210ENST00000635776 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP2.8□□□□□ -1.96
SCN1A-210ENST00000635776 MAP1AP78559 2803 aaPredicted RBP2.8□□□□□ -1.96
SCN1A-210ENST00000635776 H3BS24 57 aa2.8□□□□□ -1.96
SCN1A-210ENST00000635776 CELSR2Q9HCU4 2923 aa2.79□□□□□ -1.96
SCN1A-210ENST00000635776 DEFB116Q30KQ4 102 aa2.79□□□□□ -1.96
SCN1A-210ENST00000635776 SPINK6Q6UWN8 80 aa2.79□□□□□ -1.96
SCN1A-210ENST00000635776 MGAM2Q2M2H8 2515 aa2.79□□□□□ -1.96
SCN1A-210ENST00000635776 ASB16-AS1Q495Z4 193 aa2.79□□□□□ -1.96
SCN1A-210ENST00000635776 BAHCC1Q9P281 2608 aa2.78□□□□□ -1.96
SCN1A-210ENST00000635776 TENM4Q6N022 2769 aa2.78□□□□□ -1.96
SCN1A-210ENST00000635776 SPINK1P00995 79 aa2.78□□□□□ -1.97
SCN1A-210ENST00000635776 FP248Q71RG6 208 aaPredicted RBP2.78□□□□□ -1.97
SCN1A-210ENST00000635776 RELNP78509 3460 aa2.77□□□□□ -1.97
SCN1A-210ENST00000635776 LAMA5O15230 3695 aa2.77□□□□□ -1.97
SCN1A-210ENST00000635776 LINC00313P59037 77 aa2.77□□□□□ -1.97
SCN1A-210ENST00000635776 MMP24-AS1A0A0U1RRL7 71 aa2.77□□□□□ -1.97
SCN1A-210ENST00000635776 KRTAP29-1A8MX34 341 aaPredicted RBP2.77□□□□□ -1.97
SCN1A-210ENST00000635776 ASPMQ8IZT6 3477 aa2.77□□□□□ -1.97
SCN1A-210ENST00000635776 COL6A5A8TX70 2615 aa2.77□□□□□ -1.97
SCN1A-210ENST00000635776 ZCCHC13Q8WW36 166 aaKnown RBP2.76□□□□□ -1.97
SCN1A-210ENST00000635776 STAB1Q9NY15 2570 aa2.76□□□□□ -1.97
SCN1A-210ENST00000635776 ACYP2P14621 99 aa2.75□□□□□ -1.97
SCN1A-210ENST00000635776 TYMSOSQ8TAI1 123 aa2.75□□□□□ -1.97
SCN1A-210ENST00000635776 OTOGQ6ZRI0 2925 aa2.75□□□□□ -1.97
SCN1A-210ENST00000635776 RPS29P62273 56 aaKnown RBP2.75□□□□□ -1.97
SCN1A-210ENST00000635776 IGLV7-46A0A075B6I9 117 aa2.75□□□□□ -1.97
SCN1A-210ENST00000635776 NBEAL2Q6ZNJ1 2754 aa2.74□□□□□ -1.97
SCN1A-210ENST00000635776 PLA2G1BP04054 148 aaKnown RBP2.74□□□□□ -1.97
SCN1A-210ENST00000635776 Q1T7F1 81 aa2.73□□□□□ -1.97
SCN1A-210ENST00000635776 SPENQ96T58 3664 aaKnown RBP2.73□□□□□ -1.97
SCN1A-210ENST00000635776 PANO1I0J062 215 aa2.73□□□□□ -1.97
SCN1A-210ENST00000635776 NF1P21359 2839 aa2.72□□□□□ -1.97
SCN1A-210ENST00000635776 A0A0G2JQZ4 141 aa2.72□□□□□ -1.97
SCN1A-210ENST00000635776 PCOTHQ58A44 107 aa2.72□□□□□ -1.97
SCN1A-210ENST00000635776 NOTCH1P46531 2555 aa2.72□□□□□ -1.97
SCN1A-210ENST00000635776 LINC00304Q8N9R0 145 aa2.72□□□□□ -1.97
SCN1A-210ENST00000635776 CRYBG3Q68DQ2 2970 aa2.72□□□□□ -1.97
SCN1A-210ENST00000635776 CELSR1Q9NYQ6 3014 aa2.72□□□□□ -1.97
SCN1A-210ENST00000635776 KRTAP11-1Q8IUC1 163 aa2.72□□□□□ -1.97
SCN1A-210ENST00000635776 Q6ZSA8 131 aa2.72□□□□□ -1.97
SCN1A-210ENST00000635776 SMG1Q96Q15 3661 aaKnown RBP2.71□□□□□ -1.98
SCN1A-210ENST00000635776 ASH1LQ9NR48 2969 aaKnown RBP2.71□□□□□ -1.98
SCN1A-210ENST00000635776 COA5Q86WW8 74 aa2.71□□□□□ -1.98
SCN1A-210ENST00000635776 A8MUN3 132 aa2.7□□□□□ -1.98
SCN1A-210ENST00000635776 RETNLBQ9BQ08 111 aa2.69□□□□□ -1.98
SCN1A-210ENST00000635776 CAMK2N1Q7Z7J9 78 aa2.69□□□□□ -1.98
SCN1A-210ENST00000635776 Q96NJ1 140 aa2.69□□□□□ -1.98
SCN1A-210ENST00000635776 KRTAP10-1P60331 282 aa2.68□□□□□ -1.98
SCN1A-210ENST00000635776 C7orf65Q6ZTY9 151 aa2.68□□□□□ -1.98
SCN1A-210ENST00000635776 ANAPC11Q9NYG5 84 aa2.68□□□□□ -1.98
SCN1A-210ENST00000635776 KRTAP10-2P60368 255 aa2.68□□□□□ -1.98
SCN1A-210ENST00000635776 STAB2Q8WWQ8 2551 aa2.67□□□□□ -1.98
SCN1A-210ENST00000635776 Q8N9P0 234 aaPredicted RBP2.67□□□□□ -1.98
SCN1A-210ENST00000635776 NBEAL1Q6ZS30 2694 aa2.67□□□□□ -1.98
SCN1A-210ENST00000635776 LINC01558Q9Y6Z2 57 aa2.66□□□□□ -1.98
SCN1A-210ENST00000635776 SPINT4Q6UDR6 99 aa2.66□□□□□ -1.98
SCN1A-210ENST00000635776 TENM1Q9UKZ4 2725 aa2.66□□□□□ -1.98
SCN1A-210ENST00000635776 IGKV2D-30A0A075B6S6 120 aa2.66□□□□□ -1.98
SCN1A-210ENST00000635776 IGKV2-30P06310 120 aa2.66□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms