RNA–Protein interactions for RNA: ENST00000617445.4

CCDC28A-203, Transcript of coiled-coil domain containing 28A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28A, Length 1,240 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-203ENST00000617445 LINC00575Q6W349 94 aa10.38□□□□□ -0.75
CCDC28A-203ENST00000617445 TCL1BO95988 128 aa10.37□□□□□ -0.75
CCDC28A-203ENST00000617445 hADV29S1A0JD25 119 aa10.36□□□□□ -0.75
CCDC28A-203ENST00000617445 PCOTHQ58A44 107 aa10.35□□□□□ -0.75
CCDC28A-203ENST00000617445 Q6JHZ5 121 aa10.34□□□□□ -0.75
CCDC28A-203ENST00000617445 C12orf57Q99622 126 aa10.34□□□□□ -0.75
CCDC28A-203ENST00000617445 A0A0G2JQZ4 141 aa10.33□□□□□ -0.76
CCDC28A-203ENST00000617445 Q6ZQY7 126 aa10.33□□□□□ -0.76
CCDC28A-203ENST00000617445 IGLV8-61A0A075B6I0 122 aa10.31□□□□□ -0.76
CCDC28A-203ENST00000617445 PYY3Q5JQD4 70 aa10.31□□□□□ -0.76
CCDC28A-203ENST00000617445 BVES-AS1Q5T3Y7 98 aa10.31□□□□□ -0.76
CCDC28A-203ENST00000617445 C2orf91Q6ZV80 131 aa10.31□□□□□ -0.76
CCDC28A-203ENST00000617445 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP10.3□□□□□ -0.76
CCDC28A-203ENST00000617445 PPDPFLQ8WWR9 84 aa10.3□□□□□ -0.76
CCDC28A-203ENST00000617445 CFC1BP0CG36 223 aa10.29□□□□□ -0.76
CCDC28A-203ENST00000617445 CFC1P0CG37 223 aa10.29□□□□□ -0.76
CCDC28A-203ENST00000617445 RAB37Q96AX2 223 aa10.29□□□□□ -0.76
CCDC28A-203ENST00000617445 TMA7Q9Y2S6 64 aaKnown RBP10.29□□□□□ -0.76
CCDC28A-203ENST00000617445 A0A0B4J2C4 111 aa10.27□□□□□ -0.77
CCDC28A-203ENST00000617445 OCIAD2Q56VL3 154 aa10.27□□□□□ -0.77
CCDC28A-203ENST00000617445 CLEC2BQ92478 149 aa10.27□□□□□ -0.77
CCDC28A-203ENST00000617445 CEND1Q8N111 149 aa10.26□□□□□ -0.77
CCDC28A-203ENST00000617445 LCE2CQ5TA81 110 aa10.25□□□□□ -0.77
CCDC28A-203ENST00000617445 TRBV7-7A0A0K0K1E9 115 aa10.24□□□□□ -0.77
CCDC28A-203ENST00000617445 TMEM238LA0A1B0GVL6 79 aa10.24□□□□□ -0.77
CCDC28A-203ENST00000617445 A6NJY4 79 aa10.24□□□□□ -0.77
CCDC28A-203ENST00000617445 RPL37P61927 97 aaKnown RBP10.24□□□□□ -0.77
CCDC28A-203ENST00000617445 SNHG12Q9BXW3 62 aa10.24□□□□□ -0.77
CCDC28A-203ENST00000617445 SNCGO76070 127 aa10.23□□□□□ -0.77
CCDC28A-203ENST00000617445 IGFL1Q6UW32 110 aa10.23□□□□□ -0.77
CCDC28A-203ENST00000617445 KRTAP19-2Q3LHN2 52 aa10.22□□□□□ -0.77
CCDC28A-203ENST00000617445 H0YGX0 51 aa10.2□□□□□ -0.78
CCDC28A-203ENST00000617445 PRO1854Q9UHT4 67 aa10.2□□□□□ -0.78
CCDC28A-203ENST00000617445 FXYD2P54710 66 aa10.19□□□□□ -0.78
CCDC28A-203ENST00000617445 KRTAP9-6A0A140TA67 174 aa10.17□□□□□ -0.78
CCDC28A-203ENST00000617445 HSD52Q0P140 79 aa10.17□□□□□ -0.78
CCDC28A-203ENST00000617445 UQCR10Q9UDW1 63 aa10.15□□□□□ -0.78
CCDC28A-203ENST00000617445 MT1HP80294 61 aa10.14□□□□□ -0.79
CCDC28A-203ENST00000617445 GHRHP01286 108 aa10.13□□□□□ -0.79
CCDC28A-203ENST00000617445 LST1O00453 97 aa10.12□□□□□ -0.79
CCDC28A-203ENST00000617445 Q6Q795 121 aa10.12□□□□□ -0.79
CCDC28A-203ENST00000617445 A0A1B0GX51 115 aa10.11□□□□□ -0.79
CCDC28A-203ENST00000617445 H3BUT2 72 aa10.11□□□□□ -0.79
CCDC28A-203ENST00000617445 FAM218AQ96MZ4 157 aa10.11□□□□□ -0.79
CCDC28A-203ENST00000617445 SS18L2Q9UHA2 77 aa10.11□□□□□ -0.79
CCDC28A-203ENST00000617445 NDUFV3P56181 108 aaKnown RBP10.08□□□□□ -0.8
CCDC28A-203ENST00000617445 TEN1Q86WV5 123 aa10.08□□□□□ -0.8
CCDC28A-203ENST00000617445 TRIAP1O43715 76 aa10.07□□□□□ -0.8
CCDC28A-203ENST00000617445 Q75L30 129 aa10.07□□□□□ -0.8
CCDC28A-203ENST00000617445 OBSCN-AS1Q96MR7 158 aa10.07□□□□□ -0.8
CCDC28A-203ENST00000617445 KRTAP3-3Q9BYR6 98 aa10.07□□□□□ -0.8
CCDC28A-203ENST00000617445 KRTAP3-2Q9BYR7 98 aa10.07□□□□□ -0.8
CCDC28A-203ENST00000617445 ATP11AUNQ6ZP68 121 aa10.06□□□□□ -0.8
CCDC28A-203ENST00000617445 COX6B2Q6YFQ2 88 aa10.05□□□□□ -0.8
CCDC28A-203ENST00000617445 K7ERJ3 54 aa10.04□□□□□ -0.8
CCDC28A-203ENST00000617445 COX6CP09669 75 aa10.03□□□□□ -0.8
CCDC28A-203ENST00000617445 PSMB2P49721 201 aa10.03□□□□□ -0.8
CCDC28A-203ENST00000617445 H3BMG7 143 aa10.01□□□□□ -0.81
CCDC28A-203ENST00000617445 FABP2P12104 132 aa10□□□□□ -0.81
CCDC28A-203ENST00000617445 H3BQ85 93 aa9.99□□□□□ -0.81
CCDC28A-203ENST00000617445 DNAL4O96015 105 aa9.99□□□□□ -0.81
CCDC28A-203ENST00000617445 Q96NJ1 140 aa9.99□□□□□ -0.81
CCDC28A-203ENST00000617445 A0A087WSZ3 146 aa9.98□□□□□ -0.81
CCDC28A-203ENST00000617445 M0R2T5 61 aa9.98□□□□□ -0.81
CCDC28A-203ENST00000617445 LORP23490 312 aaPredicted RBP9.97□□□□□ -0.81
CCDC28A-203ENST00000617445 KRTAP10-6P60371 365 aaPredicted RBP9.97□□□□□ -0.81
CCDC28A-203ENST00000617445 SMIM6P0DI80 62 aa9.96□□□□□ -0.82
CCDC28A-203ENST00000617445 ORMDL1Q9P0S3 153 aa9.96□□□□□ -0.82
CCDC28A-203ENST00000617445 C20orf166-AS1Q96NR2 134 aa9.95□□□□□ -0.82
CCDC28A-203ENST00000617445 A8MUU9 505 aa9.92□□□□□ -0.82
CCDC28A-203ENST00000617445 TMEM256-PLSCR3K7ERE1 68 aa9.92□□□□□ -0.82
CCDC28A-203ENST00000617445 M0R143 59 aa9.91□□□□□ -0.82
CCDC28A-203ENST00000617445 SCGB1C2P0DMR2 95 aa9.91□□□□□ -0.82
CCDC28A-203ENST00000617445 CRCT1Q9UGL9 99 aa9.91□□□□□ -0.82
CCDC28A-203ENST00000617445 A0A1W2PNM2 257 aa9.9□□□□□ -0.82
CCDC28A-203ENST00000617445 TRACP01848 142 aa9.9□□□□□ -0.82
CCDC28A-203ENST00000617445 ANKRD29Q8N6D5 301 aa9.9□□□□□ -0.82
CCDC28A-203ENST00000617445 FLGP20930 4061 aaPredicted RBP9.9□□□□□ -0.83
CCDC28A-203ENST00000617445 TRBV7-4A0A0J9YYF1 115 aa9.89□□□□□ -0.83
CCDC28A-203ENST00000617445 UBE2V1Q13404 147 aa9.85□□□□□ -0.83
CCDC28A-203ENST00000617445 SIGMAR1Q99720 223 aa9.85□□□□□ -0.83
CCDC28A-203ENST00000617445 TSTD3H0UI37 97 aa9.83□□□□□ -0.84
CCDC28A-203ENST00000617445 LINC00313P59037 77 aa9.83□□□□□ -0.84
CCDC28A-203ENST00000617445 TRBV20-1A0A075B6N2 111 aa9.82□□□□□ -0.84
CCDC28A-203ENST00000617445 DSCR10P59022 87 aa9.82□□□□□ -0.84
CCDC28A-203ENST00000617445 FSIP2Q5CZC0 6907 aa9.82□□□□□ -0.84
CCDC28A-203ENST00000617445 IGKV4-1P06312 121 aa9.81□□□□□ -0.84
CCDC28A-203ENST00000617445 A0A1B0GV72 72 aa9.8□□□□□ -0.84
CCDC28A-203ENST00000617445 LOC105371267A0A1B0GV96 52 aa9.79□□□□□ -0.84
CCDC28A-203ENST00000617445 CCKP06307 115 aa9.79□□□□□ -0.84
CCDC28A-203ENST00000617445 BAALC-AS2P0C853 105 aa9.77□□□□□ -0.85
CCDC28A-203ENST00000617445 LINC00472Q9H8W2 130 aa9.77□□□□□ -0.85
CCDC28A-203ENST00000617445 RBM3P98179 157 aaKnown RBP9.76□□□□□ -0.85
CCDC28A-203ENST00000617445 ATXN8Q156A1 80 aa9.76□□□□□ -0.85
CCDC28A-203ENST00000617445 KRTAP16-1A8MUX0 517 aa9.74□□□□□ -0.85
CCDC28A-203ENST00000617445 NAA38Q9BRA0 125 aaKnown RBP9.74□□□□□ -0.85
CCDC28A-203ENST00000617445 DSCR8Q96T75 97 aa9.73□□□□□ -0.85
CCDC28A-203ENST00000617445 LYRM7Q5U5X0 104 aa9.72□□□□□ -0.85
CCDC28A-203ENST00000617445 C21orf62-AS1Q17RA5 79 aa9.71□□□□□ -0.86
CCDC28A-203ENST00000617445 DEFB116Q30KQ4 102 aa9.7□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 258.7 ms