RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 VAMP3Q15836 100 aa8.02□□□□□ -1.13
CLN3-213ENST00000565047 PCOTHQ58A44 107 aa8.02□□□□□ -1.13
CLN3-213ENST00000565047 Q6ZQY7 126 aa8.02□□□□□ -1.13
CLN3-213ENST00000565047 LOC105371267A0A1B0GV96 52 aa8□□□□□ -1.13
CLN3-213ENST00000565047 PYY3Q5JQD4 70 aa7.99□□□□□ -1.13
CLN3-213ENST00000565047 HIST1H4GQ99525 98 aa7.98□□□□□ -1.13
CLN3-213ENST00000565047 C12orf57Q99622 126 aa7.98□□□□□ -1.13
CLN3-213ENST00000565047 CFC1BP0CG36 223 aa7.97□□□□□ -1.13
CLN3-213ENST00000565047 CFC1P0CG37 223 aa7.97□□□□□ -1.13
CLN3-213ENST00000565047 IGFL1Q6UW32 110 aa7.97□□□□□ -1.13
CLN3-213ENST00000565047 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP7.97□□□□□ -1.13
CLN3-213ENST00000565047 OCIAD2Q56VL3 154 aa7.96□□□□□ -1.14
CLN3-213ENST00000565047 BVES-AS1Q5T3Y7 98 aa7.95□□□□□ -1.14
CLN3-213ENST00000565047 Q6JHZ5 121 aa7.95□□□□□ -1.14
CLN3-213ENST00000565047 TRBV7-7A0A0K0K1E9 115 aa7.94□□□□□ -1.14
CLN3-213ENST00000565047 TCL1BO95988 128 aa7.94□□□□□ -1.14
CLN3-213ENST00000565047 RPL37P61927 97 aaKnown RBP7.94□□□□□ -1.14
CLN3-213ENST00000565047 C2orf91Q6ZV80 131 aa7.94□□□□□ -1.14
CLN3-213ENST00000565047 PPDPFLQ8WWR9 84 aa7.94□□□□□ -1.14
CLN3-213ENST00000565047 CLEC2BQ92478 149 aa7.94□□□□□ -1.14
CLN3-213ENST00000565047 C14orf144Q96I85 54 aa7.94□□□□□ -1.14
CLN3-213ENST00000565047 HIGD1BQ9P298 99 aa7.94□□□□□ -1.14
CLN3-213ENST00000565047 F8WEM9 126 aa7.93□□□□□ -1.14
CLN3-213ENST00000565047 MT1HP80294 61 aa7.92□□□□□ -1.14
CLN3-213ENST00000565047 PAM16Q9Y3D7 125 aa7.92□□□□□ -1.14
CLN3-213ENST00000565047 SPATA45Q537H7 98 aa7.91□□□□□ -1.14
CLN3-213ENST00000565047 VAMP8Q9BV40 100 aa7.91□□□□□ -1.14
CLN3-213ENST00000565047 A0A0B4J2C4 111 aa7.9□□□□□ -1.14
CLN3-213ENST00000565047 LCE2DQ5TA82 110 aaPredicted RBP7.9□□□□□ -1.14
CLN3-213ENST00000565047 FAM218AQ96MZ4 157 aa7.9□□□□□ -1.14
CLN3-213ENST00000565047 FLGP20930 4061 aaPredicted RBP7.9□□□□□ -1.15
CLN3-213ENST00000565047 H3BUT2 72 aa7.87□□□□□ -1.15
CLN3-213ENST00000565047 FSIP2Q5CZC0 6907 aa7.87□□□□□ -1.15
CLN3-213ENST00000565047 H0YGX0 51 aa7.86□□□□□ -1.15
CLN3-213ENST00000565047 Q6Q795 121 aa7.86□□□□□ -1.15
CLN3-213ENST00000565047 SNHG12Q9BXW3 62 aa7.86□□□□□ -1.15
CLN3-213ENST00000565047 SMIM6P0DI80 62 aa7.85□□□□□ -1.15
CLN3-213ENST00000565047 RAB37Q96AX2 223 aa7.85□□□□□ -1.15
CLN3-213ENST00000565047 CEND1Q8N111 149 aa7.84□□□□□ -1.15
CLN3-213ENST00000565047 FXYD2P54710 66 aa7.82□□□□□ -1.16
CLN3-213ENST00000565047 A0A1B0GX51 115 aa7.81□□□□□ -1.16
CLN3-213ENST00000565047 NDUFV3P56181 108 aaKnown RBP7.81□□□□□ -1.16
CLN3-213ENST00000565047 PRO1854Q9UHT4 67 aa7.81□□□□□ -1.16
CLN3-213ENST00000565047 LORP23490 312 aaPredicted RBP7.8□□□□□ -1.16
CLN3-213ENST00000565047 Q75L30 129 aa7.8□□□□□ -1.16
CLN3-213ENST00000565047 OBSCN-AS1Q96MR7 158 aa7.8□□□□□ -1.16
CLN3-213ENST00000565047 LST1O00453 97 aa7.79□□□□□ -1.16
CLN3-213ENST00000565047 TEN1Q86WV5 123 aa7.79□□□□□ -1.16
CLN3-213ENST00000565047 TRIAP1O43715 76 aa7.78□□□□□ -1.16
CLN3-213ENST00000565047 Q96NJ1 140 aa7.78□□□□□ -1.16
CLN3-213ENST00000565047 TMEM238LA0A1B0GVL6 79 aa7.76□□□□□ -1.17
CLN3-213ENST00000565047 A6NJY4 79 aa7.76□□□□□ -1.17
CLN3-213ENST00000565047 SNCGO76070 127 aa7.76□□□□□ -1.17
CLN3-213ENST00000565047 KRTAP10-6P60371 365 aaPredicted RBP7.76□□□□□ -1.17
CLN3-213ENST00000565047 A0A1W2PNM2 257 aa7.75□□□□□ -1.17
CLN3-213ENST00000565047 H3BMG7 143 aa7.75□□□□□ -1.17
CLN3-213ENST00000565047 UQCR10Q9UDW1 63 aa7.75□□□□□ -1.17
CLN3-213ENST00000565047 A0A087WSZ3 146 aa7.74□□□□□ -1.17
CLN3-213ENST00000565047 SS18L2Q9UHA2 77 aa7.74□□□□□ -1.17
CLN3-213ENST00000565047 C20orf166-AS1Q96NR2 134 aa7.73□□□□□ -1.17
CLN3-213ENST00000565047 FABP2P12104 132 aa7.72□□□□□ -1.17
CLN3-213ENST00000565047 HSD52Q0P140 79 aa7.72□□□□□ -1.17
CLN3-213ENST00000565047 A8MUU9 505 aa7.71□□□□□ -1.18
CLN3-213ENST00000565047 K7ERJ3 54 aa7.71□□□□□ -1.18
CLN3-213ENST00000565047 GHRHP01286 108 aa7.71□□□□□ -1.18
CLN3-213ENST00000565047 ATP11AUNQ6ZP68 121 aa7.71□□□□□ -1.18
CLN3-213ENST00000565047 TSTD3H0UI37 97 aa7.68□□□□□ -1.18
CLN3-213ENST00000565047 CRCT1Q9UGL9 99 aa7.68□□□□□ -1.18
CLN3-213ENST00000565047 TRBV7-4A0A0J9YYF1 115 aa7.67□□□□□ -1.18
CLN3-213ENST00000565047 COX6B2Q6YFQ2 88 aa7.66□□□□□ -1.18
CLN3-213ENST00000565047 ORMDL1Q9P0S3 153 aa7.65□□□□□ -1.18
CLN3-213ENST00000565047 KRTAP16-1A8MUX0 517 aa7.64□□□□□ -1.19
CLN3-213ENST00000565047 H3BQ85 93 aa7.64□□□□□ -1.19
CLN3-213ENST00000565047 TMEM256-PLSCR3K7ERE1 68 aa7.64□□□□□ -1.19
CLN3-213ENST00000565047 M0R2T5 61 aa7.63□□□□□ -1.19
CLN3-213ENST00000565047 PSMB2P49721 201 aa7.63□□□□□ -1.19
CLN3-213ENST00000565047 DSCR10P59022 87 aa7.63□□□□□ -1.19
CLN3-213ENST00000565047 ANKRD29Q8N6D5 301 aa7.63□□□□□ -1.19
CLN3-213ENST00000565047 DNAL4O96015 105 aa7.62□□□□□ -1.19
CLN3-213ENST00000565047 LINC00472Q9H8W2 130 aa7.62□□□□□ -1.19
CLN3-213ENST00000565047 UBE2V1Q13404 147 aa7.61□□□□□ -1.19
CLN3-213ENST00000565047 COX6CP09669 75 aa7.6□□□□□ -1.19
CLN3-213ENST00000565047 NOTCH2NLQ7Z3S9 236 aa7.6□□□□□ -1.19
CLN3-213ENST00000565047 A0A1B0GV72 72 aa7.59□□□□□ -1.19
CLN3-213ENST00000565047 TRACP01848 142 aa7.58□□□□□ -1.2
CLN3-213ENST00000565047 IGKV4-1P06312 121 aa7.58□□□□□ -1.2
CLN3-213ENST00000565047 LINC00313P59037 77 aa7.58□□□□□ -1.2
CLN3-213ENST00000565047 PCP4L1A6NKN8 68 aa7.57□□□□□ -1.2
CLN3-213ENST00000565047 CCKP06307 115 aa7.57□□□□□ -1.2
CLN3-213ENST00000565047 SIGMAR1Q99720 223 aa7.57□□□□□ -1.2
CLN3-213ENST00000565047 DEFB116Q30KQ4 102 aa7.56□□□□□ -1.2
CLN3-213ENST00000565047 M0R143 59 aa7.55□□□□□ -1.2
CLN3-213ENST00000565047 BATFQ16520 125 aa7.54□□□□□ -1.2
CLN3-213ENST00000565047 KRTAP9-8Q9BYQ0 159 aa7.53□□□□□ -1.2
CLN3-213ENST00000565047 MPLKIPQ8TAP9 179 aa7.52□□□□□ -1.21
CLN3-213ENST00000565047 RBM3P98179 157 aaKnown RBP7.51□□□□□ -1.21
CLN3-213ENST00000565047 USH2AO75445 5202 aa7.5□□□□□ -1.21
CLN3-213ENST00000565047 SCGB1C2P0DMR2 95 aa7.5□□□□□ -1.21
CLN3-213ENST00000565047 BAALC-AS2P0C853 105 aa7.49□□□□□ -1.21
CLN3-213ENST00000565047 IGHV6-1A0A0B4J1U7 121 aa7.48□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 70.9 ms