RNA–Protein interactions for RNA: ENST00000597172.5

TRIM28-208, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 577 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-208ENST00000597172 Q6ZQY7 126 aa5.65□□□□□ -1.5
TRIM28-208ENST00000597172 SPCS1Q9Y6A9 102 aa5.65□□□□□ -1.5
TRIM28-208ENST00000597172 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP5.64□□□□□ -1.51
TRIM28-208ENST00000597172 A0A1B0GV90 55 aa5.63□□□□□ -1.51
TRIM28-208ENST00000597172 H3BMG7 143 aa5.63□□□□□ -1.51
TRIM28-208ENST00000597172 K7EP34 96 aa5.63□□□□□ -1.51
TRIM28-208ENST00000597172 SNCGO76070 127 aa5.63□□□□□ -1.51
TRIM28-208ENST00000597172 SPRR4Q96PI1 79 aa5.63□□□□□ -1.51
TRIM28-208ENST00000597172 IGLV5-48A0A075B6I7 105 aa5.62□□□□□ -1.51
TRIM28-208ENST00000597172 KRTAP9-7A8MTY7 169 aa5.62□□□□□ -1.51
TRIM28-208ENST00000597172 KRTAP1-4P0C5Y4 121 aa5.62□□□□□ -1.51
TRIM28-208ENST00000597172 GAGE2AQ6NT46 116 aa5.62□□□□□ -1.51
TRIM28-208ENST00000597172 Q8N377 158 aa5.62□□□□□ -1.51
TRIM28-208ENST00000597172 DEFB105AQ8NG35 78 aa5.62□□□□□ -1.51
TRIM28-208ENST00000597172 ANAPC11Q9NYG5 84 aa5.62□□□□□ -1.51
TRIM28-208ENST00000597172 SPRR1BP22528 89 aa5.61□□□□□ -1.51
TRIM28-208ENST00000597172 LINC00483Q53H64 154 aa5.61□□□□□ -1.51
TRIM28-208ENST00000597172 SMIM29Q86T20 159 aa5.61□□□□□ -1.51
TRIM28-208ENST00000597172 TEX49A0A1B0GTD5 131 aa5.6□□□□□ -1.51
TRIM28-208ENST00000597172 DNAL4O96015 105 aa5.6□□□□□ -1.51
TRIM28-208ENST00000597172 BAALC-AS2P0C853 105 aa5.6□□□□□ -1.51
TRIM28-208ENST00000597172 OCIAD2Q56VL3 154 aa5.6□□□□□ -1.51
TRIM28-208ENST00000597172 ORMDL1Q9P0S3 153 aa5.6□□□□□ -1.51
TRIM28-208ENST00000597172 ZNF706Q9Y5V0 76 aaPredicted RBP5.6□□□□□ -1.51
TRIM28-208ENST00000597172 C9JAW5 83 aa5.59□□□□□ -1.51
TRIM28-208ENST00000597172 LINC01600Q96MT4 127 aa5.59□□□□□ -1.51
TRIM28-208ENST00000597172 PRO0461Q9UI25 63 aa5.59□□□□□ -1.51
TRIM28-208ENST00000597172 GTF2H5Q6ZYL4 71 aa5.58□□□□□ -1.52
TRIM28-208ENST00000597172 MTURNQ8N3F0 131 aa5.58□□□□□ -1.52
TRIM28-208ENST00000597172 C3orf22Q8N5N4 141 aa5.58□□□□□ -1.52
TRIM28-208ENST00000597172 A0A087X002 238 aa5.57□□□□□ -1.52
TRIM28-208ENST00000597172 TMEM256-PLSCR3K7ERE1 68 aa5.57□□□□□ -1.52
TRIM28-208ENST00000597172 SMCPP49901 116 aaPredicted RBP5.57□□□□□ -1.52
TRIM28-208ENST00000597172 PPDPFLQ8WWR9 84 aa5.57□□□□□ -1.52
TRIM28-208ENST00000597172 UBE2V1Q13404 147 aa5.56□□□□□ -1.52
TRIM28-208ENST00000597172 FAM229BQ4G0N7 80 aa5.56□□□□□ -1.52
TRIM28-208ENST00000597172 KRTAP13-2Q52LG2 175 aa5.56□□□□□ -1.52
TRIM28-208ENST00000597172 H3BQ85 93 aa5.55□□□□□ -1.52
TRIM28-208ENST00000597172 GHRHP01286 108 aa5.55□□□□□ -1.52
TRIM28-208ENST00000597172 NDUFV3P56181 108 aaKnown RBP5.55□□□□□ -1.52
TRIM28-208ENST00000597172 KRTAP10-8P60410 259 aa5.55□□□□□ -1.52
TRIM28-208ENST00000597172 H3BT86 120 aa5.54□□□□□ -1.52
TRIM28-208ENST00000597172 ANKRD29Q8N6D5 301 aa5.54□□□□□ -1.52
TRIM28-208ENST00000597172 PRR26Q8N8Z3 221 aa5.54□□□□□ -1.52
TRIM28-208ENST00000597172 LAMTOR3Q9UHA4 124 aa5.54□□□□□ -1.52
TRIM28-208ENST00000597172 IGLV9-49A0A0B4J1Y8 123 aa5.53□□□□□ -1.52
TRIM28-208ENST00000597172 CRYGAP11844 174 aa5.53□□□□□ -1.52
TRIM28-208ENST00000597172 IGLV8-61A0A075B6I0 122 aa5.52□□□□□ -1.53
TRIM28-208ENST00000597172 F8W1H4 67 aa5.52□□□□□ -1.53
TRIM28-208ENST00000597172 A0A0G2JQZ4 141 aa5.51□□□□□ -1.53
TRIM28-208ENST00000597172 OBSCN-AS1Q96MR7 158 aa5.51□□□□□ -1.53
TRIM28-208ENST00000597172 A0A1B0GV72 72 aa5.5□□□□□ -1.53
TRIM28-208ENST00000597172 MOBPQ13875 183 aa5.5□□□□□ -1.53
TRIM28-208ENST00000597172 C9orf153Q5TBE3 101 aa5.49□□□□□ -1.53
TRIM28-208ENST00000597172 SSBP3-AS1Q7Z2R9 100 aa5.49□□□□□ -1.53
TRIM28-208ENST00000597172 TYMSOSQ8TAI1 123 aa5.49□□□□□ -1.53
TRIM28-208ENST00000597172 F8WEM9 126 aa5.48□□□□□ -1.53
TRIM28-208ENST00000597172 RBM3P98179 157 aaKnown RBP5.48□□□□□ -1.53
TRIM28-208ENST00000597172 IGFL1Q6UW32 110 aa5.48□□□□□ -1.53
TRIM28-208ENST00000597172 Q8NBF4 154 aa5.48□□□□□ -1.53
TRIM28-208ENST00000597172 TRBV7-4A0A0J9YYF1 115 aa5.47□□□□□ -1.53
TRIM28-208ENST00000597172 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.47□□□□□ -1.53
TRIM28-208ENST00000597172 JMJD7-PLA2G4BH0Y9G9 81 aa5.47□□□□□ -1.53
TRIM28-208ENST00000597172 ETDBQ3ZM63 59 aa5.47□□□□□ -1.53
TRIM28-208ENST00000597172 Q6JHZ5 121 aa5.47□□□□□ -1.53
TRIM28-208ENST00000597172 TEN1Q86WV5 123 aa5.46□□□□□ -1.54
TRIM28-208ENST00000597172 A0A1W2PNM2 257 aa5.45□□□□□ -1.54
TRIM28-208ENST00000597172 C14orf132Q9NPU4 83 aa5.45□□□□□ -1.54
TRIM28-208ENST00000597172 LOC110117498A0A087WWA1 95 aa5.44□□□□□ -1.54
TRIM28-208ENST00000597172 Q6ZQT0 140 aa5.44□□□□□ -1.54
TRIM28-208ENST00000597172 DSCR8Q96T75 97 aa5.44□□□□□ -1.54
TRIM28-208ENST00000597172 HRCT1Q6UXD1 115 aa5.43□□□□□ -1.54
TRIM28-208ENST00000597172 LINC00304Q8N9R0 145 aa5.42□□□□□ -1.54
TRIM28-208ENST00000597172 CCKP06307 115 aa5.41□□□□□ -1.54
TRIM28-208ENST00000597172 PDE6GP18545 87 aa5.41□□□□□ -1.54
TRIM28-208ENST00000597172 CD164Q04900 197 aa5.41□□□□□ -1.54
TRIM28-208ENST00000597172 Q6Q795 121 aa5.41□□□□□ -1.54
TRIM28-208ENST00000597172 MUC17Q685J3 4493 aa5.4□□□□□ -1.54
TRIM28-208ENST00000597172 SPAG11AQ6PDA7 123 aa5.4□□□□□ -1.54
TRIM28-208ENST00000597172 TRBV7-7A0A0K0K1E9 115 aa5.39□□□□□ -1.55
TRIM28-208ENST00000597172 PRR4Q16378 134 aa5.39□□□□□ -1.55
TRIM28-208ENST00000597172 VPS25Q9BRG1 176 aa5.39□□□□□ -1.55
TRIM28-208ENST00000597172 SPINK1P00995 79 aa5.38□□□□□ -1.55
TRIM28-208ENST00000597172 C4orf48Q5BLP8 95 aa5.38□□□□□ -1.55
TRIM28-208ENST00000597172 A0A087WSZ3 146 aa5.36□□□□□ -1.55
TRIM28-208ENST00000597172 RPS29P62273 56 aaKnown RBP5.36□□□□□ -1.55
TRIM28-208ENST00000597172 Q5XG85 94 aa5.36□□□□□ -1.55
TRIM28-208ENST00000597172 A0A1B0GW54 56 aa5.35□□□□□ -1.55
TRIM28-208ENST00000597172 C21orf62-AS1Q17RA5 79 aa5.35□□□□□ -1.55
TRIM28-208ENST00000597172 ASB16-AS1Q495Z4 193 aa5.33□□□□□ -1.56
TRIM28-208ENST00000597172 C1orf195Q5TG92 126 aa5.32□□□□□ -1.56
TRIM28-208ENST00000597172 Q96NJ1 140 aa5.32□□□□□ -1.56
TRIM28-208ENST00000597172 LIMD2Q9BT23 127 aa5.32□□□□□ -1.56
TRIM28-208ENST00000597172 LINC00846Q9NV44 126 aa5.32□□□□□ -1.56
TRIM28-208ENST00000597172 LINC00472Q9H8W2 130 aa5.31□□□□□ -1.56
TRIM28-208ENST00000597172 RETNLBQ9BQ08 111 aa5.3□□□□□ -1.56
TRIM28-208ENST00000597172 SS18L2Q9UHA2 77 aa5.3□□□□□ -1.56
TRIM28-208ENST00000597172 FAM240AA0A1B0GVK7 77 aa5.29□□□□□ -1.56
TRIM28-208ENST00000597172 ACYP1P07311 99 aa5.29□□□□□ -1.56
TRIM28-208ENST00000597172 NREPQ16612 68 aa5.29□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 152 ms