RNA–Protein interactions for RNA: ENST00000570771.1

VPS53-209, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 366 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-209ENST00000570771 PSORS1C2Q9UIG4 136 aa3.97□□□□□ -1.77
VPS53-209ENST00000570771 SPCS1Q9Y6A9 102 aa3.97□□□□□ -1.77
VPS53-209ENST00000570771 LST1O00453 97 aa3.96□□□□□ -1.78
VPS53-209ENST00000570771 RPL37AP61513 92 aaKnown RBP3.96□□□□□ -1.78
VPS53-209ENST00000570771 OCIAD2Q56VL3 154 aa3.96□□□□□ -1.78
VPS53-209ENST00000570771 CLEC2BQ92478 149 aa3.96□□□□□ -1.78
VPS53-209ENST00000570771 K7EP34 96 aa3.95□□□□□ -1.78
VPS53-209ENST00000570771 TCL1BO95988 128 aa3.95□□□□□ -1.78
VPS53-209ENST00000570771 PLA2G1BP04054 148 aaKnown RBP3.95□□□□□ -1.78
VPS53-209ENST00000570771 IGLV7-43P04211 117 aa3.95□□□□□ -1.78
VPS53-209ENST00000570771 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP3.95□□□□□ -1.78
VPS53-209ENST00000570771 ZNF706Q9Y5V0 76 aaPredicted RBP3.95□□□□□ -1.78
VPS53-209ENST00000570771 ZNF861PO60384 105 aa3.94□□□□□ -1.78
VPS53-209ENST00000570771 PRLHP81277 87 aa3.94□□□□□ -1.78
VPS53-209ENST00000570771 Q5VSD8 79 aa3.94□□□□□ -1.78
VPS53-209ENST00000570771 Q8N1X5 172 aa3.94□□□□□ -1.78
VPS53-209ENST00000570771 PPDPFLQ8WWR9 84 aa3.94□□□□□ -1.78
VPS53-209ENST00000570771 HIGD2AQ9BW72 106 aa3.94□□□□□ -1.78
VPS53-209ENST00000570771 ORMDL1Q9P0S3 153 aa3.94□□□□□ -1.78
VPS53-209ENST00000570771 A0A1B0GV90 55 aa3.93□□□□□ -1.78
VPS53-209ENST00000570771 H3BMG7 143 aa3.93□□□□□ -1.78
VPS53-209ENST00000570771 Q6ZQY7 126 aa3.93□□□□□ -1.78
VPS53-209ENST00000570771 KRTAP13-1Q8IUC0 172 aa3.93□□□□□ -1.78
VPS53-209ENST00000570771 SMCR5Q8TEV8 140 aa3.93□□□□□ -1.78
VPS53-209ENST00000570771 FAM218AQ96MZ4 157 aa3.93□□□□□ -1.78
VPS53-209ENST00000570771 Q9BRP9 147 aa3.93□□□□□ -1.78
VPS53-209ENST00000570771 C9JAW5 83 aa3.92□□□□□ -1.78
VPS53-209ENST00000570771 H3BT86 120 aa3.92□□□□□ -1.78
VPS53-209ENST00000570771 TMEM256-PLSCR3K7ERE1 68 aa3.92□□□□□ -1.78
VPS53-209ENST00000570771 FLG2Q5D862 2391 aaPredicted RBP3.91□□□□□ -1.78
VPS53-209ENST00000570771 TEX49A0A1B0GTD5 131 aa3.91□□□□□ -1.78
VPS53-209ENST00000570771 F8W1H4 67 aa3.91□□□□□ -1.78
VPS53-209ENST00000570771 BAALC-AS2P0C853 105 aa3.91□□□□□ -1.78
VPS53-209ENST00000570771 UBE2V1Q13404 147 aa3.91□□□□□ -1.78
VPS53-209ENST00000570771 IGLV5-48A0A075B6I7 105 aa3.9□□□□□ -1.79
VPS53-209ENST00000570771 F8WEM9 126 aa3.9□□□□□ -1.79
VPS53-209ENST00000570771 SPINK6Q6UWN8 80 aa3.9□□□□□ -1.79
VPS53-209ENST00000570771 ANKRD29Q8N6D5 301 aa3.9□□□□□ -1.79
VPS53-209ENST00000570771 HMCN2Q8NDA2 5059 aa3.89□□□□□ -1.79
VPS53-209ENST00000570771 ERC2-IT1O76042 136 aa3.89□□□□□ -1.79
VPS53-209ENST00000570771 DEFB105AQ8NG35 78 aa3.89□□□□□ -1.79
VPS53-209ENST00000570771 LAMTOR3Q9UHA4 124 aa3.89□□□□□ -1.79
VPS53-209ENST00000570771 JMJD7-PLA2G4BH0Y9G9 81 aa3.88□□□□□ -1.79
VPS53-209ENST00000570771 SPRR1BP22528 89 aa3.88□□□□□ -1.79
VPS53-209ENST00000570771 C21orf62-AS1Q17RA5 79 aa3.88□□□□□ -1.79
VPS53-209ENST00000570771 GAGE2AQ6NT46 116 aa3.88□□□□□ -1.79
VPS53-209ENST00000570771 LINC01600Q96MT4 127 aa3.88□□□□□ -1.79
VPS53-209ENST00000570771 SPRR4Q96PI1 79 aa3.88□□□□□ -1.79
VPS53-209ENST00000570771 LINC00483Q53H64 154 aa3.87□□□□□ -1.79
VPS53-209ENST00000570771 Q8N377 158 aa3.87□□□□□ -1.79
VPS53-209ENST00000570771 ST20-AS1Q8NBB2 130 aa3.87□□□□□ -1.79
VPS53-209ENST00000570771 NDUFV3P56181 108 aaKnown RBP3.86□□□□□ -1.79
VPS53-209ENST00000570771 LINC01547P58512 204 aaPredicted RBP3.86□□□□□ -1.79
VPS53-209ENST00000570771 FAM229BQ4G0N7 80 aa3.86□□□□□ -1.79
VPS53-209ENST00000570771 MTURNQ8N3F0 131 aa3.86□□□□□ -1.79
VPS53-209ENST00000570771 PRO0461Q9UI25 63 aa3.86□□□□□ -1.79
VPS53-209ENST00000570771 PDE6GP18545 87 aa3.85□□□□□ -1.79
VPS53-209ENST00000570771 RBM3P98179 157 aaKnown RBP3.85□□□□□ -1.79
VPS53-209ENST00000570771 TEN1Q86WV5 123 aa3.85□□□□□ -1.79
VPS53-209ENST00000570771 DSCR8Q96T75 97 aa3.85□□□□□ -1.79
VPS53-209ENST00000570771 KRTAP1-4P0C5Y4 121 aa3.84□□□□□ -1.79
VPS53-209ENST00000570771 MT1HL1P0DM35 61 aa3.84□□□□□ -1.79
VPS53-209ENST00000570771 CRYGAP11844 174 aa3.84□□□□□ -1.79
VPS53-209ENST00000570771 C9orf153Q5TBE3 101 aa3.84□□□□□ -1.79
VPS53-209ENST00000570771 Q6JHZ5 121 aa3.84□□□□□ -1.79
VPS53-209ENST00000570771 IGLV8-61A0A075B6I0 122 aa3.83□□□□□ -1.8
VPS53-209ENST00000570771 ETDBQ3ZM63 59 aa3.83□□□□□ -1.8
VPS53-209ENST00000570771 SSBP3-AS1Q7Z2R9 100 aa3.83□□□□□ -1.8
VPS53-209ENST00000570771 SMIM29Q86T20 159 aa3.83□□□□□ -1.8
VPS53-209ENST00000570771 Q8NBF4 154 aa3.83□□□□□ -1.8
VPS53-209ENST00000570771 ANAPC11Q9NYG5 84 aa3.83□□□□□ -1.8
VPS53-209ENST00000570771 IGLV9-49A0A0B4J1Y8 123 aa3.82□□□□□ -1.8
VPS53-209ENST00000570771 J3QR89 54 aa3.82□□□□□ -1.8
VPS53-209ENST00000570771 C3orf22Q8N5N4 141 aa3.82□□□□□ -1.8
VPS53-209ENST00000570771 OBSCN-AS1Q96MR7 158 aa3.82□□□□□ -1.8
VPS53-209ENST00000570771 LOC110117498A0A087WWA1 95 aa3.81□□□□□ -1.8
VPS53-209ENST00000570771 TRBV7-4A0A0J9YYF1 115 aa3.81□□□□□ -1.8
VPS53-209ENST00000570771 A0A1B0GV72 72 aa3.81□□□□□ -1.8
VPS53-209ENST00000570771 MOBPQ13875 183 aa3.81□□□□□ -1.8
VPS53-209ENST00000570771 C14orf132Q9NPU4 83 aa3.81□□□□□ -1.8
VPS53-209ENST00000570771 A0A087X002 238 aa3.8□□□□□ -1.8
VPS53-209ENST00000570771 A0A1B0GW54 56 aa3.8□□□□□ -1.8
VPS53-209ENST00000570771 TYMSOSQ8TAI1 123 aa3.8□□□□□ -1.8
VPS53-209ENST00000570771 DMBT1Q9UGM3 2413 aaPredicted RBP3.79□□□□□ -1.8
VPS53-209ENST00000570771 CCKP06307 115 aa3.79□□□□□ -1.8
VPS53-209ENST00000570771 KRTAP13-2Q52LG2 175 aa3.79□□□□□ -1.8
VPS53-209ENST00000570771 Q6ZQT0 140 aa3.79□□□□□ -1.8
VPS53-209ENST00000570771 ACYP1P07311 99 aa3.78□□□□□ -1.8
VPS53-209ENST00000570771 CD164Q04900 197 aa3.78□□□□□ -1.8
VPS53-209ENST00000570771 SPAG11AQ6PDA7 123 aa3.78□□□□□ -1.8
VPS53-209ENST00000570771 IGFL1Q6UW32 110 aa3.78□□□□□ -1.8
VPS53-209ENST00000570771 PRR26Q8N8Z3 221 aa3.78□□□□□ -1.8
VPS53-209ENST00000570771 VPS25Q9BRG1 176 aa3.78□□□□□ -1.8
VPS53-209ENST00000570771 LPAP08519 4548 aa3.77□□□□□ -1.81
VPS53-209ENST00000570771 K7ERU9 68 aa3.77□□□□□ -1.81
VPS53-209ENST00000570771 OXTP01178 125 aa3.77□□□□□ -1.81
VPS53-209ENST00000570771 Q6Q795 121 aa3.77□□□□□ -1.81
VPS53-209ENST00000570771 FAM240AA0A1B0GVK7 77 aa3.76□□□□□ -1.81
VPS53-209ENST00000570771 KRTAP29-1A8MX34 341 aaPredicted RBP3.76□□□□□ -1.81
VPS53-209ENST00000570771 KRTAP10-8P60410 259 aa3.76□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms