RNA–Protein interactions for RNA: ENST00000597776.1

LSM4-205, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, human

TSL 2

Gene LSM4, Length 446 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LSM4-205	ENST00000597776		F8WEM9	126 aa		5.54	□□□□□ -1.52
LSM4-205	ENST00000597776	S100A1	P23297	94 aa		5.52	□□□□□ -1.53
LSM4-205	ENST00000597776	LINC00575	Q6W349	94 aa		5.52	□□□□□ -1.53
LSM4-205	ENST00000597776		Q6ZQY7	126 aa		5.52	□□□□□ -1.53
LSM4-205	ENST00000597776	IGFL1	Q6UW32	110 aa		5.51	□□□□□ -1.53
LSM4-205	ENST00000597776	OBSCN-AS1	Q96MR7	158 aa		5.51	□□□□□ -1.53
LSM4-205	ENST00000597776	TRBV7-7	A0A0K0K1E9	115 aa		5.5	□□□□□ -1.53
LSM4-205	ENST00000597776	SNRPE	P62304	92 aa	Known RBP	5.5	□□□□□ -1.53
LSM4-205	ENST00000597776	VAMP3	Q15836	100 aa		5.5	□□□□□ -1.53
LSM4-205	ENST00000597776	CLEC2B	Q92478	149 aa		5.5	□□□□□ -1.53
LSM4-205	ENST00000597776	hADV29S1	A0JD25	119 aa		5.49	□□□□□ -1.53
LSM4-205	ENST00000597776		Q6JHZ5	121 aa		5.49	□□□□□ -1.53
LSM4-205	ENST00000597776		Q6Q795	121 aa		5.49	□□□□□ -1.53
LSM4-205	ENST00000597776	HIST3H2BB	Q8N257	126 aa		5.49	□□□□□ -1.53
LSM4-205	ENST00000597776	S100A2	P29034	98 aa		5.48	□□□□□ -1.53
LSM4-205	ENST00000597776	HIST1H2BL	Q99880	126 aa		5.48	□□□□□ -1.53
LSM4-205	ENST00000597776	OCIAD2	Q56VL3	154 aa		5.47	□□□□□ -1.53
LSM4-205	ENST00000597776		Q75L30	129 aa		5.47	□□□□□ -1.53
LSM4-205	ENST00000597776		H3BUT2	72 aa		5.46	□□□□□ -1.54
LSM4-205	ENST00000597776	S100A6	P06703	90 aa		5.46	□□□□□ -1.54
LSM4-205	ENST00000597776	ATP11AUN	Q6ZP68	121 aa		5.46	□□□□□ -1.54
LSM4-205	ENST00000597776	C12orf57	Q99622	126 aa		5.46	□□□□□ -1.54
LSM4-205	ENST00000597776	HSBP1L1	C9JCN9	74 aa		5.44	□□□□□ -1.54
LSM4-205	ENST00000597776	UNQ6493/PRO21345	Q6UXR8	122 aa	Predicted RBP	5.44	□□□□□ -1.54
LSM4-205	ENST00000597776	LST1	O00453	97 aa		5.43	□□□□□ -1.54
LSM4-205	ENST00000597776		Q96NJ1	140 aa		5.43	□□□□□ -1.54
LSM4-205	ENST00000597776	SNHG12	Q9BXW3	62 aa		5.43	□□□□□ -1.54
LSM4-205	ENST00000597776	BVES-AS1	Q5T3Y7	98 aa		5.41	□□□□□ -1.54
LSM4-205	ENST00000597776	PPDPFL	Q8WWR9	84 aa		5.41	□□□□□ -1.54
LSM4-205	ENST00000597776	HIST1H4G	Q99525	98 aa		5.4	□□□□□ -1.54
LSM4-205	ENST00000597776	C20orf166-AS1	Q96NR2	134 aa		5.39	□□□□□ -1.55
