RNA–Protein interactions for RNA: ENST00000600289.6

LSM4-206, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 1,113 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-206ENST00000600289 Q1RN00 199 aa9.14□□□□□ -0.95
LSM4-206ENST00000600289 RAB37Q96AX2 223 aa9.14□□□□□ -0.95
LSM4-206ENST00000600289 PRO1933Q9H354 126 aa9.14□□□□□ -0.95
LSM4-206ENST00000600289 CD164Q04900 197 aa9.13□□□□□ -0.95
LSM4-206ENST00000600289 MUC17Q685J3 4493 aa9.13□□□□□ -0.95
LSM4-206ENST00000600289 Q6ZQY7 126 aa9.11□□□□□ -0.95
LSM4-206ENST00000600289 LIMD2Q9BT23 127 aa9.11□□□□□ -0.95
LSM4-206ENST00000600289 HSD52Q0P140 79 aa9.1□□□□□ -0.95
LSM4-206ENST00000600289 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP9.1□□□□□ -0.95
LSM4-206ENST00000600289 PPDPFLQ8WWR9 84 aa9.1□□□□□ -0.95
LSM4-206ENST00000600289 FXYD2P54710 66 aa9.09□□□□□ -0.95
LSM4-206ENST00000600289 PRO1854Q9UHT4 67 aa9.09□□□□□ -0.95
LSM4-206ENST00000600289 H0YGX0 51 aa9.08□□□□□ -0.96
LSM4-206ENST00000600289 H7C2G1 150 aa9.08□□□□□ -0.96
LSM4-206ENST00000600289 UQCR10Q9UDW1 63 aa9.08□□□□□ -0.96
LSM4-206ENST00000600289 KRTAP13-3Q3SY46 172 aa9.07□□□□□ -0.96
LSM4-206ENST00000600289 Q5XG85 94 aa9.07□□□□□ -0.96
LSM4-206ENST00000600289 CDIP1Q9H305 208 aa9.07□□□□□ -0.96
LSM4-206ENST00000600289 IGLV8-61A0A075B6I0 122 aa9.05□□□□□ -0.96
LSM4-206ENST00000600289 F8WEM9 126 aa9.05□□□□□ -0.96
LSM4-206ENST00000600289 A0A1B0GX51 115 aa9.04□□□□□ -0.96
LSM4-206ENST00000600289 OCIAD2Q56VL3 154 aa9.04□□□□□ -0.96
LSM4-206ENST00000600289 HRCT1Q6UXD1 115 aa9.04□□□□□ -0.96
LSM4-206ENST00000600289 SNCGO76070 127 aa9.03□□□□□ -0.96
LSM4-206ENST00000600289 Q6JHZ5 121 aa9.02□□□□□ -0.97
LSM4-206ENST00000600289 FAM218AQ96MZ4 157 aa9.01□□□□□ -0.97
LSM4-206ENST00000600289 TRIAP1O43715 76 aa8.99□□□□□ -0.97
LSM4-206ENST00000600289 A0A0G2JQZ4 141 aa8.98□□□□□ -0.97
LSM4-206ENST00000600289 CLEC2BQ92478 149 aa8.98□□□□□ -0.97
LSM4-206ENST00000600289 GHRHP01286 108 aa8.97□□□□□ -0.97
LSM4-206ENST00000600289 SMIM6P0DI80 62 aa8.97□□□□□ -0.97
LSM4-206ENST00000600289 SNHG12Q9BXW3 62 aa8.97□□□□□ -0.97
LSM4-206ENST00000600289 K7ERJ3 54 aa8.96□□□□□ -0.98
LSM4-206ENST00000600289 IGFL1Q6UW32 110 aa8.96□□□□□ -0.98
LSM4-206ENST00000600289 TCL1BO95988 128 aa8.93□□□□□ -0.98
LSM4-206ENST00000600289 ASB16-AS1Q495Z4 193 aa8.93□□□□□ -0.98
LSM4-206ENST00000600289 C1orf195Q5TG92 126 aa8.93□□□□□ -0.98
LSM4-206ENST00000600289 TRBV7-7A0A0K0K1E9 115 aa8.92□□□□□ -0.98
LSM4-206ENST00000600289 COX6CP09669 75 aa8.92□□□□□ -0.98
LSM4-206ENST00000600289 XP32Q5T750 250 aa8.92□□□□□ -0.98
LSM4-206ENST00000600289 PSMB2P49721 201 aa8.91□□□□□ -0.98
LSM4-206ENST00000600289 NDUFV3P56181 108 aaKnown RBP8.91□□□□□ -0.98
LSM4-206ENST00000600289 H3BQ85 93 aa8.89□□□□□ -0.99
LSM4-206ENST00000600289 H3BUT2 72 aa8.89□□□□□ -0.99
LSM4-206ENST00000600289 Q6Q795 121 aa8.89□□□□□ -0.99
LSM4-206ENST00000600289 DNAL4O96015 105 aa8.88□□□□□ -0.99
LSM4-206ENST00000600289 SEC61BP60468 96 aaKnown RBP8.87□□□□□ -0.99
LSM4-206ENST00000600289 M0R143 59 aa8.86□□□□□ -0.99
LSM4-206ENST00000600289 ORMDL1Q9P0S3 153 aa8.86□□□□□ -0.99
LSM4-206ENST00000600289 FABP2P12104 132 aa8.85□□□□□ -0.99
LSM4-206ENST00000600289 KRTAP9-7A8MTY7 169 aa8.84□□□□□ -0.99
LSM4-206ENST00000600289 H3BMG7 143 aa8.84□□□□□ -0.99
LSM4-206ENST00000600289 TEN1Q86WV5 123 aa8.84□□□□□ -0.99
LSM4-206ENST00000600289 LOC105371267A0A1B0GV96 52 aa8.83□□□□□ -1
LSM4-206ENST00000600289 TRACP01848 142 aa8.83□□□□□ -1
LSM4-206ENST00000600289 TMEM256-PLSCR3K7ERE1 68 aa8.82□□□□□ -1
LSM4-206ENST00000600289 LST1O00453 97 aa8.82□□□□□ -1
LSM4-206ENST00000600289 SS18L2Q9UHA2 77 aa8.82□□□□□ -1
LSM4-206ENST00000600289 C9orf92A6NGG3 77 aa8.81□□□□□ -1
LSM4-206ENST00000600289 TSTD3H0UI37 97 aa8.8□□□□□ -1
LSM4-206ENST00000600289 UBE2V1Q13404 147 aa8.79□□□□□ -1
LSM4-206ENST00000600289 SCGB1C2P0DMR2 95 aa8.78□□□□□ -1
LSM4-206ENST00000600289 A0A1W2PNM2 257 aa8.75□□□□□ -1.01
LSM4-206ENST00000600289 A0A087WSZ3 146 aa8.74□□□□□ -1.01
LSM4-206ENST00000600289 TRBV7-4A0A0J9YYF1 115 aa8.74□□□□□ -1.01
LSM4-206ENST00000600289 ANKRD29Q8N6D5 301 aa8.74□□□□□ -1.01
LSM4-206ENST00000600289 KRTAP4-1Q9BYQ7 146 aa8.74□□□□□ -1.01
LSM4-206ENST00000600289 KRTAP9-1A8MXZ3 250 aaPredicted RBP8.72□□□□□ -1.01
LSM4-206ENST00000600289 RPL37P61927 97 aaKnown RBP8.71□□□□□ -1.02
LSM4-206ENST00000600289 ATXN8Q156A1 80 aa8.7□□□□□ -1.02
LSM4-206ENST00000600289 Q96NJ1 140 aa8.7□□□□□ -1.02
LSM4-206ENST00000600289 PCOTHQ58A44 107 aa8.69□□□□□ -1.02
LSM4-206ENST00000600289 LYRM7Q5U5X0 104 aa8.68□□□□□ -1.02
LSM4-206ENST00000600289 A0A1B0GV72 72 aa8.67□□□□□ -1.02
LSM4-206ENST00000600289 CCKP06307 115 aa8.67□□□□□ -1.02
LSM4-206ENST00000600289 BAALC-AS2P0C853 105 aa8.67□□□□□ -1.02
LSM4-206ENST00000600289 RBM3P98179 157 aaKnown RBP8.67□□□□□ -1.02
LSM4-206ENST00000600289 NAA38Q9BRA0 125 aaKnown RBP8.67□□□□□ -1.02
LSM4-206ENST00000600289 TRBV20-1A0A075B6N2 111 aa8.64□□□□□ -1.03
LSM4-206ENST00000600289 DSCR8Q96T75 97 aa8.64□□□□□ -1.03
LSM4-206ENST00000600289 BATFQ16520 125 aa8.63□□□□□ -1.03
LSM4-206ENST00000600289 OBSCN-AS1Q96MR7 158 aa8.63□□□□□ -1.03
LSM4-206ENST00000600289 C21orf62-AS1Q17RA5 79 aa8.62□□□□□ -1.03
LSM4-206ENST00000600289 Q75L30 129 aa8.62□□□□□ -1.03
LSM4-206ENST00000600289 JMJD7-PLA2G4BH0Y9G9 81 aa8.61□□□□□ -1.03
LSM4-206ENST00000600289 C9orf118A6NHY6 69 aa8.6□□□□□ -1.03
LSM4-206ENST00000600289 C9JAW5 83 aa8.6□□□□□ -1.03
LSM4-206ENST00000600289 LINC00472Q9H8W2 130 aa8.6□□□□□ -1.03
LSM4-206ENST00000600289 TAX1BP3O14907 124 aa8.58□□□□□ -1.04
LSM4-206ENST00000600289 SIGMAR1Q99720 223 aa8.58□□□□□ -1.04
LSM4-206ENST00000600289 LOC110117498A0A087WWA1 95 aa8.57□□□□□ -1.04
LSM4-206ENST00000600289 C20orf166-AS1Q96NR2 134 aa8.57□□□□□ -1.04
LSM4-206ENST00000600289 A0A1B0GW54 56 aa8.56□□□□□ -1.04
LSM4-206ENST00000600289 IGKV4-1P06312 121 aa8.56□□□□□ -1.04
LSM4-206ENST00000600289 VPS25Q9BRG1 176 aa8.56□□□□□ -1.04
LSM4-206ENST00000600289 A0A1W2PPM0 123 aa8.55□□□□□ -1.04
LSM4-206ENST00000600289 A8MUU9 505 aa8.55□□□□□ -1.04
LSM4-206ENST00000600289 PDE6GP18545 87 aa8.55□□□□□ -1.04
LSM4-206ENST00000600289 Q6ZQT0 140 aa8.55□□□□□ -1.04
LSM4-206ENST00000600289 KRTAP19-2Q3LHN2 52 aa8.54□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms