RNA–Protein interactions for RNA: ENST00000547856.5

RAPGEF3-216, Transcript of Rap guanine nucleotide exchange factor 3, humanhuman

TSL 2

Gene RAPGEF3, Length 2,659 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAPGEF3-216ENST00000547856 PHF5AQ7RTV0 110 aaKnown RBP9.15□□□□□ -0.95
RAPGEF3-216ENST00000547856 COA5Q86WW8 74 aa9.15□□□□□ -0.95
RAPGEF3-216ENST00000547856 LINC00476Q8WZB0 136 aa9.15□□□□□ -0.95
RAPGEF3-216ENST00000547856 IGKV2D-24A0A075B6R9 120 aa9.14□□□□□ -0.95
RAPGEF3-216ENST00000547856 A0A087WSZ3 146 aa9.14□□□□□ -0.95
RAPGEF3-216ENST00000547856 SPAG11AQ6PDA7 123 aa9.13□□□□□ -0.95
RAPGEF3-216ENST00000547856 SPANXA2-OT1Q8N9U9 137 aa9.13□□□□□ -0.95
RAPGEF3-216ENST00000547856 MOBPQ13875 183 aa9.12□□□□□ -0.95
RAPGEF3-216ENST00000547856 KRTAP26-1Q6PEX3 210 aa9.11□□□□□ -0.95
RAPGEF3-216ENST00000547856 C7orf65Q6ZTY9 151 aa9.11□□□□□ -0.95
RAPGEF3-216ENST00000547856 CDC42SE1Q9NRR8 79 aa9.11□□□□□ -0.95
RAPGEF3-216ENST00000547856 CASC2Q6XLA1 102 aa9.11□□□□□ -0.95
RAPGEF3-216ENST00000547856 PCOTHQ58A44 107 aa9.1□□□□□ -0.95
RAPGEF3-216ENST00000547856 IGFL1Q6UW32 110 aa9.1□□□□□ -0.95
RAPGEF3-216ENST00000547856 LOC101927531A0A1B0GV80 90 aa9.09□□□□□ -0.95
RAPGEF3-216ENST00000547856 C4orf48Q5BLP8 95 aa9.09□□□□□ -0.95
RAPGEF3-216ENST00000547856 KRTAP4-16G5E9R7 235 aaPredicted RBP9.08□□□□□ -0.96
RAPGEF3-216ENST00000547856 SPART-AS1P0CW21 52 aa9.08□□□□□ -0.96
RAPGEF3-216ENST00000547856 Q8NAQ8 132 aa9.08□□□□□ -0.96
RAPGEF3-216ENST00000547856 IGLV1-50A0A075B6I6 118 aa9.08□□□□□ -0.96
RAPGEF3-216ENST00000547856 KRTAP29-1A8MX34 341 aaPredicted RBP9.07□□□□□ -0.96
RAPGEF3-216ENST00000547856 C9orf163Q8N9P6 203 aa9.07□□□□□ -0.96
RAPGEF3-216ENST00000547856 SPINK7P58062 85 aa9.06□□□□□ -0.96
RAPGEF3-216ENST00000547856 PKD1L1Q8TDX9 2849 aa9.05□□□□□ -0.96
RAPGEF3-216ENST00000547856 C8orf87E5RJ46 101 aa9.04□□□□□ -0.96
RAPGEF3-216ENST00000547856 FLNBO75369 2602 aaKnown RBP9.04□□□□□ -0.96
RAPGEF3-216ENST00000547856 CNBPP62633 177 aaKnown RBP9.04□□□□□ -0.96
RAPGEF3-216ENST00000547856 PRAC1Q96KF2 57 aa9.03□□□□□ -0.96
RAPGEF3-216ENST00000547856 BAHCC1Q9P281 2608 aa9.02□□□□□ -0.97
RAPGEF3-216ENST00000547856 SPRR1AP35321 89 aa9.01□□□□□ -0.97
RAPGEF3-216ENST00000547856 KRTAP7-1Q8IUC3 87 aa9.01□□□□□ -0.97
RAPGEF3-216ENST00000547856 H3BPC8 53 aa9.01□□□□□ -0.97
RAPGEF3-216ENST00000547856 IGLV7-46A0A075B6I9 117 aa8.99□□□□□ -0.97
RAPGEF3-216ENST00000547856 STAB1Q9NY15 2570 aa8.99□□□□□ -0.97
RAPGEF3-216ENST00000547856 PRLHP81277 87 aa8.99□□□□□ -0.97
RAPGEF3-216ENST00000547856 ANK2Q01484 3957 aa8.99□□□□□ -0.97
RAPGEF3-216ENST00000547856 FBN1P35555 2871 aaKnown RBP8.99□□□□□ -0.97
RAPGEF3-216ENST00000547856 H0Y9J4 135 aa8.98□□□□□ -0.97
RAPGEF3-216ENST00000547856 OXLD1Q5BKU9 147 aa8.98□□□□□ -0.97
RAPGEF3-216ENST00000547856 LINC00313P59037 77 aa8.97□□□□□ -0.97
RAPGEF3-216ENST00000547856 LINC01558Q9Y6Z2 57 aa8.97□□□□□ -0.97
RAPGEF3-216ENST00000547856 SRRM2Q9UQ35 2752 aaKnown RBP8.97□□□□□ -0.97
RAPGEF3-216ENST00000547856 TENM3Q9P273 2699 aa8.97□□□□□ -0.97
RAPGEF3-216ENST00000547856 CSMD3Q7Z407 3707 aa8.96□□□□□ -0.97
RAPGEF3-216ENST00000547856 A0A096LNI7 61 aa8.96□□□□□ -0.97
RAPGEF3-216ENST00000547856 KRTAP10-11P60412 298 aa8.96□□□□□ -0.98
RAPGEF3-216ENST00000547856 REG3GQ6UW15 175 aa8.96□□□□□ -0.98
RAPGEF3-216ENST00000547856 ADM2Q7Z4H4 148 aa8.96□□□□□ -0.98
RAPGEF3-216ENST00000547856 CASC10Q5T4H9 136 aa8.94□□□□□ -0.98
RAPGEF3-216ENST00000547856 A8MWP4 228 aa8.93□□□□□ -0.98
RAPGEF3-216ENST00000547856 CMYA5Q8N3K9 4069 aa8.93□□□□□ -0.98
RAPGEF3-216ENST00000547856 IGLV5-37A0A075B6J1 123 aa8.91□□□□□ -0.98
RAPGEF3-216ENST00000547856 PLAC8Q9NZF1 115 aa8.91□□□□□ -0.98
RAPGEF3-216ENST00000547856 PLA2G2DQ9UNK4 145 aa8.91□□□□□ -0.98
RAPGEF3-216ENST00000547856 H3BS24 57 aa8.9□□□□□ -0.98
RAPGEF3-216ENST00000547856 MAST4O15021 2626 aa8.9□□□□□ -0.99
RAPGEF3-216ENST00000547856 KRTAP24-1Q3LI83 254 aa8.89□□□□□ -0.99
RAPGEF3-216ENST00000547856 HRES1P13985 223 aa8.89□□□□□ -0.99
RAPGEF3-216ENST00000547856 TLX1NBP0CAT3 122 aa8.88□□□□□ -0.99
RAPGEF3-216ENST00000547856 MMP24-AS1A0A0U1RRL7 71 aa8.88□□□□□ -0.99
RAPGEF3-216ENST00000547856 NOTCH1P46531 2555 aa8.88□□□□□ -0.99
RAPGEF3-216ENST00000547856 LINC00472Q9H8W2 130 aa8.87□□□□□ -0.99
RAPGEF3-216ENST00000547856 PRR26Q8N8Z3 221 aa8.86□□□□□ -0.99
RAPGEF3-216ENST00000547856 IGKV2-24A0A0C4DH68 120 aa8.85□□□□□ -0.99
RAPGEF3-216ENST00000547856 LINC01556Q5JQF7 62 aa8.84□□□□□ -0.99
RAPGEF3-216ENST00000547856 MDFIQ99750 246 aa8.84□□□□□ -0.99
RAPGEF3-216ENST00000547856 IGLV8-61A0A075B6I0 122 aa8.83□□□□□ -1
RAPGEF3-216ENST00000547856 H3BNG1 76 aa8.83□□□□□ -1
RAPGEF3-216ENST00000547856 DNAH3Q8TD57 4116 aa8.82□□□□□ -1
RAPGEF3-216ENST00000547856 NBEAL1Q6ZS30 2694 aa8.81□□□□□ -1
RAPGEF3-216ENST00000547856 COL6A5A8TX70 2615 aa8.81□□□□□ -1
RAPGEF3-216ENST00000547856 LINC01554Q52M75 96 aa8.8□□□□□ -1
RAPGEF3-216ENST00000547856 TENM2Q9NT68 2774 aa8.8□□□□□ -1
RAPGEF3-216ENST00000547856 DEFB131BA0A096LNP1 70 aa8.77□□□□□ -1.01
RAPGEF3-216ENST00000547856 IGHV6-1A0A0B4J1U7 121 aa8.75□□□□□ -1.01
RAPGEF3-216ENST00000547856 K7EIL1 84 aa8.74□□□□□ -1.01
RAPGEF3-216ENST00000547856 KRTAP11-1Q8IUC1 163 aa8.74□□□□□ -1.01
RAPGEF3-216ENST00000547856 TP53AIP1Q9HCN2 124 aa8.74□□□□□ -1.01
RAPGEF3-216ENST00000547856 PLA2G1BP04054 148 aaKnown RBP8.72□□□□□ -1.01
RAPGEF3-216ENST00000547856 Q6ZR54 194 aa8.72□□□□□ -1.01
RAPGEF3-216ENST00000547856 C8orf17Q9NRJ1 99 aa8.71□□□□□ -1.01
RAPGEF3-216ENST00000547856 DNAH10OSP0CZ25 163 aa8.71□□□□□ -1.02
RAPGEF3-216ENST00000547856 COL7A1Q02388 2944 aa8.7□□□□□ -1.02
RAPGEF3-216ENST00000547856 IGLV9-49A0A0B4J1Y8 123 aa8.68□□□□□ -1.02
RAPGEF3-216ENST00000547856 HUWE1Q7Z6Z7 4374 aaKnown RBP8.67□□□□□ -1.02
RAPGEF3-216ENST00000547856 CHTF8P0CG12 524 aa8.67□□□□□ -1.02
RAPGEF3-216ENST00000547856 Q96NJ1 140 aa8.67□□□□□ -1.02
RAPGEF3-216ENST00000547856 A0A087X002 238 aa8.66□□□□□ -1.02
RAPGEF3-216ENST00000547856 NOTCH2NLQ7Z3S9 236 aa8.66□□□□□ -1.02
RAPGEF3-216ENST00000547856 MGAM2Q2M2H8 2515 aa8.65□□□□□ -1.02
RAPGEF3-216ENST00000547856 ASB16-AS1Q495Z4 193 aa8.65□□□□□ -1.03
RAPGEF3-216ENST00000547856 DNAH1Q9P2D7 4330 aa8.63□□□□□ -1.03
RAPGEF3-216ENST00000547856 CSAG1Q6PB30 78 aa8.63□□□□□ -1.03
RAPGEF3-216ENST00000547856 A0A1B0GU69 56 aa8.62□□□□□ -1.03
RAPGEF3-216ENST00000547856 RTL8CO15255 209 aa8.62□□□□□ -1.03
RAPGEF3-216ENST00000547856 MRPL34Q9BQ48 92 aaKnown RBP8.62□□□□□ -1.03
RAPGEF3-216ENST00000547856 SPRR1BP22528 89 aa8.62□□□□□ -1.03
RAPGEF3-216ENST00000547856 CDK2AP2O75956 126 aa8.61□□□□□ -1.03
RAPGEF3-216ENST00000547856 A0A1B0GVX0 72 aa8.6□□□□□ -1.03
RAPGEF3-216ENST00000547856 DNAH10Q8IVF4 4471 aa8.6□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms