RNA–Protein interactions for RNA: ENST00000578954.5

SS18-211, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 756 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-211ENST00000578954 UBE2V1Q13404 147 aa9.68□□□□□ -0.86
SS18-211ENST00000578954 TMEM256-PLSCR3K7ERE1 68 aa9.67□□□□□ -0.86
SS18-211ENST00000578954 KRTAP1-4P0C5Y4 121 aa9.67□□□□□ -0.86
SS18-211ENST00000578954 BAALC-AS2P0C853 105 aa9.67□□□□□ -0.86
SS18-211ENST00000578954 GAGE2AQ6NT46 116 aa9.66□□□□□ -0.86
SS18-211ENST00000578954 DEFB105AQ8NG35 78 aa9.66□□□□□ -0.86
SS18-211ENST00000578954 SMCPP49901 116 aaPredicted RBP9.65□□□□□ -0.86
SS18-211ENST00000578954 SMIM29Q86T20 159 aa9.65□□□□□ -0.86
SS18-211ENST00000578954 MTURNQ8N3F0 131 aa9.64□□□□□ -0.87
SS18-211ENST00000578954 F8W1H4 67 aa9.63□□□□□ -0.87
SS18-211ENST00000578954 FAM229BQ4G0N7 80 aa9.63□□□□□ -0.87
SS18-211ENST00000578954 ANKRD29Q8N6D5 301 aa9.63□□□□□ -0.87
SS18-211ENST00000578954 NDUFV3P56181 108 aaKnown RBP9.6□□□□□ -0.87
SS18-211ENST00000578954 LAMTOR3Q9UHA4 124 aa9.6□□□□□ -0.87
SS18-211ENST00000578954 C3orf22Q8N5N4 141 aa9.59□□□□□ -0.87
SS18-211ENST00000578954 ANAPC11Q9NYG5 84 aa9.59□□□□□ -0.87
SS18-211ENST00000578954 IGLV8-61A0A075B6I0 122 aa9.58□□□□□ -0.88
SS18-211ENST00000578954 OBSCN-AS1Q96MR7 158 aa9.57□□□□□ -0.88
SS18-211ENST00000578954 KRTAP4-5Q9BYR2 181 aa9.57□□□□□ -0.88
SS18-211ENST00000578954 A0A087X002 238 aa9.56□□□□□ -0.88
SS18-211ENST00000578954 CRYGAP11844 174 aa9.55□□□□□ -0.88
SS18-211ENST00000578954 F8WEM9 126 aa9.54□□□□□ -0.88
SS18-211ENST00000578954 JMJD7-PLA2G4BH0Y9G9 81 aa9.54□□□□□ -0.88
SS18-211ENST00000578954 LCE2BO14633 110 aa9.54□□□□□ -0.88
SS18-211ENST00000578954 KRTAP13-2Q52LG2 175 aa9.54□□□□□ -0.88
SS18-211ENST00000578954 TEN1Q86WV5 123 aa9.52□□□□□ -0.89
SS18-211ENST00000578954 Q8NBF4 154 aa9.52□□□□□ -0.89
SS18-211ENST00000578954 IGLV9-49A0A0B4J1Y8 123 aa9.51□□□□□ -0.89
SS18-211ENST00000578954 TRBV7-4A0A0J9YYF1 115 aa9.5□□□□□ -0.89
SS18-211ENST00000578954 RBM3P98179 157 aaKnown RBP9.5□□□□□ -0.89
SS18-211ENST00000578954 MOBPQ13875 183 aa9.5□□□□□ -0.89
SS18-211ENST00000578954 ETDBQ3ZM63 59 aa9.5□□□□□ -0.89
SS18-211ENST00000578954 Q6JHZ5 121 aa9.5□□□□□ -0.89
SS18-211ENST00000578954 FAT3Q8TDW7 4589 aa9.49□□□□□ -0.89
SS18-211ENST00000578954 FLG2Q5D862 2391 aaPredicted RBP9.49□□□□□ -0.89
SS18-211ENST00000578954 C9orf153Q5TBE3 101 aa9.49□□□□□ -0.89
SS18-211ENST00000578954 SSBP3-AS1Q7Z2R9 100 aa9.49□□□□□ -0.89
SS18-211ENST00000578954 PRR26Q8N8Z3 221 aa9.49□□□□□ -0.89
SS18-211ENST00000578954 ABCA13Q86UQ4 5058 aa9.47□□□□□ -0.89
SS18-211ENST00000578954 LOC110117498A0A087WWA1 95 aa9.47□□□□□ -0.89
SS18-211ENST00000578954 IGFL1Q6UW32 110 aa9.47□□□□□ -0.89
SS18-211ENST00000578954 LRP1Q07954 4544 aaKnown RBP9.46□□□□□ -0.89
SS18-211ENST00000578954 A0A1B0GV72 72 aa9.46□□□□□ -0.9
SS18-211ENST00000578954 TYMSOSQ8TAI1 123 aa9.45□□□□□ -0.9
SS18-211ENST00000578954 DSCR8Q96T75 97 aa9.45□□□□□ -0.9
SS18-211ENST00000578954 C14orf132Q9NPU4 83 aa9.45□□□□□ -0.9
SS18-211ENST00000578954 PDE6GP18545 87 aa9.44□□□□□ -0.9
SS18-211ENST00000578954 OXTP01178 125 aa9.43□□□□□ -0.9
SS18-211ENST00000578954 KRTAP10-8P60410 259 aa9.43□□□□□ -0.9
SS18-211ENST00000578954 C21orf62-AS1Q17RA5 79 aa9.43□□□□□ -0.9
SS18-211ENST00000578954 Q6ZQT0 140 aa9.43□□□□□ -0.9
SS18-211ENST00000578954 MYCBP2O75592 4640 aa9.42□□□□□ -0.9
SS18-211ENST00000578954 A0A0G2JQZ4 141 aa9.41□□□□□ -0.9
SS18-211ENST00000578954 Q6Q795 121 aa9.41□□□□□ -0.9
SS18-211ENST00000578954 A0A1W2PNM2 257 aa9.4□□□□□ -0.9
SS18-211ENST00000578954 CD164Q04900 197 aa9.4□□□□□ -0.9
SS18-211ENST00000578954 TNXBP22105 4242 aa9.4□□□□□ -0.91
SS18-211ENST00000578954 MT1HL1P0DM35 61 aa9.39□□□□□ -0.91
SS18-211ENST00000578954 KRTAP29-1A8MX34 341 aaPredicted RBP9.38□□□□□ -0.91
SS18-211ENST00000578954 CCKP06307 115 aa9.38□□□□□ -0.91
SS18-211ENST00000578954 LINC00304Q8N9R0 145 aa9.36□□□□□ -0.91
SS18-211ENST00000578954 A0A1B0GW54 56 aa9.35□□□□□ -0.91
SS18-211ENST00000578954 TRBV7-7A0A0K0K1E9 115 aa9.34□□□□□ -0.91
SS18-211ENST00000578954 SPAG11AQ6PDA7 123 aa9.34□□□□□ -0.91
SS18-211ENST00000578954 RPS29P62273 56 aaKnown RBP9.33□□□□□ -0.92
SS18-211ENST00000578954 SPINK1P00995 79 aa9.32□□□□□ -0.92
SS18-211ENST00000578954 Q5XG85 94 aa9.31□□□□□ -0.92
SS18-211ENST00000578954 VPS25Q9BRG1 176 aa9.31□□□□□ -0.92
SS18-211ENST00000578954 C4orf48Q5BLP8 95 aa9.3□□□□□ -0.92
SS18-211ENST00000578954 HRCT1Q6UXD1 115 aa9.29□□□□□ -0.92
SS18-211ENST00000578954 A0A087WSZ3 146 aa9.28□□□□□ -0.92
SS18-211ENST00000578954 FAM240AA0A1B0GVK7 77 aa9.28□□□□□ -0.92
SS18-211ENST00000578954 J3QR89 54 aa9.25□□□□□ -0.93
SS18-211ENST00000578954 ACYP1P07311 99 aa9.25□□□□□ -0.93
SS18-211ENST00000578954 ASB16-AS1Q495Z4 193 aa9.25□□□□□ -0.93
SS18-211ENST00000578954 LIMD2Q9BT23 127 aa9.25□□□□□ -0.93
SS18-211ENST00000578954 SS18L2Q9UHA2 77 aa9.25□□□□□ -0.93
SS18-211ENST00000578954 DMBT1Q9UGM3 2413 aaPredicted RBP9.25□□□□□ -0.93
SS18-211ENST00000578954 PCLOQ9Y6V0 5065 aa9.25□□□□□ -0.93
SS18-211ENST00000578954 LINC00846Q9NV44 126 aa9.22□□□□□ -0.93
SS18-211ENST00000578954 J3QL48 77 aa9.19□□□□□ -0.94
SS18-211ENST00000578954 K7ERU9 68 aa9.19□□□□□ -0.94
SS18-211ENST00000578954 Q6ZVQ6 151 aa9.17□□□□□ -0.94
SS18-211ENST00000578954 Q96NJ1 140 aa9.17□□□□□ -0.94
SS18-211ENST00000578954 LINC00472Q9H8W2 130 aa9.17□□□□□ -0.94
SS18-211ENST00000578954 NREPQ16612 68 aa9.16□□□□□ -0.94
SS18-211ENST00000578954 UBL5Q9BZL1 73 aa9.16□□□□□ -0.94
SS18-211ENST00000578954 C1orf195Q5TG92 126 aa9.15□□□□□ -0.94
SS18-211ENST00000578954 J3KT08 172 aa9.09□□□□□ -0.95
SS18-211ENST00000578954 CDIP1Q9H305 208 aa9.09□□□□□ -0.95
SS18-211ENST00000578954 LINC00643Q86TS7 51 aa9.07□□□□□ -0.96
SS18-211ENST00000578954 IGKV4-1P06312 121 aa9.06□□□□□ -0.96
SS18-211ENST00000578954 DEFB116Q30KQ4 102 aa9.06□□□□□ -0.96
SS18-211ENST00000578954 FP248Q71RG6 208 aaPredicted RBP9.06□□□□□ -0.96
SS18-211ENST00000578954 SIGMAR1Q99720 223 aa9.06□□□□□ -0.96
SS18-211ENST00000578954 RETNLBQ9BQ08 111 aa9.06□□□□□ -0.96
SS18-211ENST00000578954 BPY2O14599 106 aa9.05□□□□□ -0.96
SS18-211ENST00000578954 DSCR10P59022 87 aa9.04□□□□□ -0.96
SS18-211ENST00000578954 CXCL6P80162 114 aa9.04□□□□□ -0.96
SS18-211ENST00000578954 ATP5EP2Q5VTU8 51 aa9.04□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 66.5 ms