RNA–Protein interactions for RNA: ENST00000600284.5

VRK3-221, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 768 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-221ENST00000600284 BVES-AS1Q5T3Y7 98 aa8.51□□□□□ -1.05
VRK3-221ENST00000600284 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP8.5□□□□□ -1.05
VRK3-221ENST00000600284 PPDPFLQ8WWR9 84 aa8.5□□□□□ -1.05
VRK3-221ENST00000600284 HIST1H4GQ99525 98 aa8.5□□□□□ -1.05
VRK3-221ENST00000600284 SCGB1D1O95968 90 aa8.49□□□□□ -1.05
VRK3-221ENST00000600284 COX8AP10176 69 aa8.49□□□□□ -1.05
VRK3-221ENST00000600284 KRTAP19-2Q3LHN2 52 aa8.49□□□□□ -1.05
VRK3-221ENST00000600284 OCIAD2Q56VL3 154 aa8.49□□□□□ -1.05
VRK3-221ENST00000600284 CLEC2BQ92478 149 aa8.49□□□□□ -1.05
VRK3-221ENST00000600284 DLEU1O43261 78 aa8.48□□□□□ -1.05
VRK3-221ENST00000600284 RPL37P61927 97 aaKnown RBP8.48□□□□□ -1.05
VRK3-221ENST00000600284 TMA7Q9Y2S6 64 aaKnown RBP8.47□□□□□ -1.05
VRK3-221ENST00000600284 TRBV7-7A0A0K0K1E9 115 aa8.46□□□□□ -1.06
VRK3-221ENST00000600284 IGFL1Q6UW32 110 aa8.46□□□□□ -1.06
VRK3-221ENST00000600284 KRTAP9-6A0A140TA67 174 aa8.45□□□□□ -1.06
VRK3-221ENST00000600284 LCE2DQ5TA82 110 aaPredicted RBP8.45□□□□□ -1.06
VRK3-221ENST00000600284 C12orf57Q99622 126 aa8.45□□□□□ -1.06
VRK3-221ENST00000600284 SNHG12Q9BXW3 62 aa8.44□□□□□ -1.06
VRK3-221ENST00000600284 SNCGO76070 127 aa8.42□□□□□ -1.06
VRK3-221ENST00000600284 MT1HP80294 61 aa8.42□□□□□ -1.06
VRK3-221ENST00000600284 CFC1BP0CG36 223 aa8.41□□□□□ -1.06
VRK3-221ENST00000600284 CFC1P0CG37 223 aa8.41□□□□□ -1.06
VRK3-221ENST00000600284 HIGD1BQ9P298 99 aa8.41□□□□□ -1.06
VRK3-221ENST00000600284 H0YGX0 51 aa8.4□□□□□ -1.06
VRK3-221ENST00000600284 RAB37Q96AX2 223 aa8.4□□□□□ -1.06
VRK3-221ENST00000600284 A0A0B4J2C4 111 aa8.38□□□□□ -1.07
VRK3-221ENST00000600284 C14orf144Q96I85 54 aa8.38□□□□□ -1.07
VRK3-221ENST00000600284 Q6Q795 121 aa8.37□□□□□ -1.07
VRK3-221ENST00000600284 LST1O00453 97 aa8.36□□□□□ -1.07
VRK3-221ENST00000600284 SPATA45Q537H7 98 aa8.36□□□□□ -1.07
VRK3-221ENST00000600284 H3BUT2 72 aa8.35□□□□□ -1.07
VRK3-221ENST00000600284 GHRHP01286 108 aa8.35□□□□□ -1.07
VRK3-221ENST00000600284 SS18L2Q9UHA2 77 aa8.35□□□□□ -1.07
VRK3-221ENST00000600284 PAM16Q9Y3D7 125 aa8.35□□□□□ -1.07
VRK3-221ENST00000600284 LOC105371267A0A1B0GV96 52 aa8.33□□□□□ -1.08
VRK3-221ENST00000600284 A0A1B0GX51 115 aa8.33□□□□□ -1.08
VRK3-221ENST00000600284 NDUFV3P56181 108 aaKnown RBP8.33□□□□□ -1.08
VRK3-221ENST00000600284 C2orf91Q6ZV80 131 aa8.33□□□□□ -1.08
VRK3-221ENST00000600284 Q75L30 129 aa8.33□□□□□ -1.08
VRK3-221ENST00000600284 TEN1Q86WV5 123 aa8.33□□□□□ -1.08
VRK3-221ENST00000600284 OBSCN-AS1Q96MR7 158 aa8.33□□□□□ -1.08
VRK3-221ENST00000600284 VAMP8Q9BV40 100 aa8.33□□□□□ -1.08
VRK3-221ENST00000600284 ATP11AUNQ6ZP68 121 aa8.32□□□□□ -1.08
VRK3-221ENST00000600284 FAM218AQ96MZ4 157 aa8.32□□□□□ -1.08
VRK3-221ENST00000600284 TMEM238LA0A1B0GVL6 79 aa8.31□□□□□ -1.08
VRK3-221ENST00000600284 A6NJY4 79 aa8.31□□□□□ -1.08
VRK3-221ENST00000600284 COX6B2Q6YFQ2 88 aa8.31□□□□□ -1.08
VRK3-221ENST00000600284 CEND1Q8N111 149 aa8.31□□□□□ -1.08
VRK3-221ENST00000600284 PRO1854Q9UHT4 67 aa8.3□□□□□ -1.08
VRK3-221ENST00000600284 LORP23490 312 aaPredicted RBP8.29□□□□□ -1.08
VRK3-221ENST00000600284 KRTAP10-6P60371 365 aaPredicted RBP8.28□□□□□ -1.08
VRK3-221ENST00000600284 FSIP2Q5CZC0 6907 aa8.27□□□□□ -1.08
VRK3-221ENST00000600284 H3BMG7 143 aa8.27□□□□□ -1.09
VRK3-221ENST00000600284 M0R2T5 61 aa8.27□□□□□ -1.09
VRK3-221ENST00000600284 Q96NJ1 140 aa8.26□□□□□ -1.09
VRK3-221ENST00000600284 A0A087WSZ3 146 aa8.25□□□□□ -1.09
VRK3-221ENST00000600284 FABP2P12104 132 aa8.25□□□□□ -1.09
VRK3-221ENST00000600284 FLGP20930 4061 aaPredicted RBP8.25□□□□□ -1.09
VRK3-221ENST00000600284 FXYD2P54710 66 aa8.24□□□□□ -1.09
VRK3-221ENST00000600284 C20orf166-AS1Q96NR2 134 aa8.24□□□□□ -1.09
VRK3-221ENST00000600284 CRCT1Q9UGL9 99 aa8.24□□□□□ -1.09
VRK3-221ENST00000600284 H3BQ85 93 aa8.23□□□□□ -1.09
VRK3-221ENST00000600284 TRIAP1O43715 76 aa8.22□□□□□ -1.09
VRK3-221ENST00000600284 A8MUU9 505 aa8.21□□□□□ -1.1
VRK3-221ENST00000600284 A0A1W2PNM2 257 aa8.19□□□□□ -1.1
VRK3-221ENST00000600284 DNAL4O96015 105 aa8.18□□□□□ -1.1
VRK3-221ENST00000600284 HSD52Q0P140 79 aa8.18□□□□□ -1.1
VRK3-221ENST00000600284 ORMDL1Q9P0S3 153 aa8.18□□□□□ -1.1
VRK3-221ENST00000600284 TRBV7-4A0A0J9YYF1 115 aa8.17□□□□□ -1.1
VRK3-221ENST00000600284 ANKRD29Q8N6D5 301 aa8.17□□□□□ -1.1
VRK3-221ENST00000600284 TMEM256-PLSCR3K7ERE1 68 aa8.16□□□□□ -1.1
VRK3-221ENST00000600284 COX6CP09669 75 aa8.16□□□□□ -1.1
VRK3-221ENST00000600284 PSMB2P49721 201 aa8.15□□□□□ -1.1
VRK3-221ENST00000600284 PYY3Q5JQD4 70 aa8.15□□□□□ -1.1
VRK3-221ENST00000600284 SIGMAR1Q99720 223 aa8.13□□□□□ -1.11
VRK3-221ENST00000600284 DSCR10P59022 87 aa8.12□□□□□ -1.11
VRK3-221ENST00000600284 LINC00313P59037 77 aa8.12□□□□□ -1.11
VRK3-221ENST00000600284 TRBV20-1A0A075B6N2 111 aa8.11□□□□□ -1.11
VRK3-221ENST00000600284 K7ERJ3 54 aa8.11□□□□□ -1.11
VRK3-221ENST00000600284 IGKV4-1P06312 121 aa8.11□□□□□ -1.11
VRK3-221ENST00000600284 UBE2V1Q13404 147 aa8.1□□□□□ -1.11
VRK3-221ENST00000600284 SMIM6P0DI80 62 aa8.09□□□□□ -1.11
VRK3-221ENST00000600284 UQCR10Q9UDW1 63 aa8.09□□□□□ -1.11
VRK3-221ENST00000600284 CCKP06307 115 aa8.08□□□□□ -1.12
VRK3-221ENST00000600284 LINC00472Q9H8W2 130 aa8.08□□□□□ -1.12
VRK3-221ENST00000600284 TRACP01848 142 aa8.07□□□□□ -1.12
VRK3-221ENST00000600284 A0A1B0GV72 72 aa8.06□□□□□ -1.12
VRK3-221ENST00000600284 KRTAP16-1A8MUX0 517 aa8.06□□□□□ -1.12
VRK3-221ENST00000600284 SCGB1C2P0DMR2 95 aa8.03□□□□□ -1.12
VRK3-221ENST00000600284 RBM3P98179 157 aaKnown RBP8.02□□□□□ -1.13
VRK3-221ENST00000600284 DEFB116Q30KQ4 102 aa8.02□□□□□ -1.13
VRK3-221ENST00000600284 C21orf62-AS1Q17RA5 79 aa8.01□□□□□ -1.13
VRK3-221ENST00000600284 NOTCH2NLQ7Z3S9 236 aa8.01□□□□□ -1.13
VRK3-221ENST00000600284 DSCR8Q96T75 97 aa8.01□□□□□ -1.13
VRK3-221ENST00000600284 IGHV6-1A0A0B4J1U7 121 aa8□□□□□ -1.13
VRK3-221ENST00000600284 C8orf87E5RJ46 101 aa7.98□□□□□ -1.13
VRK3-221ENST00000600284 PCP4L1A6NKN8 68 aa7.97□□□□□ -1.13
VRK3-221ENST00000600284 VPS25Q9BRG1 176 aa7.97□□□□□ -1.13
VRK3-221ENST00000600284 A0A1B0GVX0 72 aa7.96□□□□□ -1.14
VRK3-221ENST00000600284 BAALC-AS2P0C853 105 aa7.96□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 49.5 ms