LSM4-205	ENST00000597776	SCGB1D1	O95968	90 aa		5.38	□□□□□ -1.55
LSM4-205	ENST00000597776	KRTAP9-8	Q9BYQ0	159 aa		5.38	□□□□□ -1.55
LSM4-205	ENST00000597776		A8MUU9	505 aa		5.37	□□□□□ -1.55
LSM4-205	ENST00000597776	SS18L2	Q9UHA2	77 aa		5.37	□□□□□ -1.55
LSM4-205	ENST00000597776		A0A087WSZ3	146 aa		5.36	□□□□□ -1.55
LSM4-205	ENST00000597776	DLEU1	O43261	78 aa		5.36	□□□□□ -1.55
LSM4-205	ENST00000597776	COX8A	P10176	69 aa		5.36	□□□□□ -1.55
LSM4-205	ENST00000597776	FAM218A	Q96MZ4	157 aa		5.36	□□□□□ -1.55
LSM4-205	ENST00000597776	CFC1	P0CG37	223 aa		5.35	□□□□□ -1.55
LSM4-205	ENST00000597776	NDUFV3	P56181	108 aa	Known RBP	5.35	□□□□□ -1.55
LSM4-205	ENST00000597776	DSCR10	P59022	87 aa		5.35	□□□□□ -1.55
LSM4-205	ENST00000597776	TEN1	Q86WV5	123 aa		5.35	□□□□□ -1.55
LSM4-205	ENST00000597776	USH2A	O75445	5202 aa		5.34	□□□□□ -1.55
LSM4-205	ENST00000597776	TRBV20-1	A0A075B6N2	111 aa		5.34	□□□□□ -1.55
LSM4-205	ENST00000597776	SSPO	A2VEC9	5147 aa		5.33	□□□□□ -1.56
LSM4-205	ENST00000597776	KRTAP9-1	A8MXZ3	250 aa	Predicted RBP	5.33	□□□□□ -1.56
LSM4-205	ENST00000597776	RAB37	Q96AX2	223 aa		5.33	□□□□□ -1.56
LSM4-205	ENST00000597776		H3BMG7	143 aa		5.32	□□□□□ -1.56
LSM4-205	ENST00000597776	SIGMAR1	Q99720	223 aa		5.32	□□□□□ -1.56
LSM4-205	ENST00000597776	KRTAP9-7	A8MTY7	169 aa		5.31	□□□□□ -1.56
LSM4-205	ENST00000597776	KRTAP16-1	A8MUX0	517 aa		5.31	□□□□□ -1.56
LSM4-205	ENST00000597776		H0YGX0	51 aa		5.31	□□□□□ -1.56
LSM4-205	ENST00000597776	SNCG	O76070	127 aa		5.31	□□□□□ -1.56
LSM4-205	ENST00000597776	C14orf144	Q96I85	54 aa		5.31	□□□□□ -1.56
LSM4-205	ENST00000597776	HIGD1B	Q9P298	99 aa		5.31	□□□□□ -1.56
LSM4-205	ENST00000597776		A0A0B4J2C4	111 aa		5.3	□□□□□ -1.56
LSM4-205	ENST00000597776		A0A1W2PNM2	257 aa		5.3	□□□□□ -1.56
LSM4-205	ENST00000597776	FABP2	P12104	132 aa		5.3	□□□□□ -1.56
LSM4-205	ENST00000597776	SPATA45	Q537H7	98 aa		5.3	□□□□□ -1.56
LSM4-205	ENST00000597776	VAMP8	Q9BV40	100 aa		5.3	□□□□□ -1.56
LSM4-205	ENST00000597776	PAM16	Q9Y3D7	125 aa		5.3	□□□□□ -1.56
LSM4-205	ENST00000597776	MT2A	P02795	61 aa		5.29	□□□□□ -1.56
LSM4-205	ENST00000597776	FAM236D	A0A1B0GTK5	79 aa		5.28	□□□□□ -1.56
LSM4-205	ENST00000597776		A0A1B0GV72	72 aa		5.28	□□□□□ -1.56
LSM4-205	ENST00000597776	FAM236C	P0DP71	79 aa		5.28	□□□□□ -1.56
LSM4-205	ENST00000597776	C2orf91	Q6ZV80	131 aa		5.28	□□□□□ -1.56
LSM4-205	ENST00000597776	IGKV4-1	P06312	121 aa		5.27	□□□□□ -1.57
LSM4-205	ENST00000597776	LINC00313	P59037	77 aa		5.27	□□□□□ -1.57
LSM4-205	ENST00000597776	NOTCH2NL	Q7Z3S9	236 aa		5.27	□□□□□ -1.57
LSM4-205	ENST00000597776	MT1F	P04733	61 aa		5.26	□□□□□ -1.57
LSM4-205	ENST00000597776	TMEM238L	A0A1B0GVL6	79 aa		5.25	□□□□□ -1.57
LSM4-205	ENST00000597776		A0A1B0GX51	115 aa		5.25	□□□□□ -1.57
LSM4-205	ENST00000597776		A6NJY4	79 aa		5.25	□□□□□ -1.57
LSM4-205	ENST00000597776	TRIAP1	O43715	76 aa		5.25	□□□□□ -1.57
LSM4-205	ENST00000597776	HRES1	P13985	223 aa		5.25	□□□□□ -1.57
LSM4-205	ENST00000597776	DEFB116	Q30KQ4	102 aa		5.25	□□□□□ -1.57
LSM4-205	ENST00000597776	CEND1	Q8N111	149 aa		5.25	□□□□□ -1.57
LSM4-205	ENST00000597776	PRO1854	Q9UHT4	67 aa		5.25	□□□□□ -1.57
LSM4-205	ENST00000597776	FCGBP	Q9Y6R7	5405 aa	Predicted RBP	5.24	□□□□□ -1.57
LSM4-205	ENST00000597776	LCE2B	O14633	110 aa		5.24	□□□□□ -1.57
LSM4-205	ENST00000597776	GHRH	P01286	108 aa		5.24	□□□□□ -1.57
LSM4-205	ENST00000597776	FXYD2	P54710	66 aa		5.24	□□□□□ -1.57
LSM4-205	ENST00000597776	MPLKIP	Q8TAP9	179 aa		5.24	□□□□□ -1.57
LSM4-205	ENST00000597776	TRBV7-4	A0A0J9YYF1	115 aa		5.23	□□□□□ -1.57
LSM4-205	ENST00000597776	ANKRD29	Q8N6D5	301 aa		5.23	□□□□□ -1.57
LSM4-205	ENST00000597776	RBM12B-AS1	Q9P1G2	102 aa		5.23	□□□□□ -1.57
LSM4-205	ENST00000597776	IGHV6-1	A0A0B4J1U7	121 aa		5.22	□□□□□ -1.57
LSM4-205	ENST00000597776	KRTAP10-10	P60014	251 aa		5.22	□□□□□ -1.57
LSM4-205	ENST00000597776	KRTAP19-1	Q8IUB9	90 aa		5.22	□□□□□ -1.57
LSM4-205	ENST00000597776	PYY3	Q5JQD4	70 aa		5.21	□□□□□ -1.58
LSM4-205	ENST00000597776	KRTAP9-3	Q9BYQ3	159 aa		5.21	□□□□□ -1.58
LSM4-205	ENST00000597776	LINC00472	Q9H8W2	130 aa		5.21	□□□□□ -1.58
LSM4-205	ENST00000597776	DNAL4	O96015	105 aa		5.2	□□□□□ -1.58
LSM4-205	ENST00000597776	ORMDL1	Q9P0S3	153 aa		5.2	□□□□□ -1.58
LSM4-205	ENST00000597776		K7ERJ3	54 aa		5.19	□□□□□ -1.58
LSM4-205	ENST00000597776	TRAC	P01848	142 aa		5.19	□□□□□ -1.58
LSM4-205	ENST00000597776	CCK	P06307	115 aa		5.19	□□□□□ -1.58
LSM4-205	ENST00000597776	HSD52	Q0P140	79 aa		5.19	□□□□□ -1.58
LSM4-205	ENST00000597776	PSMB2	P49721	201 aa		5.18	□□□□□ -1.58

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