RNA–Protein interactions for RNA: ENST00000568539.1

SF3B3-212, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 555 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-212ENST00000568539 CLEC2BQ92478 149 aa5.06□□□□□ -1.6
SF3B3-212ENST00000568539 ZNF706Q9Y5V0 76 aaPredicted RBP5.06□□□□□ -1.6
SF3B3-212ENST00000568539 A0A1B0GX51 115 aa5.05□□□□□ -1.6
SF3B3-212ENST00000568539 SCGB1C2P0DMR2 95 aa5.05□□□□□ -1.6
SF3B3-212ENST00000568539 KRTAP9-9Q9BYP9 154 aa5.05□□□□□ -1.6
SF3B3-212ENST00000568539 KRTAP9-4Q9BYQ2 154 aa5.05□□□□□ -1.6
SF3B3-212ENST00000568539 IGLV5-48A0A075B6I7 105 aa5.04□□□□□ -1.6
SF3B3-212ENST00000568539 LINC00483Q53H64 154 aa5.04□□□□□ -1.6
SF3B3-212ENST00000568539 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP5.04□□□□□ -1.6
SF3B3-212ENST00000568539 Q6ZQY7 126 aa5.04□□□□□ -1.6
SF3B3-212ENST00000568539 KRTAP4-12Q9BQ66 201 aa5.04□□□□□ -1.6
SF3B3-212ENST00000568539 ANAPC11Q9NYG5 84 aa5.04□□□□□ -1.6
SF3B3-212ENST00000568539 A0A1W2PPM0 123 aa5.03□□□□□ -1.6
SF3B3-212ENST00000568539 LST1O00453 97 aa5.03□□□□□ -1.6
SF3B3-212ENST00000568539 SNCGO76070 127 aa5.03□□□□□ -1.6
SF3B3-212ENST00000568539 SPRR1BP22528 89 aa5.03□□□□□ -1.6
SF3B3-212ENST00000568539 LINC01547P58512 204 aaPredicted RBP5.03□□□□□ -1.6
SF3B3-212ENST00000568539 LYRM7Q5U5X0 104 aa5.03□□□□□ -1.6
SF3B3-212ENST00000568539 GAGE2AQ6NT46 116 aa5.03□□□□□ -1.6
SF3B3-212ENST00000568539 A0A1B0GV90 55 aa5.02□□□□□ -1.61
SF3B3-212ENST00000568539 TCL1BO95988 128 aa5.02□□□□□ -1.61
SF3B3-212ENST00000568539 TRACP01848 142 aa5.02□□□□□ -1.61
SF3B3-212ENST00000568539 FAM229BQ4G0N7 80 aa5.02□□□□□ -1.61
SF3B3-212ENST00000568539 Q8N377 158 aa5.02□□□□□ -1.61
SF3B3-212ENST00000568539 DEFB105AQ8NG35 78 aa5.02□□□□□ -1.61
SF3B3-212ENST00000568539 LINC01600Q96MT4 127 aa5.02□□□□□ -1.61
SF3B3-212ENST00000568539 TRBV20-1A0A075B6N2 111 aa5.01□□□□□ -1.61
SF3B3-212ENST00000568539 A0A087X002 238 aa5.01□□□□□ -1.61
SF3B3-212ENST00000568539 TEX49A0A1B0GTD5 131 aa5.01□□□□□ -1.61
SF3B3-212ENST00000568539 FABP2P12104 132 aa5.01□□□□□ -1.61
SF3B3-212ENST00000568539 ATXN8Q156A1 80 aa5.01□□□□□ -1.61
SF3B3-212ENST00000568539 LRP1Q07954 4544 aaKnown RBP5□□□□□ -1.61
SF3B3-212ENST00000568539 DNAL4O96015 105 aa5□□□□□ -1.61
SF3B3-212ENST00000568539 OXTP01178 125 aa5□□□□□ -1.61
SF3B3-212ENST00000568539 CRYGAP11844 174 aa5□□□□□ -1.61
SF3B3-212ENST00000568539 OCIAD2Q56VL3 154 aa5□□□□□ -1.61
SF3B3-212ENST00000568539 SMIM29Q86T20 159 aa5□□□□□ -1.61
SF3B3-212ENST00000568539 PRR26Q8N8Z3 221 aa5□□□□□ -1.61
SF3B3-212ENST00000568539 PPDPFLQ8WWR9 84 aa5□□□□□ -1.61
SF3B3-212ENST00000568539 KRTAP29-1A8MX34 341 aaPredicted RBP4.99□□□□□ -1.61
SF3B3-212ENST00000568539 KRTAP13-2Q52LG2 175 aa4.99□□□□□ -1.61
SF3B3-212ENST00000568539 ORMDL1Q9P0S3 153 aa4.99□□□□□ -1.61
SF3B3-212ENST00000568539 FAT3Q8TDW7 4589 aa4.98□□□□□ -1.61
SF3B3-212ENST00000568539 PKHD1L1Q86WI1 4243 aa4.98□□□□□ -1.61
SF3B3-212ENST00000568539 KRTAP10-8P60410 259 aa4.98□□□□□ -1.61
SF3B3-212ENST00000568539 C3orf22Q8N5N4 141 aa4.98□□□□□ -1.61
SF3B3-212ENST00000568539 LAMTOR3Q9UHA4 124 aa4.98□□□□□ -1.61
SF3B3-212ENST00000568539 SPCS1Q9Y6A9 102 aa4.98□□□□□ -1.61
SF3B3-212ENST00000568539 IGLV9-49A0A0B4J1Y8 123 aa4.97□□□□□ -1.61
