RNA–Protein interactions for RNA: ENST00000585466.1

CLIP3-202, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 2

Gene CLIP3, Length 368 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-202ENST00000585466 PAM16Q9Y3D7 125 aa8.3□□□□□ -1.08
CLIP3-202ENST00000585466 CFC1BP0CG36 223 aa8.29□□□□□ -1.08
CLIP3-202ENST00000585466 CFC1P0CG37 223 aa8.29□□□□□ -1.08
CLIP3-202ENST00000585466 VAMP3Q15836 100 aa8.29□□□□□ -1.08
CLIP3-202ENST00000585466 SPATA45Q537H7 98 aa8.29□□□□□ -1.08
CLIP3-202ENST00000585466 IGLV8-61A0A075B6I0 122 aa8.28□□□□□ -1.08
CLIP3-202ENST00000585466 hADV29S1A0JD25 119 aa8.28□□□□□ -1.08
CLIP3-202ENST00000585466 SEC61BP60468 96 aaKnown RBP8.28□□□□□ -1.08
CLIP3-202ENST00000585466 C1orf195Q5TG92 126 aa8.28□□□□□ -1.08
CLIP3-202ENST00000585466 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP8.25□□□□□ -1.09
CLIP3-202ENST00000585466 VAMP8Q9BV40 100 aa8.25□□□□□ -1.09
CLIP3-202ENST00000585466 A0A0B4J2C4 111 aa8.24□□□□□ -1.09
CLIP3-202ENST00000585466 BVES-AS1Q5T3Y7 98 aa8.24□□□□□ -1.09
CLIP3-202ENST00000585466 C9orf92A6NGG3 77 aa8.23□□□□□ -1.09
CLIP3-202ENST00000585466 KRTAP9-2Q9BYQ4 174 aa8.23□□□□□ -1.09
CLIP3-202ENST00000585466 IGFL1Q6UW32 110 aa8.22□□□□□ -1.09
CLIP3-202ENST00000585466 FAM218AQ96MZ4 157 aa8.22□□□□□ -1.09
CLIP3-202ENST00000585466 F8WEM9 126 aa8.2□□□□□ -1.1
CLIP3-202ENST00000585466 OCIAD2Q56VL3 154 aa8.2□□□□□ -1.1
CLIP3-202ENST00000585466 Q6JHZ5 121 aa8.2□□□□□ -1.1
CLIP3-202ENST00000585466 CEND1Q8N111 149 aa8.2□□□□□ -1.1
CLIP3-202ENST00000585466 PPDPFLQ8WWR9 84 aa8.2□□□□□ -1.1
CLIP3-202ENST00000585466 CLEC2BQ92478 149 aa8.2□□□□□ -1.1
CLIP3-202ENST00000585466 FXYD2P54710 66 aa8.19□□□□□ -1.1
CLIP3-202ENST00000585466 KRTAP19-2Q3LHN2 52 aa8.19□□□□□ -1.1
CLIP3-202ENST00000585466 TRBV7-7A0A0K0K1E9 115 aa8.18□□□□□ -1.1
CLIP3-202ENST00000585466 RAB37Q96AX2 223 aa8.18□□□□□ -1.1
CLIP3-202ENST00000585466 PCOTHQ58A44 107 aa8.17□□□□□ -1.1
CLIP3-202ENST00000585466 LCE2CQ5TA81 110 aa8.17□□□□□ -1.1
CLIP3-202ENST00000585466 PCP4L1A6NKN8 68 aa8.16□□□□□ -1.1
CLIP3-202ENST00000585466 TSTD3H0UI37 97 aa8.16□□□□□ -1.1
CLIP3-202ENST00000585466 H3BUT2 72 aa8.16□□□□□ -1.1
CLIP3-202ENST00000585466 TCL1BO95988 128 aa8.16□□□□□ -1.1
CLIP3-202ENST00000585466 H0YGX0 51 aa8.15□□□□□ -1.1
CLIP3-202ENST00000585466 PRO1854Q9UHT4 67 aa8.14□□□□□ -1.11
CLIP3-202ENST00000585466 SNHG12Q9BXW3 62 aa8.13□□□□□ -1.11
CLIP3-202ENST00000585466 UQCR10Q9UDW1 63 aa8.12□□□□□ -1.11
CLIP3-202ENST00000585466 TMEM238LA0A1B0GVL6 79 aa8.11□□□□□ -1.11
CLIP3-202ENST00000585466 A6NJY4 79 aa8.11□□□□□ -1.11
CLIP3-202ENST00000585466 TRIAP1O43715 76 aa8.11□□□□□ -1.11
CLIP3-202ENST00000585466 RPL37P61927 97 aaKnown RBP8.11□□□□□ -1.11
CLIP3-202ENST00000585466 Q6Q795 121 aa8.1□□□□□ -1.11
CLIP3-202ENST00000585466 A0A1B0GX51 115 aa8.09□□□□□ -1.11
CLIP3-202ENST00000585466 NDUFV3P56181 108 aaKnown RBP8.09□□□□□ -1.11
CLIP3-202ENST00000585466 HSD52Q0P140 79 aa8.09□□□□□ -1.11
CLIP3-202ENST00000585466 K7ERJ3 54 aa8.08□□□□□ -1.12
CLIP3-202ENST00000585466 SNCGO76070 127 aa8.03□□□□□ -1.12
CLIP3-202ENST00000585466 TEN1Q86WV5 123 aa8.03□□□□□ -1.12
CLIP3-202ENST00000585466 Q96NJ1 140 aa8.03□□□□□ -1.12
CLIP3-202ENST00000585466 FLGP20930 4061 aaPredicted RBP8.02□□□□□ -1.13
CLIP3-202ENST00000585466 H3BMG7 143 aa8.02□□□□□ -1.13
CLIP3-202ENST00000585466 LST1O00453 97 aa8.02□□□□□ -1.13
CLIP3-202ENST00000585466 MT1HP80294 61 aa8.02□□□□□ -1.13
CLIP3-202ENST00000585466 A0A1W2PNM2 257 aa8.01□□□□□ -1.13
CLIP3-202ENST00000585466 FABP2P12104 132 aa8□□□□□ -1.13
CLIP3-202ENST00000585466 OBSCN-AS1Q96MR7 158 aa8□□□□□ -1.13
CLIP3-202ENST00000585466 A0A087WSZ3 146 aa7.99□□□□□ -1.13
CLIP3-202ENST00000585466 SS18L2Q9UHA2 77 aa7.99□□□□□ -1.13
CLIP3-202ENST00000585466 KRTAP9-6A0A140TA67 174 aa7.98□□□□□ -1.13
CLIP3-202ENST00000585466 Q75L30 129 aa7.98□□□□□ -1.13
CLIP3-202ENST00000585466 GHRHP01286 108 aa7.96□□□□□ -1.14
CLIP3-202ENST00000585466 PSMB2P49721 201 aa7.96□□□□□ -1.14
CLIP3-202ENST00000585466 ORMDL1Q9P0S3 153 aa7.96□□□□□ -1.14
CLIP3-202ENST00000585466 M0R143 59 aa7.95□□□□□ -1.14
CLIP3-202ENST00000585466 DNAL4O96015 105 aa7.93□□□□□ -1.14
CLIP3-202ENST00000585466 C20orf166-AS1Q96NR2 134 aa7.93□□□□□ -1.14
CLIP3-202ENST00000585466 A0A1B0GV72 72 aa7.92□□□□□ -1.14
CLIP3-202ENST00000585466 COX6CP09669 75 aa7.92□□□□□ -1.14
CLIP3-202ENST00000585466 TRBV7-4A0A0J9YYF1 115 aa7.91□□□□□ -1.14
CLIP3-202ENST00000585466 A8MUU9 505 aa7.91□□□□□ -1.14
CLIP3-202ENST00000585466 H3BQ85 93 aa7.91□□□□□ -1.14
CLIP3-202ENST00000585466 TMEM256-PLSCR3K7ERE1 68 aa7.91□□□□□ -1.14
CLIP3-202ENST00000585466 TRACP01848 142 aa7.91□□□□□ -1.14
CLIP3-202ENST00000585466 BATFQ16520 125 aa7.91□□□□□ -1.14
CLIP3-202ENST00000585466 UBE2V1Q13404 147 aa7.9□□□□□ -1.14
CLIP3-202ENST00000585466 ANKRD29Q8N6D5 301 aa7.9□□□□□ -1.14
CLIP3-202ENST00000585466 LCE2DQ5TA82 110 aaPredicted RBP7.89□□□□□ -1.15
CLIP3-202ENST00000585466 LORP23490 312 aaPredicted RBP7.87□□□□□ -1.15
CLIP3-202ENST00000585466 ATP11AUNQ6ZP68 121 aa7.87□□□□□ -1.15
CLIP3-202ENST00000585466 LINC00472Q9H8W2 130 aa7.87□□□□□ -1.15
CLIP3-202ENST00000585466 KRTAP16-1A8MUX0 517 aa7.86□□□□□ -1.15
CLIP3-202ENST00000585466 DSCR10P59022 87 aa7.86□□□□□ -1.15
CLIP3-202ENST00000585466 CCKP06307 115 aa7.85□□□□□ -1.15
CLIP3-202ENST00000585466 KRTAP10-6P60371 365 aaPredicted RBP7.85□□□□□ -1.15
CLIP3-202ENST00000585466 COL5A1-AS1Q5SY13 56 aa7.85□□□□□ -1.15
CLIP3-202ENST00000585466 NOTCH2NLQ7Z3S9 236 aa7.84□□□□□ -1.15
CLIP3-202ENST00000585466 SIGMAR1Q99720 223 aa7.84□□□□□ -1.15
CLIP3-202ENST00000585466 SCGB1C2P0DMR2 95 aa7.83□□□□□ -1.16
CLIP3-202ENST00000585466 IGKV4-1P06312 121 aa7.82□□□□□ -1.16
CLIP3-202ENST00000585466 DEFB116Q30KQ4 102 aa7.81□□□□□ -1.16
CLIP3-202ENST00000585466 NAA38Q9BRA0 125 aaKnown RBP7.81□□□□□ -1.16
CLIP3-202ENST00000585466 TAX1BP3O14907 124 aa7.8□□□□□ -1.16
CLIP3-202ENST00000585466 BAALC-AS2P0C853 105 aa7.8□□□□□ -1.16
CLIP3-202ENST00000585466 COX6B2Q6YFQ2 88 aa7.8□□□□□ -1.16
CLIP3-202ENST00000585466 FSIP2Q5CZC0 6907 aa7.8□□□□□ -1.16
CLIP3-202ENST00000585466 RBM3P98179 157 aaKnown RBP7.79□□□□□ -1.16
CLIP3-202ENST00000585466 LINC00313P59037 77 aa7.78□□□□□ -1.16
CLIP3-202ENST00000585466 A0A1B0GV90 55 aa7.76□□□□□ -1.17
CLIP3-202ENST00000585466 DSCR8Q96T75 97 aa7.75□□□□□ -1.17
CLIP3-202ENST00000585466 C9orf118A6NHY6 69 aa7.74□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 61.3 ms