RNA–Protein interactions for RNA: ENST00000556210.1

CUX1-215, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,044 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-215ENST00000556210 CHKB-CPT1BH3BT56 60 aa9.56□□□□□ -0.88
CUX1-215ENST00000556210 FP248Q71RG6 208 aaPredicted RBP9.55□□□□□ -0.88
CUX1-215ENST00000556210 EPM2AB3EWF7 344 aa9.55□□□□□ -0.88
CUX1-215ENST00000556210 Q8NBF4 154 aa9.55□□□□□ -0.88
CUX1-215ENST00000556210 K7EQZ3 153 aa9.54□□□□□ -0.88
CUX1-215ENST00000556210 HCG22E2RYF7 251 aa9.53□□□□□ -0.88
CUX1-215ENST00000556210 KRTAP26-1Q6PEX3 210 aa9.53□□□□□ -0.88
CUX1-215ENST00000556210 A0A1W2PNM2 257 aa9.53□□□□□ -0.88
CUX1-215ENST00000556210 A6NED7 52 aa9.52□□□□□ -0.89
CUX1-215ENST00000556210 OCR1Q9BZK8 76 aa9.51□□□□□ -0.89
CUX1-215ENST00000556210 ANAPC11Q9NYG5 84 aa9.51□□□□□ -0.89
CUX1-215ENST00000556210 C16orf90A8MZG2 172 aa9.51□□□□□ -0.89
CUX1-215ENST00000556210 KRTAP1-5Q9BYS1 174 aa9.5□□□□□ -0.89
CUX1-215ENST00000556210 F8WDY8 70 aa9.5□□□□□ -0.89
CUX1-215ENST00000556210 FAM229BQ4G0N7 80 aa9.48□□□□□ -0.89
CUX1-215ENST00000556210 AKAP9Q99996 3911 aa9.48□□□□□ -0.89
CUX1-215ENST00000556210 NBDYA0A0U1RRE5 68 aa9.48□□□□□ -0.89
CUX1-215ENST00000556210 NUPR2A6NF83 97 aa9.47□□□□□ -0.89
CUX1-215ENST00000556210 CIRBP-AS1Q8TBR5 109 aa9.47□□□□□ -0.89
CUX1-215ENST00000556210 IGHV6-1A0A0B4J1U7 121 aa9.47□□□□□ -0.89
CUX1-215ENST00000556210 IGFL1Q6UW32 110 aa9.47□□□□□ -0.89
CUX1-215ENST00000556210 ANK3Q12955 4377 aaKnown RBP9.46□□□□□ -0.89
CUX1-215ENST00000556210 PCOTHQ58A44 107 aa9.46□□□□□ -0.9
CUX1-215ENST00000556210 CASC2Q6XLA1 102 aa9.46□□□□□ -0.9
CUX1-215ENST00000556210 C1orf64Q8NEQ6 169 aa9.46□□□□□ -0.9
CUX1-215ENST00000556210 IGLV5-52A0A0A0MRZ9 124 aa9.44□□□□□ -0.9
CUX1-215ENST00000556210 H0Y9P7 68 aa9.43□□□□□ -0.9
CUX1-215ENST00000556210 RETNLBQ9BQ08 111 aa9.43□□□□□ -0.9
CUX1-215ENST00000556210 A0A1B0GW54 56 aa9.43□□□□□ -0.9
CUX1-215ENST00000556210 PRR15LQ9BU68 103 aa9.42□□□□□ -0.9
CUX1-215ENST00000556210 IGLV5-48A0A075B6I7 105 aa9.42□□□□□ -0.9
CUX1-215ENST00000556210 MOBPQ13875 183 aa9.42□□□□□ -0.9
CUX1-215ENST00000556210 TGP01266 2768 aa9.4□□□□□ -0.9
CUX1-215ENST00000556210 TLX1NBP0CAT3 122 aa9.4□□□□□ -0.9
CUX1-215ENST00000556210 A8MUN3 132 aa9.38□□□□□ -0.91
CUX1-215ENST00000556210 APLNQ9ULZ1 77 aa9.38□□□□□ -0.91
CUX1-215ENST00000556210 SRRM2Q9UQ35 2752 aaKnown RBP9.37□□□□□ -0.91
CUX1-215ENST00000556210 hDV103S1A0JD37 113 aa9.37□□□□□ -0.91
CUX1-215ENST00000556210 DSCR10P59022 87 aa9.36□□□□□ -0.91
CUX1-215ENST00000556210 C1orf134Q5TEV5 83 aa9.36□□□□□ -0.91
CUX1-215ENST00000556210 RTL8CO15255 209 aa9.35□□□□□ -0.91
CUX1-215ENST00000556210 C9orf163Q8N9P6 203 aa9.35□□□□□ -0.91
CUX1-215ENST00000556210 CSMD3Q7Z407 3707 aa9.34□□□□□ -0.91
CUX1-215ENST00000556210 TRAV22A0A0B4J277 110 aa9.33□□□□□ -0.92
CUX1-215ENST00000556210 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP9.32□□□□□ -0.92
CUX1-215ENST00000556210 PLA2G2DQ9UNK4 145 aa9.31□□□□□ -0.92
CUX1-215ENST00000556210 KRTAP7-1Q8IUC3 87 aa9.3□□□□□ -0.92
CUX1-215ENST00000556210 PANO1I0J062 215 aa9.3□□□□□ -0.92
CUX1-215ENST00000556210 C4orf48Q5BLP8 95 aa9.28□□□□□ -0.92
CUX1-215ENST00000556210 SPRR4Q96PI1 79 aa9.28□□□□□ -0.92
CUX1-215ENST00000556210 A0A087WTM6 91 aa9.27□□□□□ -0.93
CUX1-215ENST00000556210 CNBPP62633 177 aaKnown RBP9.26□□□□□ -0.93
CUX1-215ENST00000556210 ZNF706Q9Y5V0 76 aaPredicted RBP9.26□□□□□ -0.93
CUX1-215ENST00000556210 KRTAP11-1Q8IUC1 163 aa9.26□□□□□ -0.93
CUX1-215ENST00000556210 SPRR1AP35321 89 aa9.25□□□□□ -0.93
CUX1-215ENST00000556210 LIMD2Q9BT23 127 aa9.25□□□□□ -0.93
CUX1-215ENST00000556210 PSORS1C2Q9UIG4 136 aa9.24□□□□□ -0.93
CUX1-215ENST00000556210 IGLV5-37A0A075B6J1 123 aa9.24□□□□□ -0.93
CUX1-215ENST00000556210 PRR15Q8IV56 129 aa9.22□□□□□ -0.93
CUX1-215ENST00000556210 KRTAP4-16G5E9R7 235 aaPredicted RBP9.21□□□□□ -0.93
CUX1-215ENST00000556210 Q1T7F1 81 aa9.21□□□□□ -0.94
CUX1-215ENST00000556210 COL7A1Q02388 2944 aa9.21□□□□□ -0.94
CUX1-215ENST00000556210 A8MWP4 228 aa9.21□□□□□ -0.94
CUX1-215ENST00000556210 SPAG11AQ6PDA7 123 aa9.2□□□□□ -0.94
CUX1-215ENST00000556210 TNP2Q05952 138 aa9.19□□□□□ -0.94
CUX1-215ENST00000556210 SPACA4Q8TDM5 124 aa9.18□□□□□ -0.94
CUX1-215ENST00000556210 H3BPC8 53 aa9.18□□□□□ -0.94
CUX1-215ENST00000556210 COA5Q86WW8 74 aa9.16□□□□□ -0.94
CUX1-215ENST00000556210 CYP4F30PQ9H0H9 118 aa9.16□□□□□ -0.94
CUX1-215ENST00000556210 ZNF861PO60384 105 aa9.12□□□□□ -0.95
CUX1-215ENST00000556210 CD164Q04900 197 aa9.12□□□□□ -0.95
CUX1-215ENST00000556210 ZCCHC13Q8WW36 166 aaKnown RBP9.11□□□□□ -0.95
CUX1-215ENST00000556210 IGKV2D-30A0A075B6S6 120 aa9.08□□□□□ -0.96
CUX1-215ENST00000556210 IGKV2-30P06310 120 aa9.08□□□□□ -0.96
CUX1-215ENST00000556210 TP53AIP1Q9HCN2 124 aa9.08□□□□□ -0.96
CUX1-215ENST00000556210 SPANXA2-OT1Q8N9U9 137 aa9.08□□□□□ -0.96
CUX1-215ENST00000556210 SMR3BP02814 79 aaPredicted RBP9.07□□□□□ -0.96
CUX1-215ENST00000556210 C8orf17Q9NRJ1 99 aa9.07□□□□□ -0.96
CUX1-215ENST00000556210 SPINK1P00995 79 aa9.07□□□□□ -0.96
CUX1-215ENST00000556210 Q8N9P0 234 aaPredicted RBP9.06□□□□□ -0.96
CUX1-215ENST00000556210 Q5VV11 94 aa9.04□□□□□ -0.96
CUX1-215ENST00000556210 FBN3Q75N90 2809 aa9.03□□□□□ -0.96
CUX1-215ENST00000556210 LCE6AA0A183 80 aa9.03□□□□□ -0.96
CUX1-215ENST00000556210 LOC101927531A0A1B0GV80 90 aa9.02□□□□□ -0.96
CUX1-215ENST00000556210 MRPL34Q9BQ48 92 aaKnown RBP9.02□□□□□ -0.97
CUX1-215ENST00000556210 IGLV7-43P04211 117 aa9.01□□□□□ -0.97
CUX1-215ENST00000556210 A0A1B0GVX0 72 aa9.01□□□□□ -0.97
CUX1-215ENST00000556210 PLA2G1BP04054 148 aaKnown RBP8.99□□□□□ -0.97
CUX1-215ENST00000556210 LINC00472Q9H8W2 130 aa8.99□□□□□ -0.97
CUX1-215ENST00000556210 DMBT1Q9UGM3 2413 aaPredicted RBP8.99□□□□□ -0.97
CUX1-215ENST00000556210 IGLV8-61A0A075B6I0 122 aa8.98□□□□□ -0.97
CUX1-215ENST00000556210 A8MU10 97 aa8.98□□□□□ -0.97
CUX1-215ENST00000556210 KTN1-AS1Q86SY8 53 aa8.98□□□□□ -0.97
CUX1-215ENST00000556210 RBM12B-AS1Q9P1G2 102 aa8.98□□□□□ -0.97
CUX1-215ENST00000556210 MMP24-AS1A0A0U1RRL7 71 aa8.97□□□□□ -0.97
CUX1-215ENST00000556210 KRTAP29-1A8MX34 341 aaPredicted RBP8.97□□□□□ -0.97
CUX1-215ENST00000556210 ATP11AUNQ6ZP68 121 aa8.97□□□□□ -0.97
CUX1-215ENST00000556210 LINC00313P59037 77 aa8.96□□□□□ -0.97
CUX1-215ENST00000556210 KRTAP10-2P60368 255 aa8.96□□□□□ -0.97
CUX1-215ENST00000556210 IGLV7-46A0A075B6I9 117 aa8.96□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 74.5 ms