RNA–Protein interactions for RNA: ENST00000568292.1

CDH3-207, Transcript of cadherin 3, humanhuman

TSL 2

Gene CDH3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-207ENST00000568292 SMCR5Q8TEV8 140 aa6.23□□□□□ -1.41
CDH3-207ENST00000568292 ZNF625Q96I27 306 aaPredicted RBP6.23□□□□□ -1.41
CDH3-207ENST00000568292 RPL37AP8A6NKH3 93 aa6.22□□□□□ -1.41
CDH3-207ENST00000568292 ATP5EP2Q5VTU8 51 aa6.22□□□□□ -1.41
CDH3-207ENST00000568292 LITAFQ99732 161 aa6.22□□□□□ -1.41
CDH3-207ENST00000568292 LINC00158P58513 81 aa6.21□□□□□ -1.42
CDH3-207ENST00000568292 SND1-IT1Q9HBX3 110 aa6.21□□□□□ -1.42
CDH3-207ENST00000568292 IGLV1-50A0A075B6I6 118 aa6.2□□□□□ -1.42
CDH3-207ENST00000568292 SMIM26A0A096LP01 95 aa6.2□□□□□ -1.42
CDH3-207ENST00000568292 RPL28P46779 137 aaKnown RBP6.2□□□□□ -1.42
CDH3-207ENST00000568292 ATP5EP56381 51 aaPredicted RBP6.2□□□□□ -1.42
CDH3-207ENST00000568292 PRR26Q8N8Z3 221 aa6.2□□□□□ -1.42
CDH3-207ENST00000568292 CLEC2BQ92478 149 aa6.2□□□□□ -1.42
CDH3-207ENST00000568292 LRP1Q07954 4544 aaKnown RBP6.19□□□□□ -1.42
CDH3-207ENST00000568292 BAALC-AS2P0C853 105 aa6.19□□□□□ -1.42
CDH3-207ENST00000568292 VPREB1P12018 145 aa6.19□□□□□ -1.42
CDH3-207ENST00000568292 SEC61GP60059 68 aa6.19□□□□□ -1.42
CDH3-207ENST00000568292 V9GYY9 64 aa6.19□□□□□ -1.42
CDH3-207ENST00000568292 HERC1Q15751 4861 aa6.18□□□□□ -1.42
CDH3-207ENST00000568292 TRBV10-3A0A0K0K1G6 114 aa6.18□□□□□ -1.42
CDH3-207ENST00000568292 FAM236DA0A1B0GTK5 79 aa6.18□□□□□ -1.42
CDH3-207ENST00000568292 KRTAP1-4P0C5Y4 121 aa6.18□□□□□ -1.42
CDH3-207ENST00000568292 FAM236CP0DP71 79 aa6.18□□□□□ -1.42
CDH3-207ENST00000568292 DSCR8Q96T75 97 aa6.18□□□□□ -1.42
CDH3-207ENST00000568292 NDUFA12Q9UI09 145 aa6.18□□□□□ -1.42
CDH3-207ENST00000568292 A0A0U1RRA0 63 aa6.17□□□□□ -1.42
CDH3-207ENST00000568292 DNAL4O96015 105 aa6.17□□□□□ -1.42
CDH3-207ENST00000568292 UBE2AP49459 152 aa6.17□□□□□ -1.42
CDH3-207ENST00000568292 FAT3Q8TDW7 4589 aa6.17□□□□□ -1.42
CDH3-207ENST00000568292 IGKV2-28A0A075B6P5 120 aa6.16□□□□□ -1.42
CDH3-207ENST00000568292 IGKV2D-28P01615 120 aa6.16□□□□□ -1.42
CDH3-207ENST00000568292 LCE2CQ5TA81 110 aa6.16□□□□□ -1.42
CDH3-207ENST00000568292 M0R378 163 aa6.15□□□□□ -1.42
CDH3-207ENST00000568292 NDUFC1O43677 76 aa6.15□□□□□ -1.42
CDH3-207ENST00000568292 OBSCN-AS1Q96MR7 158 aa6.15□□□□□ -1.42
CDH3-207ENST00000568292 LAMTOR3Q9UHA4 124 aa6.15□□□□□ -1.42
CDH3-207ENST00000568292 H0YGX0 51 aa6.13□□□□□ -1.43
CDH3-207ENST00000568292 C1orf195Q5TG92 126 aa6.13□□□□□ -1.43
CDH3-207ENST00000568292 FAM19A1Q7Z5A9 133 aa6.13□□□□□ -1.43
CDH3-207ENST00000568292 MIR7-3HGQ8N6C7 128 aa6.13□□□□□ -1.43
CDH3-207ENST00000568292 Q8NDZ9 215 aa6.13□□□□□ -1.43
CDH3-207ENST00000568292 TRAV13-2A0A0B4J235 113 aa6.12□□□□□ -1.43
CDH3-207ENST00000568292 ADAMTSL4-AS1Q5T5F5 129 aa6.12□□□□□ -1.43
CDH3-207ENST00000568292 KRTAP13-1Q8IUC0 172 aa6.12□□□□□ -1.43
CDH3-207ENST00000568292 TRAV7A0A075B6U4 112 aa6.11□□□□□ -1.43
CDH3-207ENST00000568292 LINC00308Q8TCZ7 52 aa6.11□□□□□ -1.43
CDH3-207ENST00000568292 CYSTM1Q9H1C7 97 aa6.11□□□□□ -1.43
CDH3-207ENST00000568292 GHRHP01286 108 aa6.1□□□□□ -1.43
CDH3-207ENST00000568292 TYMSOSQ8TAI1 123 aa6.1□□□□□ -1.43
CDH3-207ENST00000568292 PRLHP81277 87 aa6.09□□□□□ -1.43
CDH3-207ENST00000568292 KLKP1Q107X0 134 aa6.09□□□□□ -1.43
CDH3-207ENST00000568292 ANAPC11Q9NYG5 84 aa6.09□□□□□ -1.43
CDH3-207ENST00000568292 NCR3O14931 201 aa6.08□□□□□ -1.44
CDH3-207ENST00000568292 CCKP06307 115 aa6.08□□□□□ -1.44
CDH3-207ENST00000568292 FAM229BQ4G0N7 80 aa6.08□□□□□ -1.44
CDH3-207ENST00000568292 A0A087X002 238 aa6.07□□□□□ -1.44
CDH3-207ENST00000568292 IGKV3D-7A0A0C4DH55 119 aa6.07□□□□□ -1.44
CDH3-207ENST00000568292 JMJD7-PLA2G4BH0Y9G9 81 aa6.07□□□□□ -1.44
CDH3-207ENST00000568292 PRYO14603 147 aa6.07□□□□□ -1.44
CDH3-207ENST00000568292 KCNQ1DNQ9H478 68 aa6.07□□□□□ -1.44
CDH3-207ENST00000568292 H7BZZ5 65 aa6.06□□□□□ -1.44
CDH3-207ENST00000568292 HIGD2AQ9BW72 106 aa6.06□□□□□ -1.44
CDH3-207ENST00000568292 LINC00846Q9NV44 126 aa6.06□□□□□ -1.44
CDH3-207ENST00000568292 ETDCA0A1B0GVM5 59 aa6.05□□□□□ -1.44
CDH3-207ENST00000568292 LINC00337Q8N6G1 96 aa6.05□□□□□ -1.44
CDH3-207ENST00000568292 TNXBP22105 4242 aa6.04□□□□□ -1.44
CDH3-207ENST00000568292 SPRR1AP35321 89 aa6.04□□□□□ -1.44
CDH3-207ENST00000568292 PRR4Q16378 134 aa6.04□□□□□ -1.44
CDH3-207ENST00000568292 KRTAP13-2Q52LG2 175 aa6.04□□□□□ -1.44
CDH3-207ENST00000568292 C20orf197Q8N268 126 aa6.04□□□□□ -1.44
CDH3-207ENST00000568292 ZNF706Q9Y5V0 76 aaPredicted RBP6.04□□□□□ -1.44
CDH3-207ENST00000568292 ERC2-IT1O76042 136 aa6.03□□□□□ -1.44
CDH3-207ENST00000568292 UBL5Q9BZL1 73 aa6.03□□□□□ -1.44
CDH3-207ENST00000568292 KRTAP4-16G5E9R7 235 aaPredicted RBP6.02□□□□□ -1.45
CDH3-207ENST00000568292 FP248Q71RG6 208 aaPredicted RBP6.02□□□□□ -1.45
CDH3-207ENST00000568292 SPRR4Q96PI1 79 aa6.02□□□□□ -1.45
CDH3-207ENST00000568292 C14orf132Q9NPU4 83 aa6.02□□□□□ -1.45
CDH3-207ENST00000568292 A0A087WVE0 104 aa6.01□□□□□ -1.45
CDH3-207ENST00000568292 H3BQ85 93 aa6.01□□□□□ -1.45
CDH3-207ENST00000568292 LORP23490 312 aaPredicted RBP6.01□□□□□ -1.45
CDH3-207ENST00000568292 LINC00304Q8N9R0 145 aa6.01□□□□□ -1.45
CDH3-207ENST00000568292 FAM218AQ96MZ4 157 aa6.01□□□□□ -1.45
CDH3-207ENST00000568292 ORMDL1Q9P0S3 153 aa6.01□□□□□ -1.45
CDH3-207ENST00000568292 TRBV7-6A0A0J9YX20 115 aa6□□□□□ -1.45
CDH3-207ENST00000568292 IGLV6-57P01721 117 aa6□□□□□ -1.45
CDH3-207ENST00000568292 SOSTDC1Q6X4U4 206 aa6□□□□□ -1.45
CDH3-207ENST00000568292 BRK1Q8WUW1 75 aa6□□□□□ -1.45
CDH3-207ENST00000568292 RBM3P98179 157 aaKnown RBP5.99□□□□□ -1.45
CDH3-207ENST00000568292 PRR15Q8IV56 129 aa5.99□□□□□ -1.45
CDH3-207ENST00000568292 HMCN2Q8NDA2 5059 aa5.99□□□□□ -1.45
CDH3-207ENST00000568292 TRAV23DV6A0A075B6W5 121 aa5.98□□□□□ -1.45
CDH3-207ENST00000568292 TMEM256-PLSCR3K7ERE1 68 aa5.98□□□□□ -1.45
CDH3-207ENST00000568292 PDE6GP18545 87 aa5.98□□□□□ -1.45
CDH3-207ENST00000568292 C4orf48Q5BLP8 95 aa5.98□□□□□ -1.45
CDH3-207ENST00000568292 SPAG11AQ6PDA7 123 aa5.98□□□□□ -1.45
CDH3-207ENST00000568292 CXCL6P80162 114 aa5.97□□□□□ -1.45
CDH3-207ENST00000568292 PMAIP1Q13794 54 aa5.97□□□□□ -1.45
CDH3-207ENST00000568292 LOC100996750A0A140TA64 210 aa5.96□□□□□ -1.46
CDH3-207ENST00000568292 F8WEM9 126 aa5.96□□□□□ -1.46
CDH3-207ENST00000568292 ZNF73O43830 326 aaPredicted RBP5.96□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 60 ms