RNA–Protein interactions for RNA: ENST00000572253.5

CCDC40-207, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 3,962 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-207ENST00000572253 OTOGQ6ZRI0 2925 aa6.83□□□□□ -1.32
CCDC40-207ENST00000572253 A0A087WSZ3 146 aa6.83□□□□□ -1.32
CCDC40-207ENST00000572253 CDK2AP2O75956 126 aa6.83□□□□□ -1.32
CCDC40-207ENST00000572253 WFDC13Q8IUB5 93 aa6.83□□□□□ -1.32
CCDC40-207ENST00000572253 PRLHP81277 87 aa6.82□□□□□ -1.32
CCDC40-207ENST00000572253 ZCCHC13Q8WW36 166 aaKnown RBP6.82□□□□□ -1.32
CCDC40-207ENST00000572253 TRRAPQ9Y4A5 3859 aa6.82□□□□□ -1.32
CCDC40-207ENST00000572253 PRR15LQ9BU68 103 aa6.82□□□□□ -1.32
CCDC40-207ENST00000572253 C16orf90A8MZG2 172 aa6.81□□□□□ -1.32
CCDC40-207ENST00000572253 DEFB116Q30KQ4 102 aa6.81□□□□□ -1.32
CCDC40-207ENST00000572253 KRTAP24-1Q3LI83 254 aa6.81□□□□□ -1.32
CCDC40-207ENST00000572253 TENM3Q9P273 2699 aa6.81□□□□□ -1.32
CCDC40-207ENST00000572253 COL6A5A8TX70 2615 aa6.81□□□□□ -1.32
CCDC40-207ENST00000572253 IGLV8-61A0A075B6I0 122 aa6.8□□□□□ -1.32
CCDC40-207ENST00000572253 C1orf64Q8NEQ6 169 aa6.8□□□□□ -1.32
CCDC40-207ENST00000572253 A0A096LNI7 61 aa6.8□□□□□ -1.32
CCDC40-207ENST00000572253 PKD1L1Q8TDX9 2849 aa6.8□□□□□ -1.32
CCDC40-207ENST00000572253 A0A0G2JQZ4 141 aa6.8□□□□□ -1.32
CCDC40-207ENST00000572253 A0A1W2PNN7 141 aa6.8□□□□□ -1.32
CCDC40-207ENST00000572253 C14orf177Q52M58 125 aa6.78□□□□□ -1.32
CCDC40-207ENST00000572253 CYP4F30PQ9H0H9 118 aa6.78□□□□□ -1.32
CCDC40-207ENST00000572253 CNBPP62633 177 aaKnown RBP6.77□□□□□ -1.33
CCDC40-207ENST00000572253 LINC00208Q96KT6 92 aa6.76□□□□□ -1.33
CCDC40-207ENST00000572253 CASC2Q6XLA1 102 aa6.76□□□□□ -1.33
CCDC40-207ENST00000572253 Q1T7F1 81 aa6.76□□□□□ -1.33
CCDC40-207ENST00000572253 H3BPC8 53 aa6.75□□□□□ -1.33
CCDC40-207ENST00000572253 RPL37AP61513 92 aaKnown RBP6.75□□□□□ -1.33
CCDC40-207ENST00000572253 TRAV22A0A0B4J277 110 aa6.74□□□□□ -1.33
CCDC40-207ENST00000572253 B9D2Q9BPU9 175 aa6.74□□□□□ -1.33
CCDC40-207ENST00000572253 H0Y9P7 68 aa6.74□□□□□ -1.33
CCDC40-207ENST00000572253 CD164Q04900 197 aa6.74□□□□□ -1.33
CCDC40-207ENST00000572253 PRR15Q8IV56 129 aa6.73□□□□□ -1.33
CCDC40-207ENST00000572253 H0Y9J4 135 aa6.73□□□□□ -1.33
CCDC40-207ENST00000572253 PHF5AQ7RTV0 110 aaKnown RBP6.73□□□□□ -1.33
CCDC40-207ENST00000572253 A8MWP4 228 aa6.72□□□□□ -1.33
CCDC40-207ENST00000572253 SPRR1BP22528 89 aa6.72□□□□□ -1.33
CCDC40-207ENST00000572253 KRTAP29-1A8MX34 341 aaPredicted RBP6.71□□□□□ -1.34
CCDC40-207ENST00000572253 SPANXA2-OT1Q8N9U9 137 aa6.7□□□□□ -1.34
CCDC40-207ENST00000572253 K7EIL1 84 aa6.69□□□□□ -1.34
CCDC40-207ENST00000572253 CHTF8P0CG12 524 aa6.69□□□□□ -1.34
CCDC40-207ENST00000572253 KRTAP1-5Q9BYS1 174 aa6.69□□□□□ -1.34
CCDC40-207ENST00000572253 LINC00472Q9H8W2 130 aa6.68□□□□□ -1.34
CCDC40-207ENST00000572253 MDFIQ99750 246 aa6.67□□□□□ -1.34
CCDC40-207ENST00000572253 C4orf48Q5BLP8 95 aa6.67□□□□□ -1.34
CCDC40-207ENST00000572253 C9orf163Q8N9P6 203 aa6.65□□□□□ -1.34
CCDC40-207ENST00000572253 KRTAP11-1Q8IUC1 163 aa6.65□□□□□ -1.35
CCDC40-207ENST00000572253 A8MUN3 132 aa6.64□□□□□ -1.35
CCDC40-207ENST00000572253 LIMD2Q9BT23 127 aa6.63□□□□□ -1.35
CCDC40-207ENST00000572253 APLNQ9ULZ1 77 aa6.62□□□□□ -1.35
CCDC40-207ENST00000572253 MMP24-AS1A0A0U1RRL7 71 aa6.62□□□□□ -1.35
CCDC40-207ENST00000572253 TP53AIP1Q9HCN2 124 aa6.61□□□□□ -1.35
CCDC40-207ENST00000572253 IGLV9-49A0A0B4J1Y8 123 aa6.61□□□□□ -1.35
CCDC40-207ENST00000572253 MOBPQ13875 183 aa6.6□□□□□ -1.35
CCDC40-207ENST00000572253 ZNF706Q9Y5V0 76 aaPredicted RBP6.59□□□□□ -1.35
CCDC40-207ENST00000572253 DNAH1Q9P2D7 4330 aa6.59□□□□□ -1.35
CCDC40-207ENST00000572253 H3BS24 57 aa6.58□□□□□ -1.36
CCDC40-207ENST00000572253 NBDYA0A0U1RRE5 68 aa6.58□□□□□ -1.36
CCDC40-207ENST00000572253 PCOTHQ58A44 107 aa6.57□□□□□ -1.36
CCDC40-207ENST00000572253 Q8N9P0 234 aaPredicted RBP6.57□□□□□ -1.36
CCDC40-207ENST00000572253 ANK2Q01484 3957 aa6.57□□□□□ -1.36
CCDC40-207ENST00000572253 KRTAP13-1Q8IUC0 172 aa6.57□□□□□ -1.36
CCDC40-207ENST00000572253 IGLV7-46A0A075B6I9 117 aa6.57□□□□□ -1.36
CCDC40-207ENST00000572253 COA5Q86WW8 74 aa6.57□□□□□ -1.36
CCDC40-207ENST00000572253 C8orf17Q9NRJ1 99 aa6.56□□□□□ -1.36
CCDC40-207ENST00000572253 DNAH3Q8TD57 4116 aa6.56□□□□□ -1.36
CCDC40-207ENST00000572253 Q5VV11 94 aa6.56□□□□□ -1.36
CCDC40-207ENST00000572253 KTN1-AS1Q86SY8 53 aa6.56□□□□□ -1.36
CCDC40-207ENST00000572253 CMYA5Q8N3K9 4069 aa6.55□□□□□ -1.36
CCDC40-207ENST00000572253 IGHV6-1A0A0B4J1U7 121 aa6.55□□□□□ -1.36
CCDC40-207ENST00000572253 HUWE1Q7Z6Z7 4374 aaKnown RBP6.54□□□□□ -1.36
CCDC40-207ENST00000572253 FBN1P35555 2871 aaKnown RBP6.53□□□□□ -1.36
CCDC40-207ENST00000572253 STAB2Q8WWQ8 2551 aa6.53□□□□□ -1.36
CCDC40-207ENST00000572253 A0A1B0GVX0 72 aa6.53□□□□□ -1.36
CCDC40-207ENST00000572253 PANO1I0J062 215 aa6.53□□□□□ -1.36
CCDC40-207ENST00000572253 NUPR2A6NF83 97 aa6.52□□□□□ -1.37
CCDC40-207ENST00000572253 SPAG11AQ6PDA7 123 aa6.52□□□□□ -1.37
CCDC40-207ENST00000572253 SPACA4Q8TDM5 124 aa6.52□□□□□ -1.37
CCDC40-207ENST00000572253 Q96NJ1 140 aa6.52□□□□□ -1.37
CCDC40-207ENST00000572253 LINC00483Q53H64 154 aa6.52□□□□□ -1.37
CCDC40-207ENST00000572253 RBM12B-AS1Q9P1G2 102 aa6.51□□□□□ -1.37
CCDC40-207ENST00000572253 ASB16-AS1Q495Z4 193 aa6.51□□□□□ -1.37
CCDC40-207ENST00000572253 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP6.51□□□□□ -1.37
CCDC40-207ENST00000572253 Q6ZR54 194 aa6.5□□□□□ -1.37
CCDC40-207ENST00000572253 MRPL34Q9BQ48 92 aaKnown RBP6.5□□□□□ -1.37
CCDC40-207ENST00000572253 Q6ZRN7 208 aaPredicted RBP6.49□□□□□ -1.37
CCDC40-207ENST00000572253 RETNLBQ9BQ08 111 aa6.49□□□□□ -1.37
CCDC40-207ENST00000572253 K7ERS5 55 aa6.49□□□□□ -1.37
CCDC40-207ENST00000572253 Q75L30 129 aa6.49□□□□□ -1.37
CCDC40-207ENST00000572253 LOC101927531A0A1B0GV80 90 aa6.48□□□□□ -1.37
CCDC40-207ENST00000572253 LCA10Q71F78 164 aa6.48□□□□□ -1.37
CCDC40-207ENST00000572253 SRRM2Q9UQ35 2752 aaKnown RBP6.47□□□□□ -1.37
CCDC40-207ENST00000572253 WWC2-AS2Q96NR7 200 aa6.47□□□□□ -1.37
CCDC40-207ENST00000572253 C8orf87E5RJ46 101 aa6.47□□□□□ -1.37
CCDC40-207ENST00000572253 C7orf65Q6ZTY9 151 aa6.47□□□□□ -1.37
CCDC40-207ENST00000572253 DNAH10Q8IVF4 4471 aa6.46□□□□□ -1.37
CCDC40-207ENST00000572253 PSORS1C2Q9UIG4 136 aa6.46□□□□□ -1.37
CCDC40-207ENST00000572253 A0A087WTM6 91 aa6.46□□□□□ -1.38
CCDC40-207ENST00000572253 IGLV5-52A0A0A0MRZ9 124 aa6.46□□□□□ -1.38
CCDC40-207ENST00000572253 ZNF861PO60384 105 aa6.45□□□□□ -1.38
CCDC40-207ENST00000572253 ATP11AUNQ6ZP68 121 aa6.45□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms