RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 PKHD1L1Q86WI1 4243 aa15.03■□□□□ -0
SHMT1-207ENST00000580002 SPRR1BP22528 89 aa15.01□□□□□ -0.01
SHMT1-207ENST00000580002 PLA2G1BP04054 148 aaKnown RBP15.01□□□□□ -0.01
SHMT1-207ENST00000580002 NDUFV3P56181 108 aaKnown RBP15.01□□□□□ -0.01
SHMT1-207ENST00000580002 LAMTOR3Q9UHA4 124 aa15.01□□□□□ -0.01
SHMT1-207ENST00000580002 LINC00483Q53H64 154 aa14.99□□□□□ -0.01
SHMT1-207ENST00000580002 SPINK6Q6UWN8 80 aa14.99□□□□□ -0.01
SHMT1-207ENST00000580002 Q8N1X5 172 aa14.98□□□□□ -0.01
SHMT1-207ENST00000580002 KRTAP1-4P0C5Y4 121 aa14.98□□□□□ -0.01
SHMT1-207ENST00000580002 ZNF706Q9Y5V0 76 aaPredicted RBP14.98□□□□□ -0.01
SHMT1-207ENST00000580002 PPDPFLQ8WWR9 84 aa14.96□□□□□ -0.02
SHMT1-207ENST00000580002 A0A0G2JQZ4 141 aa14.95□□□□□ -0.02
SHMT1-207ENST00000580002 TEN1Q86WV5 123 aa14.94□□□□□ -0.02
SHMT1-207ENST00000580002 H3BQ85 93 aa14.93□□□□□ -0.02
SHMT1-207ENST00000580002 GHRHP01286 108 aa14.93□□□□□ -0.02
SHMT1-207ENST00000580002 KRTAP4-5Q9BYR2 181 aa14.93□□□□□ -0.02
SHMT1-207ENST00000580002 IGLV9-49A0A0B4J1Y8 123 aa14.92□□□□□ -0.02
SHMT1-207ENST00000580002 OBSCN-AS1Q96MR7 158 aa14.92□□□□□ -0.02
SHMT1-207ENST00000580002 A0A087X002 238 aa14.91□□□□□ -0.02
SHMT1-207ENST00000580002 C14orf132Q9NPU4 83 aa14.9□□□□□ -0.02
SHMT1-207ENST00000580002 HERC2O95714 4834 aa14.89□□□□□ -0.03
SHMT1-207ENST00000580002 K7ERU9 68 aa14.88□□□□□ -0.03
SHMT1-207ENST00000580002 LRP1Q07954 4544 aaKnown RBP14.87□□□□□ -0.03
SHMT1-207ENST00000580002 RBM3P98179 157 aaKnown RBP14.86□□□□□ -0.03
SHMT1-207ENST00000580002 KRTAP13-2Q52LG2 175 aa14.86□□□□□ -0.03
SHMT1-207ENST00000580002 JMJD7-PLA2G4BH0Y9G9 81 aa14.83□□□□□ -0.03
SHMT1-207ENST00000580002 MOBPQ13875 183 aa14.83□□□□□ -0.03
SHMT1-207ENST00000580002 F8WEM9 126 aa14.83□□□□□ -0.04
SHMT1-207ENST00000580002 C9orf153Q5TBE3 101 aa14.83□□□□□ -0.04
SHMT1-207ENST00000580002 PRR26Q8N8Z3 221 aa14.8□□□□□ -0.04
SHMT1-207ENST00000580002 FLG2Q5D862 2391 aaPredicted RBP14.8□□□□□ -0.04
SHMT1-207ENST00000580002 IGLV8-61A0A075B6I0 122 aa14.8□□□□□ -0.04
SHMT1-207ENST00000580002 TRBV7-4A0A0J9YYF1 115 aa14.8□□□□□ -0.04
SHMT1-207ENST00000580002 J3QR89 54 aa14.8□□□□□ -0.04
SHMT1-207ENST00000580002 IGFL1Q6UW32 110 aa14.8□□□□□ -0.04
SHMT1-207ENST00000580002 FAT3Q8TDW7 4589 aa14.78□□□□□ -0.04
SHMT1-207ENST00000580002 FAM229BQ4G0N7 80 aa14.78□□□□□ -0.04
SHMT1-207ENST00000580002 DSCR8Q96T75 97 aa14.77□□□□□ -0.05
SHMT1-207ENST00000580002 CRYGAP11844 174 aa14.76□□□□□ -0.05
SHMT1-207ENST00000580002 Q6ZQT0 140 aa14.76□□□□□ -0.05
SHMT1-207ENST00000580002 MYCBP2O75592 4640 aa14.74□□□□□ -0.05
SHMT1-207ENST00000580002 ABCA13Q86UQ4 5058 aa14.73□□□□□ -0.05
SHMT1-207ENST00000580002 LOC110117498A0A087WWA1 95 aa14.73□□□□□ -0.05
SHMT1-207ENST00000580002 A0A1W2PNM2 257 aa14.73□□□□□ -0.05
SHMT1-207ENST00000580002 VPS25Q9BRG1 176 aa14.73□□□□□ -0.05
SHMT1-207ENST00000580002 Q8NBF4 154 aa14.72□□□□□ -0.05
SHMT1-207ENST00000580002 CCKP06307 115 aa14.69□□□□□ -0.06
SHMT1-207ENST00000580002 HRCT1Q6UXD1 115 aa14.69□□□□□ -0.06
SHMT1-207ENST00000580002 TNXBP22105 4242 aa14.67□□□□□ -0.06
SHMT1-207ENST00000580002 Q6JHZ5 121 aa14.67□□□□□ -0.06
SHMT1-207ENST00000580002 TYMSOSQ8TAI1 123 aa14.66□□□□□ -0.06
SHMT1-207ENST00000580002 SSBP3-AS1Q7Z2R9 100 aa14.64□□□□□ -0.07
SHMT1-207ENST00000580002 PDE6GP18545 87 aa14.6□□□□□ -0.07
SHMT1-207ENST00000580002 KRTAP10-8P60410 259 aa14.56□□□□□ -0.08
SHMT1-207ENST00000580002 LINC00846Q9NV44 126 aa14.54□□□□□ -0.08
SHMT1-207ENST00000580002 A0A087WSZ3 146 aa14.52□□□□□ -0.08
SHMT1-207ENST00000580002 FAM240AA0A1B0GVK7 77 aa14.52□□□□□ -0.09
SHMT1-207ENST00000580002 Q6Q795 121 aa14.52□□□□□ -0.09
SHMT1-207ENST00000580002 TRBV7-7A0A0K0K1E9 115 aa14.51□□□□□ -0.09
SHMT1-207ENST00000580002 MT1HL1P0DM35 61 aa14.5□□□□□ -0.09
SHMT1-207ENST00000580002 LINC00304Q8N9R0 145 aa14.48□□□□□ -0.09
SHMT1-207ENST00000580002 ACYP1P07311 99 aa14.45□□□□□ -0.1
SHMT1-207ENST00000580002 CD164Q04900 197 aa14.44□□□□□ -0.1
SHMT1-207ENST00000580002 CDIP1Q9H305 208 aa14.42□□□□□ -0.1
SHMT1-207ENST00000580002 C4orf48Q5BLP8 95 aa14.42□□□□□ -0.1
SHMT1-207ENST00000580002 DEFB116Q30KQ4 102 aa14.38□□□□□ -0.11
SHMT1-207ENST00000580002 Q6ZVQ6 151 aa14.38□□□□□ -0.11
SHMT1-207ENST00000580002 DMBT1Q9UGM3 2413 aaPredicted RBP14.37□□□□□ -0.11
SHMT1-207ENST00000580002 OXTP01178 125 aa14.37□□□□□ -0.11
SHMT1-207ENST00000580002 C21orf62-AS1Q17RA5 79 aa14.37□□□□□ -0.11
SHMT1-207ENST00000580002 A0A1B0GW54 56 aa14.35□□□□□ -0.11
SHMT1-207ENST00000580002 SPINK1P00995 79 aa14.35□□□□□ -0.11
SHMT1-207ENST00000580002 NREPQ16612 68 aa14.34□□□□□ -0.11
SHMT1-207ENST00000580002 KRTAP29-1A8MX34 341 aaPredicted RBP14.34□□□□□ -0.11
SHMT1-207ENST00000580002 SPAG11AQ6PDA7 123 aa14.33□□□□□ -0.12
SHMT1-207ENST00000580002 Q96NJ1 140 aa14.32□□□□□ -0.12
SHMT1-207ENST00000580002 UBL5Q9BZL1 73 aa14.32□□□□□ -0.12
SHMT1-207ENST00000580002 PCLOQ9Y6V0 5065 aa14.31□□□□□ -0.12
SHMT1-207ENST00000580002 SIGMAR1Q99720 223 aa14.3□□□□□ -0.12
SHMT1-207ENST00000580002 LINC00472Q9H8W2 130 aa14.29□□□□□ -0.12
SHMT1-207ENST00000580002 Q5XG85 94 aa14.27□□□□□ -0.13
SHMT1-207ENST00000580002 SS18L2Q9UHA2 77 aa14.26□□□□□ -0.13
SHMT1-207ENST00000580002 C1orf195Q5TG92 126 aa14.24□□□□□ -0.13
SHMT1-207ENST00000580002 RETNLBQ9BQ08 111 aa14.24□□□□□ -0.13
SHMT1-207ENST00000580002 IGKV3D-7A0A0C4DH55 119 aa14.23□□□□□ -0.13
SHMT1-207ENST00000580002 LIMD2Q9BT23 127 aa14.23□□□□□ -0.13
SHMT1-207ENST00000580002 RPS29P62273 56 aaKnown RBP14.22□□□□□ -0.13
SHMT1-207ENST00000580002 ASB16-AS1Q495Z4 193 aa14.2□□□□□ -0.14
SHMT1-207ENST00000580002 MT-ATP8P03928 68 aa14.19□□□□□ -0.14
SHMT1-207ENST00000580002 LINC00643Q86TS7 51 aa14.19□□□□□ -0.14
SHMT1-207ENST00000580002 J3QL48 77 aa14.18□□□□□ -0.14
SHMT1-207ENST00000580002 BPY2O14599 106 aa14.17□□□□□ -0.14
SHMT1-207ENST00000580002 IGKV4-1P06312 121 aa14.17□□□□□ -0.14
SHMT1-207ENST00000580002 Q8N9L7 120 aa14.17□□□□□ -0.14
SHMT1-207ENST00000580002 DSCR10P59022 87 aa14.17□□□□□ -0.14
SHMT1-207ENST00000580002 K7EQZ3 153 aa14.08□□□□□ -0.16
SHMT1-207ENST00000580002 SCGB1A1P11684 91 aa14.08□□□□□ -0.16
SHMT1-207ENST00000580002 CXCL6P80162 114 aa14.06□□□□□ -0.16
SHMT1-207ENST00000580002 ATP5EP2Q5VTU8 51 aa14.04□□□□□ -0.16
SHMT1-207ENST00000580002 IMUPQ9GZP8 106 aa14.04□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms