RNA–Protein interactions for RNA: ENST00000562754.1

VPS4A-202, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 2

Gene VPS4A, Length 633 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-202ENST00000562754 FAT3Q8TDW7 4589 aa9.8□□□□□ -0.84
VPS4A-202ENST00000562754 CRYGAP11844 174 aa9.8□□□□□ -0.84
VPS4A-202ENST00000562754 PPDPFLQ8WWR9 84 aa9.8□□□□□ -0.84
VPS4A-202ENST00000562754 LRP1Q07954 4544 aaKnown RBP9.8□□□□□ -0.84
VPS4A-202ENST00000562754 H3BMG7 143 aa9.79□□□□□ -0.84
VPS4A-202ENST00000562754 K7EP34 96 aa9.79□□□□□ -0.84
VPS4A-202ENST00000562754 MYCBP2O75592 4640 aa9.78□□□□□ -0.84
VPS4A-202ENST00000562754 IGLV9-49A0A0B4J1Y8 123 aa9.77□□□□□ -0.85
VPS4A-202ENST00000562754 C9JAW5 83 aa9.77□□□□□ -0.85
VPS4A-202ENST00000562754 LAMTOR3Q9UHA4 124 aa9.77□□□□□ -0.85
VPS4A-202ENST00000562754 OXTP01178 125 aa9.76□□□□□ -0.85
VPS4A-202ENST00000562754 BAALC-AS2P0C853 105 aa9.75□□□□□ -0.85
VPS4A-202ENST00000562754 MT1HL1P0DM35 61 aa9.75□□□□□ -0.85
VPS4A-202ENST00000562754 KRTAP10-8P60410 259 aa9.75□□□□□ -0.85
VPS4A-202ENST00000562754 MOBPQ13875 183 aa9.75□□□□□ -0.85
VPS4A-202ENST00000562754 MTURNQ8N3F0 131 aa9.75□□□□□ -0.85
VPS4A-202ENST00000562754 KRTAP29-1A8MX34 341 aaPredicted RBP9.74□□□□□ -0.85
VPS4A-202ENST00000562754 GHRHP01286 108 aa9.74□□□□□ -0.85
VPS4A-202ENST00000562754 H3BQ85 93 aa9.73□□□□□ -0.85
VPS4A-202ENST00000562754 TMEM256-PLSCR3K7ERE1 68 aa9.73□□□□□ -0.85
VPS4A-202ENST00000562754 NDUFV3P56181 108 aaKnown RBP9.73□□□□□ -0.85
VPS4A-202ENST00000562754 C9orf153Q5TBE3 101 aa9.73□□□□□ -0.85
VPS4A-202ENST00000562754 A0A1B0GV90 55 aa9.72□□□□□ -0.85
VPS4A-202ENST00000562754 Q8NBF4 154 aa9.72□□□□□ -0.85
VPS4A-202ENST00000562754 TYMSOSQ8TAI1 123 aa9.72□□□□□ -0.85
VPS4A-202ENST00000562754 F8WEM9 126 aa9.71□□□□□ -0.86
VPS4A-202ENST00000562754 UBE2V1Q13404 147 aa9.71□□□□□ -0.86
VPS4A-202ENST00000562754 GTF2H5Q6ZYL4 71 aa9.71□□□□□ -0.86
VPS4A-202ENST00000562754 TNXBP22105 4242 aa9.71□□□□□ -0.86
VPS4A-202ENST00000562754 PRO0461Q9UI25 63 aa9.7□□□□□ -0.86
VPS4A-202ENST00000562754 IGLV8-61A0A075B6I0 122 aa9.69□□□□□ -0.86
VPS4A-202ENST00000562754 H3BT86 120 aa9.69□□□□□ -0.86
VPS4A-202ENST00000562754 A0A1B0GV72 72 aa9.68□□□□□ -0.86
VPS4A-202ENST00000562754 SMCPP49901 116 aaPredicted RBP9.68□□□□□ -0.86
VPS4A-202ENST00000562754 ANKRD29Q8N6D5 301 aa9.68□□□□□ -0.86
VPS4A-202ENST00000562754 A0A0G2JQZ4 141 aa9.67□□□□□ -0.86
VPS4A-202ENST00000562754 SSBP3-AS1Q7Z2R9 100 aa9.67□□□□□ -0.86
VPS4A-202ENST00000562754 PCLOQ9Y6V0 5065 aa9.64□□□□□ -0.87
VPS4A-202ENST00000562754 IGFL1Q6UW32 110 aa9.64□□□□□ -0.87
VPS4A-202ENST00000562754 Q6JHZ5 121 aa9.63□□□□□ -0.87
VPS4A-202ENST00000562754 LINC00304Q8N9R0 145 aa9.63□□□□□ -0.87
VPS4A-202ENST00000562754 J3QL48 77 aa9.62□□□□□ -0.87
VPS4A-202ENST00000562754 DMBT1Q9UGM3 2413 aaPredicted RBP9.6□□□□□ -0.87
VPS4A-202ENST00000562754 OBSCN-AS1Q96MR7 158 aa9.6□□□□□ -0.87
VPS4A-202ENST00000562754 RBM3P98179 157 aaKnown RBP9.59□□□□□ -0.87
VPS4A-202ENST00000562754 TRBV7-4A0A0J9YYF1 115 aa9.58□□□□□ -0.88
VPS4A-202ENST00000562754 F8W1H4 67 aa9.57□□□□□ -0.88
VPS4A-202ENST00000562754 JMJD7-PLA2G4BH0Y9G9 81 aa9.57□□□□□ -0.88
VPS4A-202ENST00000562754 HRCT1Q6UXD1 115 aa9.57□□□□□ -0.88