SF3B3-212ENST00000568539 MT1HL1P0DM35 61 aa4.97□□□□□ -1.61
SF3B3-212ENST00000568539 H3BMG7 143 aa4.96□□□□□ -1.62
SF3B3-212ENST00000568539 H3BQ85 93 aa4.96□□□□□ -1.62
SF3B3-212ENST00000568539 K7EP34 96 aa4.96□□□□□ -1.62
SF3B3-212ENST00000568539 MOBPQ13875 183 aa4.96□□□□□ -1.62
SF3B3-212ENST00000568539 TYMSOSQ8TAI1 123 aa4.96□□□□□ -1.62
SF3B3-212ENST00000568539 C9JAW5 83 aa4.95□□□□□ -1.62
SF3B3-212ENST00000568539 TMEM256-PLSCR3K7ERE1 68 aa4.95□□□□□ -1.62
SF3B3-212ENST00000568539 BAALC-AS2P0C853 105 aa4.95□□□□□ -1.62
SF3B3-212ENST00000568539 NDUFV3P56181 108 aaKnown RBP4.95□□□□□ -1.62
SF3B3-212ENST00000568539 IGLV8-61A0A075B6I0 122 aa4.94□□□□□ -1.62
SF3B3-212ENST00000568539 UBE2V1Q13404 147 aa4.94□□□□□ -1.62
SF3B3-212ENST00000568539 C9orf153Q5TBE3 101 aa4.94□□□□□ -1.62
SF3B3-212ENST00000568539 SSBP3-AS1Q7Z2R9 100 aa4.94□□□□□ -1.62
SF3B3-212ENST00000568539 Q8NBF4 154 aa4.94□□□□□ -1.62
SF3B3-212ENST00000568539 LRP2P98164 4655 aa4.94□□□□□ -1.62
SF3B3-212ENST00000568539 F8WEM9 126 aa4.93□□□□□ -1.62
SF3B3-212ENST00000568539 GTF2H5Q6ZYL4 71 aa4.93□□□□□ -1.62
SF3B3-212ENST00000568539 H3BT86 120 aa4.92□□□□□ -1.62
SF3B3-212ENST00000568539 MTURNQ8N3F0 131 aa4.92□□□□□ -1.62
SF3B3-212ENST00000568539 ANKRD29Q8N6D5 301 aa4.92□□□□□ -1.62
SF3B3-212ENST00000568539 KRTAP4-7Q9BYR0 210 aa4.92□□□□□ -1.62
SF3B3-212ENST00000568539 PRO0461Q9UI25 63 aa4.91□□□□□ -1.62
SF3B3-212ENST00000568539 A0A0G2JQZ4 141 aa4.9□□□□□ -1.63
SF3B3-212ENST00000568539 Q6JHZ5 121 aa4.9□□□□□ -1.63
SF3B3-212ENST00000568539 IGFL1Q6UW32 110 aa4.9□□□□□ -1.63
SF3B3-212ENST00000568539 LINC00304Q8N9R0 145 aa4.9□□□□□ -1.63
SF3B3-212ENST00000568539 A0A1B0GV72 72 aa4.89□□□□□ -1.63
SF3B3-212ENST00000568539 KRTAP9-7A8MTY7 169 aa4.88□□□□□ -1.63
SF3B3-212ENST00000568539 JMJD7-PLA2G4BH0Y9G9 81 aa4.88□□□□□ -1.63
SF3B3-212ENST00000568539 SPAG11AQ6PDA7 123 aa4.88□□□□□ -1.63
SF3B3-212ENST00000568539 OBSCN-AS1Q96MR7 158 aa4.88□□□□□ -1.63
SF3B3-212ENST00000568539 TRBV7-4A0A0J9YYF1 115 aa4.87□□□□□ -1.63
SF3B3-212ENST00000568539 F8W1H4 67 aa4.87□□□□□ -1.63
SF3B3-212ENST00000568539 SPINK1P00995 79 aa4.87□□□□□ -1.63
SF3B3-212ENST00000568539 RBM3P98179 157 aaKnown RBP4.87□□□□□ -1.63
SF3B3-212ENST00000568539 CD164Q04900 197 aa4.87□□□□□ -1.63
SF3B3-212ENST00000568539 LCE4AQ5TA78 99 aa4.87□□□□□ -1.63
SF3B3-212ENST00000568539 HRCT1Q6UXD1 115 aa4.86□□□□□ -1.63
SF3B3-212ENST00000568539 A0A1W2PNM2 257 aa4.85□□□□□ -1.63
SF3B3-212ENST00000568539 RPS29P62273 56 aaKnown RBP4.85□□□□□ -1.63
SF3B3-212ENST00000568539 Q6Q795 121 aa4.85□□□□□ -1.63
SF3B3-212ENST00000568539 DSCR8Q96T75 97 aa4.85□□□□□ -1.63
SF3B3-212ENST00000568539 LOC110117498A0A087WWA1 95 aa4.84□□□□□ -1.63
SF3B3-212ENST00000568539 SCGB1A1P11684 91 aa4.84□□□□□ -1.63
SF3B3-212ENST00000568539 TEN1Q86WV5 123 aa4.84□□□□□ -1.63
SF3B3-212ENST00000568539 C14orf132Q9NPU4 83 aa4.84□□□□□ -1.63
SF3B3-212ENST00000568539 TNXBP22105 4242 aa4.84□□□□□ -1.64
SF3B3-212ENST00000568539 FAT4Q6V0I7 4981 aa4.83□□□□□ -1.64
SF3B3-212ENST00000568539 TRBV7-7A0A0K0K1E9 115 aa4.83□□□□□ -1.64
SF3B3-212ENST00000568539 CCKP06307 115 aa4.83□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms