RNA–Protein interactions for RNA: ENST00000601816.3

PNKP-216, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 3

Gene PNKP, Length 682 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-216ENST00000601816 BVES-AS1Q5T3Y7 98 aa14.16□□□□□ -0.14
PNKP-216ENST00000601816 KRTAP9-2Q9BYQ4 174 aa14.15□□□□□ -0.14
PNKP-216ENST00000601816 PCOTHQ58A44 107 aa14.14□□□□□ -0.15
PNKP-216ENST00000601816 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP14.14□□□□□ -0.15
PNKP-216ENST00000601816 Q6JHZ5 121 aa14.13□□□□□ -0.15
PNKP-216ENST00000601816 C14orf144Q96I85 54 aa14.11□□□□□ -0.15
PNKP-216ENST00000601816 IGLV8-61A0A075B6I0 122 aa14.1□□□□□ -0.15
PNKP-216ENST00000601816 CLEC2BQ92478 149 aa14.1□□□□□ -0.15
PNKP-216ENST00000601816 PAM16Q9Y3D7 125 aa14.09□□□□□ -0.15
PNKP-216ENST00000601816 SPATA45Q537H7 98 aa14.08□□□□□ -0.16
PNKP-216ENST00000601816 OCIAD2Q56VL3 154 aa14.08□□□□□ -0.16
PNKP-216ENST00000601816 PPDPFLQ8WWR9 84 aa14.08□□□□□ -0.16
PNKP-216ENST00000601816 CFC1BP0CG36 223 aa14.07□□□□□ -0.16
PNKP-216ENST00000601816 CFC1P0CG37 223 aa14.07□□□□□ -0.16
PNKP-216ENST00000601816 IGFL1Q6UW32 110 aa14.07□□□□□ -0.16
PNKP-216ENST00000601816 RAB37Q96AX2 223 aa14.07□□□□□ -0.16
PNKP-216ENST00000601816 HIGD1BQ9P298 99 aa14.07□□□□□ -0.16
PNKP-216ENST00000601816 SNHG12Q9BXW3 62 aa14.05□□□□□ -0.16
PNKP-216ENST00000601816 TRBV7-7A0A0K0K1E9 115 aa14.04□□□□□ -0.16
PNKP-216ENST00000601816 VAMP8Q9BV40 100 aa14.04□□□□□ -0.16
PNKP-216ENST00000601816 A0A0B4J2C4 111 aa14.02□□□□□ -0.17
PNKP-216ENST00000601816 C2orf91Q6ZV80 131 aa14□□□□□ -0.17
PNKP-216ENST00000601816 SNCGO76070 127 aa13.99□□□□□ -0.17
PNKP-216ENST00000601816 RPL37P61927 97 aaKnown RBP13.99□□□□□ -0.17
PNKP-216ENST00000601816 H0YGX0 51 aa13.97□□□□□ -0.17
PNKP-216ENST00000601816 H3BUT2 72 aa13.97□□□□□ -0.17
PNKP-216ENST00000601816 LCE2CQ5TA81 110 aa13.96□□□□□ -0.17
PNKP-216ENST00000601816 CEND1Q8N111 149 aa13.93□□□□□ -0.18
PNKP-216ENST00000601816 KRTAP19-2Q3LHN2 52 aa13.92□□□□□ -0.18
PNKP-216ENST00000601816 FAM218AQ96MZ4 157 aa13.92□□□□□ -0.18
PNKP-216ENST00000601816 TMEM238LA0A1B0GVL6 79 aa13.91□□□□□ -0.18
PNKP-216ENST00000601816 A6NJY4 79 aa13.91□□□□□ -0.18
PNKP-216ENST00000601816 PRO1854Q9UHT4 67 aa13.89□□□□□ -0.19
PNKP-216ENST00000601816 LST1O00453 97 aa13.86□□□□□ -0.19
PNKP-216ENST00000601816 NDUFV3P56181 108 aaKnown RBP13.86□□□□□ -0.19
PNKP-216ENST00000601816 FXYD2P54710 66 aa13.85□□□□□ -0.19
PNKP-216ENST00000601816 A0A1B0GX51 115 aa13.84□□□□□ -0.19
PNKP-216ENST00000601816 GHRHP01286 108 aa13.83□□□□□ -0.2
PNKP-216ENST00000601816 Q6Q795 121 aa13.83□□□□□ -0.2
PNKP-216ENST00000601816 SS18L2Q9UHA2 77 aa13.83□□□□□ -0.2
PNKP-216ENST00000601816 OBSCN-AS1Q96MR7 158 aa13.82□□□□□ -0.2
PNKP-216ENST00000601816 MT1HP80294 61 aa13.81□□□□□ -0.2
PNKP-216ENST00000601816 TEN1Q86WV5 123 aa13.81□□□□□ -0.2
PNKP-216ENST00000601816 FABP2P12104 132 aa13.79□□□□□ -0.2
PNKP-216ENST00000601816 TRIAP1O43715 76 aa13.78□□□□□ -0.2
PNKP-216ENST00000601816 H3BMG7 143 aa13.77□□□□□ -0.21
PNKP-216ENST00000601816 PYY3Q5JQD4 70 aa13.77□□□□□ -0.21
PNKP-216ENST00000601816 HSD52Q0P140 79 aa13.76□□□□□ -0.21
PNKP-216ENST00000601816 Q75L30 129 aa13.74□□□□□ -0.21
PNKP-216ENST00000601816 A0A087WSZ3 146 aa13.73□□□□□ -0.21
PNKP-216ENST00000601816 ATP11AUNQ6ZP68 121 aa13.71□□□□□ -0.21
PNKP-216ENST00000601816 KRTAP9-6A0A140TA67 174 aa13.7□□□□□ -0.22
PNKP-216ENST00000601816 DNAL4O96015 105 aa13.7□□□□□ -0.22
PNKP-216ENST00000601816 PSMB2P49721 201 aa13.7□□□□□ -0.22
PNKP-216ENST00000601816 LCE2DQ5TA82 110 aaPredicted RBP13.7□□□□□ -0.22
PNKP-216ENST00000601816 COX6B2Q6YFQ2 88 aa13.7□□□□□ -0.22
PNKP-216ENST00000601816 K7ERJ3 54 aa13.69□□□□□ -0.22
PNKP-216ENST00000601816 Q96NJ1 140 aa13.69□□□□□ -0.22
PNKP-216ENST00000601816 ORMDL1Q9P0S3 153 aa13.66□□□□□ -0.22
PNKP-216ENST00000601816 A0A1W2PNM2 257 aa13.64□□□□□ -0.23
PNKP-216ENST00000601816 H3BQ85 93 aa13.64□□□□□ -0.23
PNKP-216ENST00000601816 COX6CP09669 75 aa13.64□□□□□ -0.23
PNKP-216ENST00000601816 UQCR10Q9UDW1 63 aa13.62□□□□□ -0.23
PNKP-216ENST00000601816 TMA7Q9Y2S6 64 aaKnown RBP13.62□□□□□ -0.23
PNKP-216ENST00000601816 ANKRD29Q8N6D5 301 aa13.61□□□□□ -0.23
PNKP-216ENST00000601816 A0A1B0GV72 72 aa13.6□□□□□ -0.23
PNKP-216ENST00000601816 M0R2T5 61 aa13.59□□□□□ -0.23
PNKP-216ENST00000601816 C20orf166-AS1Q96NR2 134 aa13.59□□□□□ -0.23
PNKP-216ENST00000601816 TMEM256-PLSCR3K7ERE1 68 aa13.58□□□□□ -0.24
PNKP-216ENST00000601816 SIGMAR1Q99720 223 aa13.57□□□□□ -0.24
PNKP-216ENST00000601816 TRBV7-4A0A0J9YYF1 115 aa13.56□□□□□ -0.24
PNKP-216ENST00000601816 A8MUU9 505 aa13.55□□□□□ -0.24
PNKP-216ENST00000601816 KRTAP10-6P60371 365 aaPredicted RBP13.55□□□□□ -0.24
PNKP-216ENST00000601816 LORP23490 312 aaPredicted RBP13.54□□□□□ -0.24
PNKP-216ENST00000601816 DSCR10P59022 87 aa13.53□□□□□ -0.24
PNKP-216ENST00000601816 FLGP20930 4061 aaPredicted RBP13.5□□□□□ -0.25
PNKP-216ENST00000601816 IGKV4-1P06312 121 aa13.49□□□□□ -0.25
PNKP-216ENST00000601816 UBE2V1Q13404 147 aa13.49□□□□□ -0.25
PNKP-216ENST00000601816 TRACP01848 142 aa13.48□□□□□ -0.25
PNKP-216ENST00000601816 CCKP06307 115 aa13.48□□□□□ -0.25
PNKP-216ENST00000601816 SCGB1C2P0DMR2 95 aa13.46□□□□□ -0.25
PNKP-216ENST00000601816 LINC00313P59037 77 aa13.45□□□□□ -0.26
PNKP-216ENST00000601816 LINC00472Q9H8W2 130 aa13.41□□□□□ -0.26
PNKP-216ENST00000601816 DEFB116Q30KQ4 102 aa13.4□□□□□ -0.26
PNKP-216ENST00000601816 KRTAP16-1A8MUX0 517 aa13.37□□□□□ -0.27
PNKP-216ENST00000601816 RBM3P98179 157 aaKnown RBP13.37□□□□□ -0.27
PNKP-216ENST00000601816 VPS25Q9BRG1 176 aa13.37□□□□□ -0.27
PNKP-216ENST00000601816 FSIP2Q5CZC0 6907 aa13.36□□□□□ -0.27
PNKP-216ENST00000601816 TRBV20-1A0A075B6N2 111 aa13.36□□□□□ -0.27
PNKP-216ENST00000601816 CRCT1Q9UGL9 99 aa13.36□□□□□ -0.27
PNKP-216ENST00000601816 DSCR8Q96T75 97 aa13.35□□□□□ -0.27
PNKP-216ENST00000601816 NOTCH2NLQ7Z3S9 236 aa13.33□□□□□ -0.28
PNKP-216ENST00000601816 IGHV6-1A0A0B4J1U7 121 aa13.32□□□□□ -0.28
PNKP-216ENST00000601816 BAALC-AS2P0C853 105 aa13.32□□□□□ -0.28
PNKP-216ENST00000601816 M0R143 59 aa13.28□□□□□ -0.28
PNKP-216ENST00000601816 C9JAW5 83 aa13.26□□□□□ -0.29
PNKP-216ENST00000601816 A0A1B0GVX0 72 aa13.24□□□□□ -0.29
PNKP-216ENST00000601816 C8orf87E5RJ46 101 aa13.24□□□□□ -0.29
PNKP-216ENST00000601816 C21orf62-AS1Q17RA5 79 aa13.24□□□□□ -0.29
PNKP-216ENST00000601816 ATXN8Q156A1 80 aa13.22□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 76.3 ms