VPS4A-202ENST00000562754 A0A1W2PNM2 257 aa9.55□□□□□ -0.88
VPS4A-202ENST00000562754 CD164Q04900 197 aa9.55□□□□□ -0.88
VPS4A-202ENST00000562754 SPAG11AQ6PDA7 123 aa9.55□□□□□ -0.88
VPS4A-202ENST00000562754 C14orf132Q9NPU4 83 aa9.55□□□□□ -0.88
VPS4A-202ENST00000562754 C4orf48Q5BLP8 95 aa9.54□□□□□ -0.88
VPS4A-202ENST00000562754 DSCR8Q96T75 97 aa9.54□□□□□ -0.88
VPS4A-202ENST00000562754 LOC110117498A0A087WWA1 95 aa9.52□□□□□ -0.89
VPS4A-202ENST00000562754 SPINK1P00995 79 aa9.52□□□□□ -0.89
VPS4A-202ENST00000562754 Q6Q795 121 aa9.52□□□□□ -0.89
VPS4A-202ENST00000562754 Q6ZQT0 140 aa9.52□□□□□ -0.89
VPS4A-202ENST00000562754 TRBV7-7A0A0K0K1E9 115 aa9.51□□□□□ -0.89
VPS4A-202ENST00000562754 ETDBQ3ZM63 59 aa9.51□□□□□ -0.89
VPS4A-202ENST00000562754 TEN1Q86WV5 123 aa9.51□□□□□ -0.89
VPS4A-202ENST00000562754 CCKP06307 115 aa9.5□□□□□ -0.89
VPS4A-202ENST00000562754 RPS29P62273 56 aaKnown RBP9.49□□□□□ -0.89
VPS4A-202ENST00000562754 PDE6GP18545 87 aa9.47□□□□□ -0.89
VPS4A-202ENST00000562754 VPS25Q9BRG1 176 aa9.47□□□□□ -0.89
VPS4A-202ENST00000562754 A0A087WSZ3 146 aa9.44□□□□□ -0.9
VPS4A-202ENST00000562754 Q5XG85 94 aa9.44□□□□□ -0.9
VPS4A-202ENST00000562754 LIMD2Q9BT23 127 aa9.44□□□□□ -0.9
VPS4A-202ENST00000562754 RETNLBQ9BQ08 111 aa9.41□□□□□ -0.9
VPS4A-202ENST00000562754 C21orf62-AS1Q17RA5 79 aa9.39□□□□□ -0.91
VPS4A-202ENST00000562754 ASB16-AS1Q495Z4 193 aa9.38□□□□□ -0.91
VPS4A-202ENST00000562754 SS18L2Q9UHA2 77 aa9.38□□□□□ -0.91
VPS4A-202ENST00000562754 C1orf195Q5TG92 126 aa9.36□□□□□ -0.91
VPS4A-202ENST00000562754 A0A1B0GW54 56 aa9.35□□□□□ -0.91
VPS4A-202ENST00000562754 Q96NJ1 140 aa9.34□□□□□ -0.91
VPS4A-202ENST00000562754 HERC1Q15751 4861 aa9.3□□□□□ -0.92
VPS4A-202ENST00000562754 PRR4Q16378 134 aa9.29□□□□□ -0.92
VPS4A-202ENST00000562754 LINC00472Q9H8W2 130 aa9.29□□□□□ -0.92
VPS4A-202ENST00000562754 FP248Q71RG6 208 aaPredicted RBP9.28□□□□□ -0.92
VPS4A-202ENST00000562754 LINC00846Q9NV44 126 aa9.28□□□□□ -0.92
VPS4A-202ENST00000562754 DEFB116Q30KQ4 102 aa9.26□□□□□ -0.93
VPS4A-202ENST00000562754 IGLV7-46A0A075B6I9 117 aa9.25□□□□□ -0.93
VPS4A-202ENST00000562754 Q6ZVQ6 151 aa9.25□□□□□ -0.93
VPS4A-202ENST00000562754 NREPQ16612 68 aa9.24□□□□□ -0.93
VPS4A-202ENST00000562754 FAM240AA0A1B0GVK7 77 aa9.23□□□□□ -0.93
VPS4A-202ENST00000562754 SIGMAR1Q99720 223 aa9.23□□□□□ -0.93
VPS4A-202ENST00000562754 IGKV4-1P06312 121 aa9.22□□□□□ -0.93
VPS4A-202ENST00000562754 ACYP1P07311 99 aa9.19□□□□□ -0.94
VPS4A-202ENST00000562754 UBL5Q9BZL1 73 aa9.19□□□□□ -0.94
VPS4A-202ENST00000562754 J3KT08 172 aa9.17□□□□□ -0.94
VPS4A-202ENST00000562754 KRTAP13-3Q3SY46 172 aa9.17□□□□□ -0.94
VPS4A-202ENST00000562754 J3QR89 54 aa9.16□□□□□ -0.94
VPS4A-202ENST00000562754 HMCN2Q8NDA2 5059 aa9.15□□□□□ -0.94
VPS4A-202ENST00000562754 TPRXLQ17RH7 258 aa9.15□□□□□ -0.94
VPS4A-202ENST00000562754 BPY2O14599 106 aa9.14□□□□□ -0.95
VPS4A-202ENST00000562754 DSCR10P59022 87 aa9.14□□□□□ -0.95
VPS4A-202ENST00000562754 C9orf92A6NGG3 77 aa9.12□□□□□ -0.95
VPS4A-202ENST00000562754 A8MWP4 228 aa9.12□□□□□ -0.95
VPS4A-202ENST00000562754 IGKV3D-7A0A0C4DH55 119 aa9.11□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 81.1 ms