RNA–Protein interactions for RNA: ENST00000559192.5

USP3-210, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 5,499 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-210ENST00000559192 C9orf163Q8N9P6 203 aa4.56□□□□□ -1.68
USP3-210ENST00000559192 CSAG1Q6PB30 78 aa4.56□□□□□ -1.68
USP3-210ENST00000559192 ZNF292O60281 2723 aa4.56□□□□□ -1.68
USP3-210ENST00000559192 PRR26Q8N8Z3 221 aa4.56□□□□□ -1.68
USP3-210ENST00000559192 CR1P17927 2039 aa4.56□□□□□ -1.68
USP3-210ENST00000559192 MTORP42345 2549 aa4.55□□□□□ -1.68
USP3-210ENST00000559192 LRRK2Q5S007 2527 aa4.55□□□□□ -1.68
USP3-210ENST00000559192 ATMQ13315 3056 aa4.55□□□□□ -1.68
USP3-210ENST00000559192 TLX1NBP0CAT3 122 aa4.55□□□□□ -1.68
USP3-210ENST00000559192 PLA2G2DQ9UNK4 145 aa4.54□□□□□ -1.68
USP3-210ENST00000559192 DMXL1Q9Y485 3027 aa4.54□□□□□ -1.68
USP3-210ENST00000559192 ACANP16112 2415 aa4.54□□□□□ -1.68
USP3-210ENST00000559192 EPG5Q9HCE0 2579 aa4.54□□□□□ -1.68
USP3-210ENST00000559192 A0A1B0GVX0 72 aa4.53□□□□□ -1.68
USP3-210ENST00000559192 Q8N9P0 234 aaPredicted RBP4.52□□□□□ -1.69
USP3-210ENST00000559192 RELNP78509 3460 aa4.52□□□□□ -1.69
USP3-210ENST00000559192 DMAC1Q96GE9 116 aa4.52□□□□□ -1.69
USP3-210ENST00000559192 MAP1AP78559 2803 aaPredicted RBP4.51□□□□□ -1.69
USP3-210ENST00000559192 KRTAP24-1Q3LI83 254 aa4.51□□□□□ -1.69
USP3-210ENST00000559192 SPRR4Q96PI1 79 aa4.51□□□□□ -1.69
USP3-210ENST00000559192 SVEP1Q4LDE5 3571 aa4.51□□□□□ -1.69
USP3-210ENST00000559192 Q5VV11 94 aa4.51□□□□□ -1.69
USP3-210ENST00000559192 SPENQ96T58 3664 aaKnown RBP4.51□□□□□ -1.69
USP3-210ENST00000559192 MUC3AQ02505 3323 aa4.5□□□□□ -1.69
USP3-210ENST00000559192 ANAPC11Q9NYG5 84 aa4.5□□□□□ -1.69
USP3-210ENST00000559192 LINC01558Q9Y6Z2 57 aa4.5□□□□□ -1.69
USP3-210ENST00000559192 ZFYVE26Q68DK2 2539 aa4.5□□□□□ -1.69
USP3-210ENST00000559192 IGLV5-37A0A075B6J1 123 aa4.49□□□□□ -1.69
USP3-210ENST00000559192 HRNRQ86YZ3 2850 aaPredicted RBP4.49□□□□□ -1.69
USP3-210ENST00000559192 KRTAP16-1A8MUX0 517 aa4.48□□□□□ -1.69
USP3-210ENST00000559192 CNBPP62633 177 aaKnown RBP4.48□□□□□ -1.69
USP3-210ENST00000559192 TYMSOSQ8TAI1 123 aa4.48□□□□□ -1.69
USP3-210ENST00000559192 IGLV7-46A0A075B6I9 117 aa4.47□□□□□ -1.69
USP3-210ENST00000559192 RTL8CO15255 209 aa4.47□□□□□ -1.69
USP3-210ENST00000559192 Q8N1X5 172 aa4.47□□□□□ -1.69
USP3-210ENST00000559192 CHD6Q8TD26 2715 aa4.47□□□□□ -1.69
USP3-210ENST00000559192 KRTAP26-1Q6PEX3 210 aa4.46□□□□□ -1.69
USP3-210ENST00000559192 NBDYA0A0U1RRE5 68 aa4.46□□□□□ -1.7
USP3-210ENST00000559192 A0A1B0GU33 70 aa4.46□□□□□ -1.7
USP3-210ENST00000559192 SPINK7P58062 85 aa4.46□□□□□ -1.7
USP3-210ENST00000559192 FLNAP21333 2647 aaKnown RBP4.45□□□□□ -1.7
USP3-210ENST00000559192 SPRR1AP35321 89 aa4.44□□□□□ -1.7
USP3-210ENST00000559192 LINC00483Q53H64 154 aa4.44□□□□□ -1.7
USP3-210ENST00000559192 CENPEQ02224 2701 aa4.43□□□□□ -1.7
USP3-210ENST00000559192 K7EIL1 84 aa4.43□□□□□ -1.7
USP3-210ENST00000559192 COL12A1Q99715 3063 aa4.42□□□□□ -1.7
USP3-210ENST00000559192 MMP24-AS1A0A0U1RRL7 71 aa4.41□□□□□ -1.7
USP3-210ENST00000559192 TNP2Q05952 138 aa4.41□□□□□ -1.7
USP3-210ENST00000559192 GCN1Q92616 2671 aaKnown RBP4.41□□□□□ -1.7
USP3-210ENST00000559192 DCHS2Q6V1P9 2916 aa4.41□□□□□ -1.7
USP3-210ENST00000559192 FASNP49327 2511 aaKnown RBP4.41□□□□□ -1.7
USP3-210ENST00000559192 BAHCC1Q9P281 2608 aa4.4□□□□□ -1.71
USP3-210ENST00000559192 NBEAL2Q6ZNJ1 2754 aa4.4□□□□□ -1.71
USP3-210ENST00000559192 ITPR3Q14573 2671 aa4.39□□□□□ -1.71
USP3-210ENST00000559192 HRES1P13985 223 aa4.39□□□□□ -1.71
USP3-210ENST00000559192 C9orf92A6NGG3 77 aa4.39□□□□□ -1.71
USP3-210ENST00000559192 KRTAP4-16G5E9R7 235 aaPredicted RBP4.39□□□□□ -1.71
USP3-210ENST00000559192 PSORS1C2Q9UIG4 136 aa4.39□□□□□ -1.71
USP3-210ENST00000559192 TEX15Q9BXT5 2789 aa4.38□□□□□ -1.71
USP3-210ENST00000559192 BSNQ9UPA5 3926 aa4.38□□□□□ -1.71
USP3-210ENST00000559192 ZCCHC13Q8WW36 166 aaKnown RBP4.38□□□□□ -1.71
USP3-210ENST00000559192 LINC00472Q9H8W2 130 aa4.38□□□□□ -1.71
USP3-210ENST00000559192 ZNF861PO60384 105 aa4.37□□□□□ -1.71
USP3-210ENST00000559192 KRTAP21-3Q3LHN1 58 aa4.36□□□□□ -1.71
USP3-210ENST00000559192 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP4.36□□□□□ -1.71
USP3-210ENST00000559192 ASH1LQ9NR48 2969 aaKnown RBP4.36□□□□□ -1.71
USP3-210ENST00000559192 A8MU10 97 aa4.35□□□□□ -1.71
USP3-210ENST00000559192 ASB16-AS1Q495Z4 193 aa4.35□□□□□ -1.71
USP3-210ENST00000559192 CAMK2N1Q7Z7J9 78 aa4.35□□□□□ -1.71
USP3-210ENST00000559192 A0A087WTM6 91 aa4.35□□□□□ -1.71
USP3-210ENST00000559192 KRTAP1-5Q9BYS1 174 aa4.35□□□□□ -1.71
USP3-210ENST00000559192 ITPR1Q14643 2758 aa4.35□□□□□ -1.71
USP3-210ENST00000559192 COX6B2Q6YFQ2 88 aa4.34□□□□□ -1.71
USP3-210ENST00000559192 KRTAP7-1Q8IUC3 87 aa4.34□□□□□ -1.72
USP3-210ENST00000559192 KRTAP29-1A8MX34 341 aaPredicted RBP4.33□□□□□ -1.72
USP3-210ENST00000559192 ROMO1P60602 79 aa4.33□□□□□ -1.72
USP3-210ENST00000559192 LINC00304Q8N9R0 145 aa4.33□□□□□ -1.72
USP3-210ENST00000559192 LCE6AA0A183 80 aa4.32□□□□□ -1.72
USP3-210ENST00000559192 IGLV7-43P04211 117 aa4.32□□□□□ -1.72
USP3-210ENST00000559192 CELSR1Q9NYQ6 3014 aa4.31□□□□□ -1.72
USP3-210ENST00000559192 IGSF10Q6WRI0 2623 aa4.31□□□□□ -1.72
USP3-210ENST00000559192 UTP20O75691 2785 aaKnown RBP4.31□□□□□ -1.72
USP3-210ENST00000559192 ZFHX3Q15911 3703 aa4.31□□□□□ -1.72
USP3-210ENST00000559192 SPRR1BP22528 89 aa4.3□□□□□ -1.72
USP3-210ENST00000559192 A6NN06 94 aa4.3□□□□□ -1.72
USP3-210ENST00000559192 KRTAP11-1Q8IUC1 163 aa4.3□□□□□ -1.72
USP3-210ENST00000559192 HECTD1Q9ULT8 2610 aa4.29□□□□□ -1.72
USP3-210ENST00000559192 ATRQ13535 2644 aa4.29□□□□□ -1.72
USP3-210ENST00000559192 NDUFAF8A1L188 74 aa4.29□□□□□ -1.72
USP3-210ENST00000559192 PANO1I0J062 215 aa4.28□□□□□ -1.72
USP3-210ENST00000559192 ZANQ9Y493 2812 aa4.28□□□□□ -1.72
USP3-210ENST00000559192 FLG2Q5D862 2391 aaPredicted RBP4.28□□□□□ -1.72
USP3-210ENST00000559192 FLNCQ14315 2725 aa4.27□□□□□ -1.73
USP3-210ENST00000559192 RPL37P61927 97 aaKnown RBP4.27□□□□□ -1.73
USP3-210ENST00000559192 CFAP46Q8IYW2 2715 aa4.27□□□□□ -1.73
USP3-210ENST00000559192 UNC79Q9P2D8 2635 aa4.27□□□□□ -1.73
USP3-210ENST00000559192 SETXQ7Z333 2677 aaKnown RBP4.27□□□□□ -1.73
USP3-210ENST00000559192 Q5W150 140 aa4.26□□□□□ -1.73
USP3-210ENST00000559192 CUBNO60494 3623 aa4.26□□□□□ -1.73
USP3-210ENST00000559192 A0A087X002 238 aa4.25□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 52.5 ms