RNA–Protein interactions for RNA: ENST00000586435.1

LIG3-209, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 588 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-209ENST00000586435 C20orf202A1L168 122 aa6.19□□□□□ -1.42
LIG3-209ENST00000586435 KRTDAPP60985 99 aa6.19□□□□□ -1.42
LIG3-209ENST00000586435 Q75L30 129 aa6.19□□□□□ -1.42
LIG3-209ENST00000586435 SLC7A5P1Q8MH63 180 aa6.19□□□□□ -1.42
LIG3-209ENST00000586435 CLEC2BQ92478 149 aa6.19□□□□□ -1.42
LIG3-209ENST00000586435 VAMP3Q15836 100 aa6.17□□□□□ -1.42
LIG3-209ENST00000586435 LINC00575Q6W349 94 aa6.17□□□□□ -1.42
LIG3-209ENST00000586435 ATP11AUNQ6ZP68 121 aa6.17□□□□□ -1.42
LIG3-209ENST00000586435 PCP2Q8IVA1 136 aa6.17□□□□□ -1.42
LIG3-209ENST00000586435 IGFL1Q6UW32 110 aa6.16□□□□□ -1.42
LIG3-209ENST00000586435 Q6ZQY7 126 aa6.16□□□□□ -1.42
LIG3-209ENST00000586435 hADV29S1A0JD25 119 aa6.15□□□□□ -1.42
LIG3-209ENST00000586435 OBSCN-AS1Q96MR7 158 aa6.15□□□□□ -1.42
LIG3-209ENST00000586435 ATOH7Q8N100 152 aa6.14□□□□□ -1.43
LIG3-209ENST00000586435 SNRPEP62304 92 aaKnown RBP6.13□□□□□ -1.43
LIG3-209ENST00000586435 OCIAD2Q56VL3 154 aa6.13□□□□□ -1.43
LIG3-209ENST00000586435 Q6Q795 121 aa6.13□□□□□ -1.43
LIG3-209ENST00000586435 PPDPFLQ8WWR9 84 aa6.13□□□□□ -1.43
LIG3-209ENST00000586435 CFC1P0CG37 223 aa6.12□□□□□ -1.43
LIG3-209ENST00000586435 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP6.12□□□□□ -1.43
LIG3-209ENST00000586435 LST1O00453 97 aa6.1□□□□□ -1.43
LIG3-209ENST00000586435 SCGB1D1O95968 90 aa6.1□□□□□ -1.43
LIG3-209ENST00000586435 C20orf166-AS1Q96NR2 134 aa6.09□□□□□ -1.43
LIG3-209ENST00000586435 KRTAP9-8Q9BYQ0 159 aa6.09□□□□□ -1.43
LIG3-209ENST00000586435 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.08□□□□□ -1.44
LIG3-209ENST00000586435 Q96NJ1 140 aa6.08□□□□□ -1.44
LIG3-209ENST00000586435 SS18L2Q9UHA2 77 aa6.08□□□□□ -1.44
LIG3-209ENST00000586435 KRTAP9-7A8MTY7 169 aa6.07□□□□□ -1.44
LIG3-209ENST00000586435 A8MUU9 505 aa6.07□□□□□ -1.44
LIG3-209ENST00000586435 BVES-AS1Q5T3Y7 98 aa6.07□□□□□ -1.44
LIG3-209ENST00000586435 SNHG12Q9BXW3 62 aa6.07□□□□□ -1.44
LIG3-209ENST00000586435 H3BUT2 72 aa6.05□□□□□ -1.44
LIG3-209ENST00000586435 TRBV20-1A0A075B6N2 111 aa6.04□□□□□ -1.44
LIG3-209ENST00000586435 HSBP1L1C9JCN9 74 aa6.03□□□□□ -1.44
LIG3-209ENST00000586435 TEN1Q86WV5 123 aa6.03□□□□□ -1.44
LIG3-209ENST00000586435 C12orf57Q99622 126 aa6.01□□□□□ -1.45
LIG3-209ENST00000586435 SSPOA2VEC9 5147 aa6□□□□□ -1.45
LIG3-209ENST00000586435 USH2AO75445 5202 aa6□□□□□ -1.45
LIG3-209ENST00000586435 A0A087WSZ3 146 aa5.99□□□□□ -1.45
LIG3-209ENST00000586435 HIST3H2BBQ8N257 126 aa5.99□□□□□ -1.45
LIG3-209ENST00000586435 HIST1H4GQ99525 98 aa5.99□□□□□ -1.45
LIG3-209ENST00000586435 HIST1H2BLQ99880 126 aa5.99□□□□□ -1.45
LIG3-209ENST00000586435 SNCGO76070 127 aa5.98□□□□□ -1.45
LIG3-209ENST00000586435 NDUFV3P56181 108 aaKnown RBP5.98□□□□□ -1.45
LIG3-209ENST00000586435 H0YGX0 51 aa5.97□□□□□ -1.45
LIG3-209ENST00000586435 MT2AP02795 61 aa5.97□□□□□ -1.45
LIG3-209ENST00000586435 S100A2P29034 98 aa5.97□□□□□ -1.45
LIG3-209ENST00000586435 DSCR10P59022 87 aa5.96□□□□□ -1.46
LIG3-209ENST00000586435 FAM218AQ96MZ4 157 aa5.95□□□□□ -1.46
LIG3-209ENST00000586435 KRTAP16-1A8MUX0 517 aa5.94□□□□□ -1.46
LIG3-209ENST00000586435 GHRHP01286 108 aa5.94□□□□□ -1.46
LIG3-209ENST00000586435 COX8AP10176 69 aa5.94□□□□□ -1.46
LIG3-209ENST00000586435 MPLKIPQ8TAP9 179 aa5.94□□□□□ -1.46
LIG3-209ENST00000586435 A0A0B4J2C4 111 aa5.93□□□□□ -1.46
LIG3-209ENST00000586435 FAM236DA0A1B0GTK5 79 aa5.93□□□□□ -1.46
LIG3-209ENST00000586435 A0A1B0GX51 115 aa5.93□□□□□ -1.46
LIG3-209ENST00000586435 H3BMG7 143 aa5.93□□□□□ -1.46
LIG3-209ENST00000586435 DLEU1O43261 78 aa5.93□□□□□ -1.46
LIG3-209ENST00000586435 FAM236CP0DP71 79 aa5.93□□□□□ -1.46
LIG3-209ENST00000586435 RAB37Q96AX2 223 aa5.93□□□□□ -1.46
LIG3-209ENST00000586435 SIGMAR1Q99720 223 aa5.93□□□□□ -1.46
LIG3-209ENST00000586435 LCE2BO14633 110 aa5.92□□□□□ -1.46
LIG3-209ENST00000586435 MT1FP04733 61 aa5.92□□□□□ -1.46
LIG3-209ENST00000586435 LINC00313P59037 77 aa5.92□□□□□ -1.46
LIG3-209ENST00000586435 A0A1W2PNM2 257 aa5.91□□□□□ -1.46
LIG3-209ENST00000586435 HRES1P13985 223 aa5.91□□□□□ -1.46
LIG3-209ENST00000586435 RBM12B-AS1Q9P1G2 102 aa5.91□□□□□ -1.46
LIG3-209ENST00000586435 FCGBPQ9Y6R7 5405 aaPredicted RBP5.91□□□□□ -1.46
LIG3-209ENST00000586435 KRTAP19-1Q8IUB9 90 aa5.9□□□□□ -1.46
LIG3-209ENST00000586435 KRTAP9-3Q9BYQ3 159 aa5.9□□□□□ -1.46
LIG3-209ENST00000586435 IGKV4-1P06312 121 aa5.89□□□□□ -1.47
LIG3-209ENST00000586435 FABP2P12104 132 aa5.89□□□□□ -1.47
LIG3-209ENST00000586435 HIGD1BQ9P298 99 aa5.89□□□□□ -1.47
LIG3-209ENST00000586435 TRBV7-4A0A0J9YYF1 115 aa5.88□□□□□ -1.47
LIG3-209ENST00000586435 S100A6P06703 90 aa5.87□□□□□ -1.47
LIG3-209ENST00000586435 KRTAP10-10P60014 251 aa5.87□□□□□ -1.47
LIG3-209ENST00000586435 NOTCH2NLQ7Z3S9 236 aa5.86□□□□□ -1.47
LIG3-209ENST00000586435 ANKRD29Q8N6D5 301 aa5.85□□□□□ -1.47
LIG3-209ENST00000586435 LINC00472Q9H8W2 130 aa5.85□□□□□ -1.47
LIG3-209ENST00000586435 H3BQ85 93 aa5.84□□□□□ -1.47
LIG3-209ENST00000586435 C2orf91Q6ZV80 131 aa5.84□□□□□ -1.47
LIG3-209ENST00000586435 C14orf144Q96I85 54 aa5.84□□□□□ -1.47
LIG3-209ENST00000586435 PRO1854Q9UHT4 67 aa5.84□□□□□ -1.47
LIG3-209ENST00000586435 TMEM238LA0A1B0GVL6 79 aa5.83□□□□□ -1.48
LIG3-209ENST00000586435 A6NJY4 79 aa5.83□□□□□ -1.48
LIG3-209ENST00000586435 CEND1Q8N111 149 aa5.83□□□□□ -1.48
LIG3-209ENST00000586435 MACF1Q9UPN3 7388 aaKnown RBP5.83□□□□□ -1.48
LIG3-209ENST00000586435 TRIAP1O43715 76 aa5.82□□□□□ -1.48
LIG3-209ENST00000586435 ORMDL1Q9P0S3 153 aa5.82□□□□□ -1.48
LIG3-209ENST00000586435 IGHV6-1A0A0B4J1U7 121 aa5.81□□□□□ -1.48
LIG3-209ENST00000586435 DNAL4O96015 105 aa5.81□□□□□ -1.48
LIG3-209ENST00000586435 SPATA45Q537H7 98 aa5.81□□□□□ -1.48
LIG3-209ENST00000586435 MTURNQ8N3F0 131 aa5.81□□□□□ -1.48
LIG3-209ENST00000586435 C8orf87E5RJ46 101 aa5.8□□□□□ -1.48
LIG3-209ENST00000586435 TRACP01848 142 aa5.8□□□□□ -1.48
LIG3-209ENST00000586435 CCKP06307 115 aa5.8□□□□□ -1.48
LIG3-209ENST00000586435 DEFB116Q30KQ4 102 aa5.8□□□□□ -1.48
LIG3-209ENST00000586435 PAM16Q9Y3D7 125 aa5.8□□□□□ -1.48
LIG3-209ENST00000586435 TMEM256-PLSCR3K7ERE1 68 aa5.79□□□□□ -1.48
LIG3-209ENST00000586435 FXYD2P54710 66 aa5.79□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 71.7 ms