RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 FAM236BA0A1B0GV22 79 aa8.74□□□□□ -1.01
LIG3-205ENST00000585941 HAMPP81172 84 aa8.73□□□□□ -1.01
LIG3-205ENST00000585941 SPRR4Q96PI1 79 aa8.73□□□□□ -1.01
LIG3-205ENST00000585941 PSORS1C2Q9UIG4 136 aa8.73□□□□□ -1.01
LIG3-205ENST00000585941 A0A1W2PNM2 257 aa8.72□□□□□ -1.01
LIG3-205ENST00000585941 NREPQ16612 68 aa8.72□□□□□ -1.01
LIG3-205ENST00000585941 KRTAP10-2P60368 255 aa8.72□□□□□ -1.01
LIG3-205ENST00000585941 ZNF706Q9Y5V0 76 aaPredicted RBP8.72□□□□□ -1.01
LIG3-205ENST00000585941 HIST1H4AP62805 103 aaKnown RBP8.71□□□□□ -1.02
LIG3-205ENST00000585941 CRYGAP11844 174 aa8.7□□□□□ -1.02
LIG3-205ENST00000585941 IGFL1Q6UW32 110 aa8.69□□□□□ -1.02
LIG3-205ENST00000585941 FRAS1Q86XX4 4008 aa8.68□□□□□ -1.02
LIG3-205ENST00000585941 ATOX1O00244 68 aa8.68□□□□□ -1.02
LIG3-205ENST00000585941 ZNF861PO60384 105 aa8.68□□□□□ -1.02
LIG3-205ENST00000585941 Q6ZSA8 131 aa8.68□□□□□ -1.02
LIG3-205ENST00000585941 LCE6AA0A183 80 aa8.66□□□□□ -1.02
LIG3-205ENST00000585941 LINC00483Q53H64 154 aa8.66□□□□□ -1.02
LIG3-205ENST00000585941 CIRBP-AS1Q8TBR5 109 aa8.65□□□□□ -1.02
LIG3-205ENST00000585941 A0A087WVE0 104 aa8.65□□□□□ -1.03
LIG3-205ENST00000585941 RPL37AP61513 92 aaKnown RBP8.65□□□□□ -1.03
LIG3-205ENST00000585941 LINC00336Q6ZUF6 198 aa8.65□□□□□ -1.03
LIG3-205ENST00000585941 BPY2O14599 106 aa8.64□□□□□ -1.03
LIG3-205ENST00000585941 IGLV7-43P04211 117 aa8.63□□□□□ -1.03
LIG3-205ENST00000585941 FAM30AQ9NZY2 134 aa8.63□□□□□ -1.03
LIG3-205ENST00000585941 SRRM2Q9UQ35 2752 aaKnown RBP8.62□□□□□ -1.03
LIG3-205ENST00000585941 KRTAP10-1P60331 282 aa8.62□□□□□ -1.03
LIG3-205ENST00000585941 DNAH11Q96DT5 4516 aa8.62□□□□□ -1.03
LIG3-205ENST00000585941 SCXQ7RTU7 201 aa8.62□□□□□ -1.03
LIG3-205ENST00000585941 DNAH8Q96JB1 4490 aa8.6□□□□□ -1.03
LIG3-205ENST00000585941 FAT2Q9NYQ8 4349 aa8.59□□□□□ -1.04
LIG3-205ENST00000585941 PKD1P98161 4303 aa8.57□□□□□ -1.04
LIG3-205ENST00000585941 DNAH5Q8TE73 4624 aa8.57□□□□□ -1.04
LIG3-205ENST00000585941 A0A087WSZ3 146 aa8.56□□□□□ -1.04
LIG3-205ENST00000585941 A0A0G2JQZ4 141 aa8.56□□□□□ -1.04
LIG3-205ENST00000585941 C9orf153Q5TBE3 101 aa8.56□□□□□ -1.04
LIG3-205ENST00000585941 IGLV9-49A0A0B4J1Y8 123 aa8.56□□□□□ -1.04
LIG3-205ENST00000585941 UQCRQO14949 82 aa8.56□□□□□ -1.04
LIG3-205ENST00000585941 SMIM20Q8N5G0 67 aa8.56□□□□□ -1.04
LIG3-205ENST00000585941 SERP2Q8N6R1 65 aa8.56□□□□□ -1.04
LIG3-205ENST00000585941 IGKV4-1P06312 121 aa8.55□□□□□ -1.04
LIG3-205ENST00000585941 COX7CP15954 63 aa8.55□□□□□ -1.04
LIG3-205ENST00000585941 HYDINQ4G0P3 5121 aa8.54□□□□□ -1.04
LIG3-205ENST00000585941 SACSQ9NZJ4 4579 aa8.53□□□□□ -1.04
LIG3-205ENST00000585941 CCDC179H3BU77 68 aa8.53□□□□□ -1.04
LIG3-205ENST00000585941 MOBPQ13875 183 aa8.5□□□□□ -1.05
LIG3-205ENST00000585941 Q8N9L7 120 aa8.5□□□□□ -1.05
LIG3-205ENST00000585941 DSCR10P59022 87 aa8.49□□□□□ -1.05
LIG3-205ENST00000585941 SS18L2Q9UHA2 77 aa8.49□□□□□ -1.05
LIG3-205ENST00000585941 TRAV7A0A075B6U4 112 aa8.48□□□□□ -1.05
LIG3-205ENST00000585941 J3KT08 172 aa8.48□□□□□ -1.05
LIG3-205ENST00000585941 SVIPQ8NHG7 77 aa8.48□□□□□ -1.05
LIG3-205ENST00000585941 LINC00472Q9H8W2 130 aa8.46□□□□□ -1.05
LIG3-205ENST00000585941 A0A1B0GVY2 172 aa8.46□□□□□ -1.06
LIG3-205ENST00000585941 SSBP3-AS1Q7Z2R9 100 aa8.46□□□□□ -1.06
LIG3-205ENST00000585941 ANAPC11Q9NYG5 84 aa8.46□□□□□ -1.06
LIG3-205ENST00000585941 K7EQZ3 153 aa8.45□□□□□ -1.06
LIG3-205ENST00000585941 FAM229BQ4G0N7 80 aa8.45□□□□□ -1.06
LIG3-205ENST00000585941 CD164Q04900 197 aa8.44□□□□□ -1.06
LIG3-205ENST00000585941 A8MWP4 228 aa8.42□□□□□ -1.06
LIG3-205ENST00000585941 DEFB116Q30KQ4 102 aa8.42□□□□□ -1.06
LIG3-205ENST00000585941 HCG22E2RYF7 251 aa8.4□□□□□ -1.06
LIG3-205ENST00000585941 HRCT1Q6UXD1 115 aa8.4□□□□□ -1.07
LIG3-205ENST00000585941 PRR15Q8IV56 129 aa8.4□□□□□ -1.07
LIG3-205ENST00000585941 NDUFB1O75438 58 aa8.39□□□□□ -1.07
LIG3-205ENST00000585941 LRP1BQ9NZR2 4599 aa8.39□□□□□ -1.07
LIG3-205ENST00000585941 OCR1Q9BZK8 76 aa8.37□□□□□ -1.07
LIG3-205ENST00000585941 SPINK6Q6UWN8 80 aa8.37□□□□□ -1.07
LIG3-205ENST00000585941 Q96NJ1 140 aa8.37□□□□□ -1.07
LIG3-205ENST00000585941 PKHD1P08F94 4074 aa8.35□□□□□ -1.07
LIG3-205ENST00000585941 KRTAP1-4P0C5Y4 121 aa8.34□□□□□ -1.07
LIG3-205ENST00000585941 A0A087X002 238 aa8.34□□□□□ -1.08
LIG3-205ENST00000585941 C20orf197Q8N268 126 aa8.34□□□□□ -1.08
LIG3-205ENST00000585941 CDK2AP2O75956 126 aa8.33□□□□□ -1.08
LIG3-205ENST00000585941 ASB16-AS1Q495Z4 193 aa8.33□□□□□ -1.08
LIG3-205ENST00000585941 KRTAP13-2Q52LG2 175 aa8.32□□□□□ -1.08
LIG3-205ENST00000585941 KLKP1Q107X0 134 aa8.31□□□□□ -1.08
LIG3-205ENST00000585941 CASC2Q6XLA1 102 aa8.31□□□□□ -1.08
LIG3-205ENST00000585941 RYR2Q92736 4967 aa8.31□□□□□ -1.08
LIG3-205ENST00000585941 KRTAP29-1A8MX34 341 aaPredicted RBP8.3□□□□□ -1.08
LIG3-205ENST00000585941 PLA2G1BP04054 148 aaKnown RBP8.3□□□□□ -1.08
LIG3-205ENST00000585941 VPS13BQ7Z7G8 4022 aa8.3□□□□□ -1.08
LIG3-205ENST00000585941 Q5XG85 94 aa8.3□□□□□ -1.08
LIG3-205ENST00000585941 WFDC13Q8IUB5 93 aa8.3□□□□□ -1.08
LIG3-205ENST00000585941 DYNC1H1Q14204 4646 aaKnown RBP8.28□□□□□ -1.08
LIG3-205ENST00000585941 A0A1B0GVX0 72 aa8.27□□□□□ -1.08
LIG3-205ENST00000585941 NDUFC1O43677 76 aa8.27□□□□□ -1.08
LIG3-205ENST00000585941 TMEM254Q8TBM7 123 aa8.27□□□□□ -1.08
LIG3-205ENST00000585941 MMP24-AS1A0A0U1RRL7 71 aa8.27□□□□□ -1.09
LIG3-205ENST00000585941 TMEM258P61165 79 aa8.27□□□□□ -1.09
LIG3-205ENST00000585941 SMR3BP02814 79 aaPredicted RBP8.26□□□□□ -1.09
LIG3-205ENST00000585941 C5orf47Q569G3 176 aa8.26□□□□□ -1.09
LIG3-205ENST00000585941 LIMD2Q9BT23 127 aa8.26□□□□□ -1.09
LIG3-205ENST00000585941 TYMSOSQ8TAI1 123 aa8.25□□□□□ -1.09
LIG3-205ENST00000585941 CYSTM1Q9H1C7 97 aa8.25□□□□□ -1.09
LIG3-205ENST00000585941 hDV103S1A0JD37 113 aa8.24□□□□□ -1.09
LIG3-205ENST00000585941 C4orf48Q5BLP8 95 aa8.24□□□□□ -1.09
LIG3-205ENST00000585941 C8orf17Q9NRJ1 99 aa8.24□□□□□ -1.09
LIG3-205ENST00000585941 KMT2CQ8NEZ4 4911 aaKnown RBP8.23□□□□□ -1.09
LIG3-205ENST00000585941 SNURFQ9Y675 71 aa8.23□□□□□ -1.09
LIG3-205ENST00000585941 IGHV6-1A0A0B4J1U7 121 aa8.22□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 75.5 ms