RNA–Protein interactions for RNA: ENST00000560435.1

SPG11-222, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 5

Gene SPG11, Length 413 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-222ENST00000560435 LINC00158P58513 81 aa-0.39□□□□□ -2.47
SPG11-222ENST00000560435 SNRPFP62306 86 aaKnown RBP-0.39□□□□□ -2.47
SPG11-222ENST00000560435 PRO3102Q9H379 93 aa-0.39□□□□□ -2.47
SPG11-222ENST00000560435 RABAC1Q9UI14 185 aa-0.39□□□□□ -2.47
SPG11-222ENST00000560435 ANK3Q12955 4377 aaKnown RBP-0.39□□□□□ -2.47
SPG11-222ENST00000560435 RANBP2P49792 3224 aaKnown RBP-0.4□□□□□ -2.47
SPG11-222ENST00000560435 NWD1Q149M9 1564 aa-0.4□□□□□ -2.47
SPG11-222ENST00000560435 BIRC6Q9NR09 4857 aa-0.4□□□□□ -2.47
SPG11-222ENST00000560435 PKHD1L1Q86WI1 4243 aa-0.4□□□□□ -2.47
SPG11-222ENST00000560435 CCNB3Q8WWL7 1395 aa-0.4□□□□□ -2.47
SPG11-222ENST00000560435 POLR1AO95602 1720 aaPredicted RBP-0.4□□□□□ -2.47
SPG11-222ENST00000560435 SUPT6HQ7KZ85 1726 aaKnown RBP-0.4□□□□□ -2.47
SPG11-222ENST00000560435 TIAM2Q8IVF5 1701 aa-0.4□□□□□ -2.47
SPG11-222ENST00000560435 LAMA2P24043 3122 aaKnown RBP-0.4□□□□□ -2.47
SPG11-222ENST00000560435 CEBPZOSA8MTT3 80 aa-0.4□□□□□ -2.47
SPG11-222ENST00000560435 PRLHP81277 87 aa-0.4□□□□□ -2.47
SPG11-222ENST00000560435 LINC00643Q86TS7 51 aa-0.4□□□□□ -2.47
SPG11-222ENST00000560435 WFDC9Q8NEX5 89 aa-0.4□□□□□ -2.47
SPG11-222ENST00000560435 MAP3K1Q13233 1512 aa-0.4□□□□□ -2.47
SPG11-222ENST00000560435 PKD1L2Q7Z442 2459 aa-0.4□□□□□ -2.47
SPG11-222ENST00000560435 ITPR1Q14643 2758 aa-0.4□□□□□ -2.47
SPG11-222ENST00000560435 NCOA2Q15596 1464 aa-0.41□□□□□ -2.47
SPG11-222ENST00000560435 DOT1LQ8TEK3 1739 aa-0.41□□□□□ -2.47
SPG11-222ENST00000560435 CEP290O15078 2479 aa-0.41□□□□□ -2.47
SPG11-222ENST00000560435 TMEM131LA2VDJ0 1609 aa-0.41□□□□□ -2.47
SPG11-222ENST00000560435 FAM186AA6NE01 2351 aa-0.41□□□□□ -2.47
SPG11-222ENST00000560435 DEPDC5O75140 1603 aa-0.41□□□□□ -2.47
SPG11-222ENST00000560435 PVALEFA0A1B0GWK0 134 aa-0.41□□□□□ -2.48
SPG11-222ENST00000560435 K7EP34 96 aa-0.41□□□□□ -2.48
SPG11-222ENST00000560435 ACYP1P07311 99 aa-0.41□□□□□ -2.48
SPG11-222ENST00000560435 MT1HP80294 61 aa-0.41□□□□□ -2.48
SPG11-222ENST00000560435 S100A16Q96FQ6 103 aaKnown RBP-0.41□□□□□ -2.48
SPG11-222ENST00000560435 RELNP78509 3460 aa-0.41□□□□□ -2.48
SPG11-222ENST00000560435 ZNF831Q5JPB2 1677 aa-0.41□□□□□ -2.48
SPG11-222ENST00000560435 DNAH11Q96DT5 4516 aa-0.41□□□□□ -2.48
SPG11-222ENST00000560435 ANKRD50Q9ULJ7 1429 aa-0.41□□□□□ -2.48
SPG11-222ENST00000560435 VPS13BQ7Z7G8 4022 aa-0.41□□□□□ -2.48
SPG11-222ENST00000560435 DIP2BQ9P265 1576 aa-0.41□□□□□ -2.48
SPG11-222ENST00000560435 NIPBLQ6KC79 2804 aaeCLIP-0.42□□□□□ -2.48
SPG11-222ENST00000560435 NESP48681 1621 aa-0.42□□□□□ -2.48
SPG11-222ENST00000560435 RGPD3A6NKT7 1758 aaPredicted RBP-0.42□□□□□ -2.48
SPG11-222ENST00000560435 LTN1O94822 1766 aa-0.42□□□□□ -2.48
SPG11-222ENST00000560435 AKAP12Q02952 1782 aa-0.42□□□□□ -2.48
SPG11-222ENST00000560435 RGPD4Q7Z3J3 1758 aa-0.42□□□□□ -2.48
SPG11-222ENST00000560435 SCN11AQ9UI33 1791 aa-0.42□□□□□ -2.48
SPG11-222ENST00000560435 ACACBO00763 2458 aa-0.42□□□□□ -2.48
SPG11-222ENST00000560435 URB2Q14146 1524 aaKnown RBP-0.42□□□□□ -2.48
SPG11-222ENST00000560435 MAGI3Q5TCQ9 1506 aa-0.42□□□□□ -2.48
SPG11-222ENST00000560435 IFI6P09912 130 aa-0.42□□□□□ -2.48
SPG11-222ENST00000560435 DEFB130BP0DP73 79 aa-0.42□□□□□ -2.48
SPG11-222ENST00000560435 DEFB130AP0DP74 79 aa-0.42□□□□□ -2.48
SPG11-222ENST00000560435 KRTAP19-5Q3LI72 72 aa-0.42□□□□□ -2.48
SPG11-222ENST00000560435 TDRG1Q3Y452 100 aa-0.42□□□□□ -2.48
SPG11-222ENST00000560435 V9GYS6 101 aa-0.42□□□□□ -2.48
SPG11-222ENST00000560435 DNAH1Q9P2D7 4330 aa-0.42□□□□□ -2.48
SPG11-222ENST00000560435 C5orf42Q9H799 3197 aa-0.42□□□□□ -2.48
SPG11-222ENST00000560435 LAMA3Q16787 3333 aa-0.42□□□□□ -2.48
SPG11-222ENST00000560435 ACACAQ13085 2346 aa-0.42□□□□□ -2.48
SPG11-222ENST00000560435 DOPEY1Q5JWR5 2465 aa-0.42□□□□□ -2.48
SPG11-222ENST00000560435 CCDC168Q8NDH2 2452 aa-0.42□□□□□ -2.48
SPG11-222ENST00000560435 CCDC88BA6NC98 1476 aa-0.42□□□□□ -2.48
SPG11-222ENST00000560435 RYR1P21817 5038 aa-0.42□□□□□ -2.48
SPG11-222ENST00000560435 BPTFQ12830 3046 aa-0.43□□□□□ -2.48
SPG11-222ENST00000560435 ABCC3O15438 1527 aa-0.43□□□□□ -2.48
SPG11-222ENST00000560435 UMAD1C9J7I0 102 aa-0.43□□□□□ -2.48
SPG11-222ENST00000560435 HMGA1P17096 107 aaKnown RBP-0.43□□□□□ -2.48
SPG11-222ENST00000560435 IFI27P40305 119 aaPredicted RBP-0.43□□□□□ -2.48
SPG11-222ENST00000560435 DEFB121Q5J5C9 76 aa-0.43□□□□□ -2.48
SPG11-222ENST00000560435 Q9H521 79 aa-0.43□□□□□ -2.48
SPG11-222ENST00000560435 S4R3F8 94 aa-0.43□□□□□ -2.48
SPG11-222ENST00000560435 TTC37Q6PGP7 1564 aa-0.44□□□□□ -2.48
SPG11-222ENST00000560435 SACSQ9NZJ4 4579 aa-0.44□□□□□ -2.48
SPG11-222ENST00000560435 DNAH2Q9P225 4427 aa-0.44□□□□□ -2.48
SPG11-222ENST00000560435 ARFGEF2Q9Y6D5 1785 aa-0.44□□□□□ -2.48
SPG11-222ENST00000560435 DEFB131BA0A096LNP1 70 aa-0.44□□□□□ -2.48
SPG11-222ENST00000560435 USP9XQ93008 2570 aaPredicted RBP-0.44□□□□□ -2.48
SPG11-222ENST00000560435 PPLO60437 1756 aa-0.45□□□□□ -2.48
SPG11-222ENST00000560435 KIF14Q15058 1648 aa-0.45□□□□□ -2.48
SPG11-222ENST00000560435 MAP3K4Q9Y6R4 1608 aa-0.45□□□□□ -2.48
SPG11-222ENST00000560435 COL12A1Q99715 3063 aa-0.45□□□□□ -2.48
SPG11-222ENST00000560435 RIF1Q5UIP0 2472 aaKnown RBP-0.45□□□□□ -2.48
SPG11-222ENST00000560435 KANTRA0A1W2PQU2 76 aa-0.45□□□□□ -2.48
SPG11-222ENST00000560435 NDUFA4O00483 81 aa-0.45□□□□□ -2.48
SPG11-222ENST00000560435 IAPPP10997 89 aa-0.45□□□□□ -2.48
SPG11-222ENST00000560435 DEFA5Q01523 94 aa-0.45□□□□□ -2.48
SPG11-222ENST00000560435 CHD7Q9P2D1 2997 aa-0.45□□□□□ -2.48
SPG11-222ENST00000560435 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP-0.45□□□□□ -2.48
SPG11-222ENST00000560435 KIAA1109Q2LD37 5005 aa-0.45□□□□□ -2.48
SPG11-222ENST00000560435 PIK3C2BO00750 1634 aa-0.46□□□□□ -2.48
SPG11-222ENST00000560435 HYDINQ4G0P3 5121 aa-0.46□□□□□ -2.48
SPG11-222ENST00000560435 UACAQ9BZF9 1416 aa-0.46□□□□□ -2.48
SPG11-222ENST00000560435 TLN2Q9Y4G6 2542 aa-0.46□□□□□ -2.48
SPG11-222ENST00000560435 CRIP1P50238 77 aa-0.46□□□□□ -2.48
SPG11-222ENST00000560435 NREPQ16612 68 aa-0.46□□□□□ -2.48
SPG11-222ENST00000560435 DEFB110Q30KQ9 67 aa-0.46□□□□□ -2.48
SPG11-222ENST00000560435 ATP5EP2Q5VTU8 51 aa-0.46□□□□□ -2.48
SPG11-222ENST00000560435 KCNQ1DNQ9H478 68 aa-0.46□□□□□ -2.48
SPG11-222ENST00000560435 ST20Q9HBF5 79 aa-0.46□□□□□ -2.48
SPG11-222ENST00000560435 LRBAP50851 2863 aa-0.46□□□□□ -2.48
SPG11-222ENST00000560435 SPENQ96T58 3664 aaKnown RBP-0.46□□□□□ -2.48
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms