RNA–Protein interactions for RNA: ENST00000594104.1

VRK3-208, Transcript of vaccinia related kinase 3, humanhuman

Gene VRK3, Length 2,197 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-208ENST00000594104 LRCOL1A6NCL2 159 aa7.33□□□□□ -1.24
VRK3-208ENST00000594104 C3orf84H3BNL1 204 aa7.33□□□□□ -1.24
VRK3-208ENST00000594104 HUWE1Q7Z6Z7 4374 aaKnown RBP7.33□□□□□ -1.24
VRK3-208ENST00000594104 NDUFC1O43677 76 aa7.32□□□□□ -1.24
VRK3-208ENST00000594104 C20orf197Q8N268 126 aa7.32□□□□□ -1.24
VRK3-208ENST00000594104 CYSTM1Q9H1C7 97 aa7.32□□□□□ -1.24
VRK3-208ENST00000594104 SPRR1BP22528 89 aa7.32□□□□□ -1.24
VRK3-208ENST00000594104 DPH3Q96FX2 82 aa7.3□□□□□ -1.24
VRK3-208ENST00000594104 Q6ZRN7 208 aaPredicted RBP7.29□□□□□ -1.24
VRK3-208ENST00000594104 ANK2Q01484 3957 aa7.29□□□□□ -1.24
VRK3-208ENST00000594104 DNAH1Q9P2D7 4330 aa7.29□□□□□ -1.24
VRK3-208ENST00000594104 IGLV2-33A0A075B6J2 118 aaPredicted RBP7.29□□□□□ -1.24
VRK3-208ENST00000594104 EPM2AB3EWF7 344 aa7.28□□□□□ -1.24
VRK3-208ENST00000594104 MGAM2Q2M2H8 2515 aa7.28□□□□□ -1.24
VRK3-208ENST00000594104 IGFL1Q6UW32 110 aa7.27□□□□□ -1.25
VRK3-208ENST00000594104 OCR1Q9BZK8 76 aa7.27□□□□□ -1.25
VRK3-208ENST00000594104 H7BZZ5 65 aa7.26□□□□□ -1.25
VRK3-208ENST00000594104 UBE2AP49459 152 aa7.26□□□□□ -1.25
VRK3-208ENST00000594104 PRLHP81277 87 aa7.26□□□□□ -1.25
VRK3-208ENST00000594104 HIGD2AQ9BW72 106 aa7.26□□□□□ -1.25
VRK3-208ENST00000594104 PHF5AQ7RTV0 110 aaKnown RBP7.26□□□□□ -1.25
VRK3-208ENST00000594104 Q8N9L7 120 aa7.25□□□□□ -1.25
VRK3-208ENST00000594104 ATP5EP56381 51 aaPredicted RBP7.25□□□□□ -1.25
VRK3-208ENST00000594104 FAM236DA0A1B0GTK5 79 aa7.24□□□□□ -1.25
VRK3-208ENST00000594104 CHTF8P0CG12 524 aa7.24□□□□□ -1.25
VRK3-208ENST00000594104 FAM236CP0DP71 79 aa7.24□□□□□ -1.25
VRK3-208ENST00000594104 MPLKIPQ8TAP9 179 aa7.24□□□□□ -1.25
VRK3-208ENST00000594104 DSCR10P59022 87 aa7.23□□□□□ -1.25
VRK3-208ENST00000594104 TMEM254Q8TBM7 123 aa7.23□□□□□ -1.25
VRK3-208ENST00000594104 STAB2Q8WWQ8 2551 aa7.22□□□□□ -1.25
VRK3-208ENST00000594104 KRTAP13-1Q8IUC0 172 aa7.22□□□□□ -1.25
VRK3-208ENST00000594104 KRTAP11-1Q8IUC1 163 aa7.21□□□□□ -1.26
VRK3-208ENST00000594104 SPACA4Q8TDM5 124 aa7.21□□□□□ -1.26
VRK3-208ENST00000594104 SERP1Q9Y6X1 66 aa7.21□□□□□ -1.26
VRK3-208ENST00000594104 LCE6AA0A183 80 aa7.2□□□□□ -1.26
VRK3-208ENST00000594104 A0A0U1RQV1 116 aa7.2□□□□□ -1.26
VRK3-208ENST00000594104 SNURFQ9Y675 71 aa7.2□□□□□ -1.26
VRK3-208ENST00000594104 A0A087WTM6 91 aa7.19□□□□□ -1.26
VRK3-208ENST00000594104 DYNC2H1Q8NCM8 4307 aaKnown RBP7.19□□□□□ -1.26
VRK3-208ENST00000594104 RPL37AP61513 92 aaKnown RBP7.19□□□□□ -1.26
VRK3-208ENST00000594104 DNAH9Q9NYC9 4486 aa7.18□□□□□ -1.26
VRK3-208ENST00000594104 A0A087WSZ3 146 aa7.18□□□□□ -1.26
VRK3-208ENST00000594104 HCG22E2RYF7 251 aa7.18□□□□□ -1.26
VRK3-208ENST00000594104 Q6ZR54 194 aa7.18□□□□□ -1.26
VRK3-208ENST00000594104 K7EQZ3 153 aa7.17□□□□□ -1.26
VRK3-208ENST00000594104 CD164Q04900 197 aa7.16□□□□□ -1.26
VRK3-208ENST00000594104 ZNF706Q9Y5V0 76 aaPredicted RBP7.16□□□□□ -1.26
VRK3-208ENST00000594104 PANO1I0J062 215 aa7.15□□□□□ -1.27
VRK3-208ENST00000594104 LINC00483Q53H64 154 aa7.15□□□□□ -1.27
VRK3-208ENST00000594104 PLAC8Q9NZF1 115 aa7.14□□□□□ -1.27
VRK3-208ENST00000594104 RTL8CO15255 209 aa7.13□□□□□ -1.27
VRK3-208ENST00000594104 LINC00472Q9H8W2 130 aa7.13□□□□□ -1.27
VRK3-208ENST00000594104 COL7A1Q02388 2944 aa7.12□□□□□ -1.27
VRK3-208ENST00000594104 A0A0G2JQZ4 141 aa7.12□□□□□ -1.27
VRK3-208ENST00000594104 A8MWP4 228 aa7.12□□□□□ -1.27
VRK3-208ENST00000594104 PRAC1Q96KF2 57 aa7.12□□□□□ -1.27
VRK3-208ENST00000594104 PRR15Q8IV56 129 aa7.11□□□□□ -1.27
VRK3-208ENST00000594104 ZCCHC13Q8WW36 166 aaKnown RBP7.1□□□□□ -1.27
VRK3-208ENST00000594104 KRTAP29-1A8MX34 341 aaPredicted RBP7.09□□□□□ -1.27
VRK3-208ENST00000594104 C1orf134Q5TEV5 83 aa7.09□□□□□ -1.27
VRK3-208ENST00000594104 SMIM26A0A096LP01 95 aa7.08□□□□□ -1.28
VRK3-208ENST00000594104 H3BPC8 53 aa7.08□□□□□ -1.28
VRK3-208ENST00000594104 C4orf26Q17RF5 130 aa7.08□□□□□ -1.28
VRK3-208ENST00000594104 ZNF861PO60384 105 aa7.07□□□□□ -1.28
VRK3-208ENST00000594104 NDUFB1O75438 58 aa7.06□□□□□ -1.28
VRK3-208ENST00000594104 DEFB116Q30KQ4 102 aa7.06□□□□□ -1.28
VRK3-208ENST00000594104 CASC2Q6XLA1 102 aa7.06□□□□□ -1.28
VRK3-208ENST00000594104 PSORS1C2Q9UIG4 136 aa7.06□□□□□ -1.28
VRK3-208ENST00000594104 MP68P56378 58 aa7.05□□□□□ -1.28
VRK3-208ENST00000594104 Q5XG85 94 aa7.03□□□□□ -1.28
VRK3-208ENST00000594104 WFDC13Q8IUB5 93 aa7.03□□□□□ -1.28
VRK3-208ENST00000594104 VPS13DQ5THJ4 4388 aa7.02□□□□□ -1.28
VRK3-208ENST00000594104 KRTAP3-1Q9BYR8 98 aa7.02□□□□□ -1.29
VRK3-208ENST00000594104 DNAH10Q8IVF4 4471 aa7□□□□□ -1.29
VRK3-208ENST00000594104 hDV103S1A0JD37 113 aa7□□□□□ -1.29
VRK3-208ENST00000594104 MOBPQ13875 183 aa6.99□□□□□ -1.29
VRK3-208ENST00000594104 Q96NJ1 140 aa6.99□□□□□ -1.29
VRK3-208ENST00000594104 CYP4F30PQ9H0H9 118 aa6.99□□□□□ -1.29
VRK3-208ENST00000594104 MMP24-AS1A0A0U1RRL7 71 aa6.99□□□□□ -1.29
VRK3-208ENST00000594104 IGLV7-43P04211 117 aa6.99□□□□□ -1.29
VRK3-208ENST00000594104 ASB16-AS1Q495Z4 193 aa6.99□□□□□ -1.29
VRK3-208ENST00000594104 TP53AIP1Q9HCN2 124 aa6.98□□□□□ -1.29
VRK3-208ENST00000594104 TENM2Q9NT68 2774 aa6.97□□□□□ -1.29
VRK3-208ENST00000594104 PLECQ15149 4684 aaKnown RBP6.97□□□□□ -1.29
VRK3-208ENST00000594104 LY6G6CO95867 125 aa6.97□□□□□ -1.29
VRK3-208ENST00000594104 TRAV22A0A0B4J277 110 aa6.96□□□□□ -1.29
VRK3-208ENST00000594104 H0Y9P7 68 aa6.96□□□□□ -1.3
VRK3-208ENST00000594104 SPANXA2-OT1Q8N9U9 137 aa6.96□□□□□ -1.3
VRK3-208ENST00000594104 SSBP3-AS1Q7Z2R9 100 aa6.95□□□□□ -1.3
VRK3-208ENST00000594104 LINC00208Q96KT6 92 aa6.95□□□□□ -1.3
VRK3-208ENST00000594104 FP248Q71RG6 208 aaPredicted RBP6.94□□□□□ -1.3
VRK3-208ENST00000594104 C8orf17Q9NRJ1 99 aa6.94□□□□□ -1.3
VRK3-208ENST00000594104 A0A1B0GVX0 72 aa6.93□□□□□ -1.3
VRK3-208ENST00000594104 KRTAP21-3Q3LHN1 58 aa6.93□□□□□ -1.3
VRK3-208ENST00000594104 CSMD3Q7Z407 3707 aa6.93□□□□□ -1.3
VRK3-208ENST00000594104 DNAH7Q8WXX0 4024 aa6.91□□□□□ -1.3
VRK3-208ENST00000594104 HRCT1Q6UXD1 115 aa6.91□□□□□ -1.3
VRK3-208ENST00000594104 C1orf64Q8NEQ6 169 aa6.91□□□□□ -1.3
VRK3-208ENST00000594104 Q6ZSA8 131 aa6.89□□□□□ -1.31
VRK3-208ENST00000594104 CIRBP-AS1Q8TBR5 109 aa6.89□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms