RNA–Protein interactions for RNA: ENST00000593564.2

LSM4-202, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 656 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-202ENST00000593564 ATOH7Q8N100 152 aa12.63□□□□□ -0.39
LSM4-202ENST00000593564 VAMP3Q15836 100 aa12.59□□□□□ -0.39
LSM4-202ENST00000593564 LINC00575Q6W349 94 aa12.57□□□□□ -0.4
LSM4-202ENST00000593564 Q6JHZ5 121 aa12.56□□□□□ -0.4
LSM4-202ENST00000593564 TRBV7-7A0A0K0K1E9 115 aa12.54□□□□□ -0.4
LSM4-202ENST00000593564 Q6ZQY7 126 aa12.54□□□□□ -0.4
LSM4-202ENST00000593564 CLEC2BQ92478 149 aa12.54□□□□□ -0.4
LSM4-202ENST00000593564 SNRPEP62304 92 aaKnown RBP12.53□□□□□ -0.4
LSM4-202ENST00000593564 hADV29S1A0JD25 119 aa12.52□□□□□ -0.41
LSM4-202ENST00000593564 IGFL1Q6UW32 110 aa12.52□□□□□ -0.41
LSM4-202ENST00000593564 Q75L30 129 aa12.49□□□□□ -0.41
LSM4-202ENST00000593564 OCIAD2Q56VL3 154 aa12.48□□□□□ -0.41
LSM4-202ENST00000593564 ATP11AUNQ6ZP68 121 aa12.47□□□□□ -0.41
LSM4-202ENST00000593564 OBSCN-AS1Q96MR7 158 aa12.47□□□□□ -0.41
LSM4-202ENST00000593564 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP12.44□□□□□ -0.42
LSM4-202ENST00000593564 Q6Q795 121 aa12.42□□□□□ -0.42
LSM4-202ENST00000593564 PPDPFLQ8WWR9 84 aa12.42□□□□□ -0.42
LSM4-202ENST00000593564 HSBP1L1C9JCN9 74 aa12.38□□□□□ -0.43
LSM4-202ENST00000593564 LST1O00453 97 aa12.38□□□□□ -0.43
LSM4-202ENST00000593564 BVES-AS1Q5T3Y7 98 aa12.37□□□□□ -0.43
LSM4-202ENST00000593564 SNHG12Q9BXW3 62 aa12.37□□□□□ -0.43
LSM4-202ENST00000593564 H3BUT2 72 aa12.35□□□□□ -0.43
LSM4-202ENST00000593564 SCGB1D1O95968 90 aa12.35□□□□□ -0.43
LSM4-202ENST00000593564 Q96NJ1 140 aa12.34□□□□□ -0.43
LSM4-202ENST00000593564 HIST1H2BLQ99880 126 aa12.33□□□□□ -0.44
LSM4-202ENST00000593564 HIST3H2BBQ8N257 126 aa12.32□□□□□ -0.44
LSM4-202ENST00000593564 C12orf57Q99622 126 aa12.32□□□□□ -0.44
LSM4-202ENST00000593564 C20orf166-AS1Q96NR2 134 aa12.3□□□□□ -0.44
LSM4-202ENST00000593564 SS18L2Q9UHA2 77 aa12.3□□□□□ -0.44
LSM4-202ENST00000593564 S100A2P29034 98 aa12.28□□□□□ -0.44
LSM4-202ENST00000593564 HIST1H4GQ99525 98 aa12.27□□□□□ -0.45
LSM4-202ENST00000593564 USH2AO75445 5202 aa12.27□□□□□ -0.45
LSM4-202ENST00000593564 A8MUU9 505 aa12.25□□□□□ -0.45
LSM4-202ENST00000593564 SSPOA2VEC9 5147 aa12.24□□□□□ -0.45
LSM4-202ENST00000593564 TEN1Q86WV5 123 aa12.24□□□□□ -0.45
LSM4-202ENST00000593564 CFC1P0CG37 223 aa12.23□□□□□ -0.45
LSM4-202ENST00000593564 KRTAP9-8Q9BYQ0 159 aa12.21□□□□□ -0.45
LSM4-202ENST00000593564 SNCGO76070 127 aa12.2□□□□□ -0.46
LSM4-202ENST00000593564 TRBV20-1A0A075B6N2 111 aa12.19□□□□□ -0.46
LSM4-202ENST00000593564 A0A087WSZ3 146 aa12.18□□□□□ -0.46
LSM4-202ENST00000593564 COX8AP10176 69 aa12.18□□□□□ -0.46
LSM4-202ENST00000593564 NDUFV3P56181 108 aaKnown RBP12.18□□□□□ -0.46
LSM4-202ENST00000593564 H0YGX0 51 aa12.17□□□□□ -0.46
LSM4-202ENST00000593564 RAB37Q96AX2 223 aa12.15□□□□□ -0.46
LSM4-202ENST00000593564 FAM218AQ96MZ4 157 aa12.15□□□□□ -0.46
LSM4-202ENST00000593564 DLEU1O43261 78 aa12.14□□□□□ -0.47
LSM4-202ENST00000593564 A0A0B4J2C4 111 aa12.11□□□□□ -0.47
LSM4-202ENST00000593564 H3BMG7 143 aa12.11□□□□□ -0.47
LSM4-202ENST00000593564 S100A6P06703 90 aa12.11□□□□□ -0.47
LSM4-202ENST00000593564 DSCR10P59022 87 aa12.11□□□□□ -0.47
LSM4-202ENST00000593564 KRTAP9-1A8MXZ3 250 aaPredicted RBP12.09□□□□□ -0.47
LSM4-202ENST00000593564 GHRHP01286 108 aa12.08□□□□□ -0.48
LSM4-202ENST00000593564 A0A1B0GX51 115 aa12.06□□□□□ -0.48
LSM4-202ENST00000593564 SIGMAR1Q99720 223 aa12.06□□□□□ -0.48
LSM4-202ENST00000593564 HIGD1BQ9P298 99 aa12.06□□□□□ -0.48
LSM4-202ENST00000593564 A0A1W2PNM2 257 aa12.04□□□□□ -0.48
LSM4-202ENST00000593564 KRTAP9-7A8MTY7 169 aa12.04□□□□□ -0.48
LSM4-202ENST00000593564 FABP2P12104 132 aa12.04□□□□□ -0.48
LSM4-202ENST00000593564 C14orf144Q96I85 54 aa12.03□□□□□ -0.48
LSM4-202ENST00000593564 KRTAP16-1A8MUX0 517 aa12.02□□□□□ -0.49
LSM4-202ENST00000593564 LINC00313P59037 77 aa12.01□□□□□ -0.49
LSM4-202ENST00000593564 MT2AP02795 61 aa12□□□□□ -0.49
LSM4-202ENST00000593564 FAM236DA0A1B0GTK5 79 aa11.99□□□□□ -0.49
LSM4-202ENST00000593564 FAM236CP0DP71 79 aa11.99□□□□□ -0.49
LSM4-202ENST00000593564 IGKV4-1P06312 121 aa11.97□□□□□ -0.49
LSM4-202ENST00000593564 C2orf91Q6ZV80 131 aa11.97□□□□□ -0.49
LSM4-202ENST00000593564 PRO1854Q9UHT4 67 aa11.97□□□□□ -0.49
LSM4-202ENST00000593564 FCGBPQ9Y6R7 5405 aaPredicted RBP11.95□□□□□ -0.5
LSM4-202ENST00000593564 TRBV7-4A0A0J9YYF1 115 aa11.95□□□□□ -0.5
LSM4-202ENST00000593564 SPATA45Q537H7 98 aa11.95□□□□□ -0.5
LSM4-202ENST00000593564 CEND1Q8N111 149 aa11.95□□□□□ -0.5
LSM4-202ENST00000593564 MPLKIPQ8TAP9 179 aa11.95□□□□□ -0.5
LSM4-202ENST00000593564 PAM16Q9Y3D7 125 aa11.95□□□□□ -0.5
LSM4-202ENST00000593564 TMEM238LA0A1B0GVL6 79 aa11.93□□□□□ -0.5
LSM4-202ENST00000593564 A6NJY4 79 aa11.93□□□□□ -0.5
LSM4-202ENST00000593564 ANKRD29Q8N6D5 301 aa11.93□□□□□ -0.5
LSM4-202ENST00000593564 RBM12B-AS1Q9P1G2 102 aa11.93□□□□□ -0.5
LSM4-202ENST00000593564 TRIAP1O43715 76 aa11.92□□□□□ -0.5
LSM4-202ENST00000593564 HRES1P13985 223 aa11.92□□□□□ -0.5
LSM4-202ENST00000593564 NOTCH2NLQ7Z3S9 236 aa11.92□□□□□ -0.5
LSM4-202ENST00000593564 MT1FP04733 61 aa11.91□□□□□ -0.5
LSM4-202ENST00000593564 LINC00472Q9H8W2 130 aa11.88□□□□□ -0.51
LSM4-202ENST00000593564 H3BQ85 93 aa11.87□□□□□ -0.51
LSM4-202ENST00000593564 DNAL4O96015 105 aa11.87□□□□□ -0.51
LSM4-202ENST00000593564 S100A1P23297 94 aa11.87□□□□□ -0.51
LSM4-202ENST00000593564 FXYD2P54710 66 aa11.87□□□□□ -0.51
LSM4-202ENST00000593564 VAMP8Q9BV40 100 aa11.87□□□□□ -0.51
LSM4-202ENST00000593564 ORMDL1Q9P0S3 153 aa11.87□□□□□ -0.51
LSM4-202ENST00000593564 LCE2BO14633 110 aa11.86□□□□□ -0.51
LSM4-202ENST00000593564 A0A1B0GV72 72 aa11.85□□□□□ -0.51
LSM4-202ENST00000593564 DEFB116Q30KQ4 102 aa11.85□□□□□ -0.51
LSM4-202ENST00000593564 KRTAP9-3Q9BYQ3 159 aa11.85□□□□□ -0.51
LSM4-202ENST00000593564 IGHV6-1A0A0B4J1U7 121 aa11.83□□□□□ -0.52
LSM4-202ENST00000593564 CCKP06307 115 aa11.82□□□□□ -0.52
LSM4-202ENST00000593564 KRTAP10-10P60014 251 aa11.82□□□□□ -0.52
LSM4-202ENST00000593564 TMEM256-PLSCR3K7ERE1 68 aa11.81□□□□□ -0.52
LSM4-202ENST00000593564 TRACP01848 142 aa11.81□□□□□ -0.52
LSM4-202ENST00000593564 KRTAP19-1Q8IUB9 90 aa11.81□□□□□ -0.52
LSM4-202ENST00000593564 PSMB2P49721 201 aa11.76□□□□□ -0.53
LSM4-202ENST00000593564 C8orf87E5RJ46 101 aa11.75□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 6.9 ms