RNA–Protein interactions for RNA: ENST00000545540.5

USP28-214, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2 BASIC

Gene USP28, Length 3,431 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-214ENST00000545540 FP248Q71RG6 208 aaPredicted RBP9.5□□□□□ -0.89
USP28-214ENST00000545540 A0A087WSZ3 146 aa9.5□□□□□ -0.89
USP28-214ENST00000545540 UBE2DNLQ8IWF7 75 aa9.49□□□□□ -0.89
USP28-214ENST00000545540 BCE1O60756 84 aa9.49□□□□□ -0.89
USP28-214ENST00000545540 IGFL1Q6UW32 110 aa9.48□□□□□ -0.89
USP28-214ENST00000545540 PLA2G2DQ9UNK4 145 aa9.46□□□□□ -0.89
USP28-214ENST00000545540 A0A0U1RQV1 116 aa9.46□□□□□ -0.9
USP28-214ENST00000545540 F8WDY8 70 aa9.45□□□□□ -0.9
USP28-214ENST00000545540 LINC00336Q6ZUF6 198 aa9.44□□□□□ -0.9
USP28-214ENST00000545540 TGP01266 2768 aa9.44□□□□□ -0.9
USP28-214ENST00000545540 IGLV5-37A0A075B6J1 123 aa9.44□□□□□ -0.9
USP28-214ENST00000545540 PANO1I0J062 215 aa9.43□□□□□ -0.9
USP28-214ENST00000545540 PLECQ15149 4684 aaKnown RBP9.42□□□□□ -0.9
USP28-214ENST00000545540 UBE2AP49459 152 aa9.42□□□□□ -0.9
USP28-214ENST00000545540 SPRR4Q96PI1 79 aa9.41□□□□□ -0.9
USP28-214ENST00000545540 C16orf90A8MZG2 172 aa9.4□□□□□ -0.91
USP28-214ENST00000545540 NDUFC1O43677 76 aa9.38□□□□□ -0.91
USP28-214ENST00000545540 SMIM26A0A096LP01 95 aa9.37□□□□□ -0.91
USP28-214ENST00000545540 HCG22E2RYF7 251 aa9.36□□□□□ -0.91
USP28-214ENST00000545540 FRAS1Q86XX4 4008 aa9.33□□□□□ -0.92
USP28-214ENST00000545540 IGLV9-49A0A0B4J1Y8 123 aa9.32□□□□□ -0.92
USP28-214ENST00000545540 BRK1Q8WUW1 75 aa9.32□□□□□ -0.92
USP28-214ENST00000545540 ANAPC11Q9NYG5 84 aa9.32□□□□□ -0.92
USP28-214ENST00000545540 LINC00208Q96KT6 92 aa9.31□□□□□ -0.92
USP28-214ENST00000545540 APLNQ9ULZ1 77 aa9.3□□□□□ -0.92
USP28-214ENST00000545540 H0Y9J4 135 aa9.29□□□□□ -0.92
USP28-214ENST00000545540 C1orf64Q8NEQ6 169 aa9.29□□□□□ -0.92
USP28-214ENST00000545540 CNBPP62633 177 aaKnown RBP9.29□□□□□ -0.92
USP28-214ENST00000545540 KMT2AQ03164 3969 aa9.28□□□□□ -0.92
USP28-214ENST00000545540 MDFIQ99750 246 aa9.28□□□□□ -0.92
USP28-214ENST00000545540 PKIGQ9Y2B9 76 aa9.27□□□□□ -0.92
USP28-214ENST00000545540 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP9.27□□□□□ -0.93
USP28-214ENST00000545540 STARD9Q9P2P6 4700 aa9.27□□□□□ -0.93
USP28-214ENST00000545540 PSPHP1O15172 72 aa9.25□□□□□ -0.93
USP28-214ENST00000545540 CASC2Q6XLA1 102 aa9.24□□□□□ -0.93
USP28-214ENST00000545540 C9orf163Q8N9P6 203 aa9.24□□□□□ -0.93
USP28-214ENST00000545540 A0A1B0GW54 56 aa9.23□□□□□ -0.93
USP28-214ENST00000545540 ATP5EP56381 51 aaPredicted RBP9.23□□□□□ -0.93
USP28-214ENST00000545540 PRKDCP78527 4128 aaKnown RBP9.23□□□□□ -0.93
USP28-214ENST00000545540 ZCCHC13Q8WW36 166 aaKnown RBP9.22□□□□□ -0.93
USP28-214ENST00000545540 FBN3Q75N90 2809 aa9.22□□□□□ -0.93
USP28-214ENST00000545540 NBDYA0A0U1RRE5 68 aa9.21□□□□□ -0.94
USP28-214ENST00000545540 hDV103S1A0JD37 113 aa9.21□□□□□ -0.94
USP28-214ENST00000545540 MEGF8Q7Z7M0 2845 aa9.21□□□□□ -0.94
USP28-214ENST00000545540 B9D2Q9BPU9 175 aa9.2□□□□□ -0.94
USP28-214ENST00000545540 LCE6AA0A183 80 aa9.2□□□□□ -0.94
USP28-214ENST00000545540 H0Y9P7 68 aa9.19□□□□□ -0.94
USP28-214ENST00000545540 MP68P56378 58 aa9.19□□□□□ -0.94
USP28-214ENST00000545540 PRR15Q8IV56 129 aa9.19□□□□□ -0.94
USP28-214ENST00000545540 IGLV8-61A0A075B6I0 122 aa9.17□□□□□ -0.94
USP28-214ENST00000545540 LINC00472Q9H8W2 130 aa9.17□□□□□ -0.94
USP28-214ENST00000545540 KRTAP29-1A8MX34 341 aaPredicted RBP9.17□□□□□ -0.94
USP28-214ENST00000545540 C14orf177Q52M58 125 aa9.16□□□□□ -0.94
USP28-214ENST00000545540 PCOTHQ58A44 107 aa9.16□□□□□ -0.94
USP28-214ENST00000545540 PRO0628Q9UI54 55 aa9.16□□□□□ -0.94
USP28-214ENST00000545540 A8MWP4 228 aa9.14□□□□□ -0.95
USP28-214ENST00000545540 Q6ZRN7 208 aaPredicted RBP9.14□□□□□ -0.95
USP28-214ENST00000545540 TRAV22A0A0B4J277 110 aa9.13□□□□□ -0.95
USP28-214ENST00000545540 NDUFS5O43920 106 aa9.13□□□□□ -0.95
USP28-214ENST00000545540 DNAH2Q9P225 4427 aa9.12□□□□□ -0.95
USP28-214ENST00000545540 MOBPQ13875 183 aa9.12□□□□□ -0.95
USP28-214ENST00000545540 DNAH8Q96JB1 4490 aa9.12□□□□□ -0.95
USP28-214ENST00000545540 IGHV6-1A0A0B4J1U7 121 aa9.12□□□□□ -0.95
USP28-214ENST00000545540 HECTD4Q9Y4D8 3996 aa9.11□□□□□ -0.95
USP28-214ENST00000545540 SPINK6Q6UWN8 80 aa9.11□□□□□ -0.95
USP28-214ENST00000545540 A8MU10 97 aa9.11□□□□□ -0.95
USP28-214ENST00000545540 A0A087X002 238 aa9.1□□□□□ -0.95
USP28-214ENST00000545540 NOTCH2NLQ7Z3S9 236 aa9.1□□□□□ -0.95
USP28-214ENST00000545540 VPS13DQ5THJ4 4388 aa9.09□□□□□ -0.95
USP28-214ENST00000545540 PSORS1C2Q9UIG4 136 aa9.09□□□□□ -0.95
USP28-214ENST00000545540 SPRR1BP22528 89 aa9.09□□□□□ -0.95
USP28-214ENST00000545540 MMP24-AS1A0A0U1RRL7 71 aa9.08□□□□□ -0.96
USP28-214ENST00000545540 A8MUN3 132 aa9.08□□□□□ -0.96
USP28-214ENST00000545540 KRTAP13-1Q8IUC0 172 aa9.08□□□□□ -0.96
USP28-214ENST00000545540 DNAH17Q9UFH2 4485 aa9.08□□□□□ -0.96
USP28-214ENST00000545540 SPACA4Q8TDM5 124 aa9.07□□□□□ -0.96
USP28-214ENST00000545540 DNAH6Q9C0G6 4158 aa9.07□□□□□ -0.96
USP28-214ENST00000545540 A0A087WTM6 91 aa9.06□□□□□ -0.96
USP28-214ENST00000545540 NDUFB1O75438 58 aa9.05□□□□□ -0.96
USP28-214ENST00000545540 RTL8CO15255 209 aa9.05□□□□□ -0.96
USP28-214ENST00000545540 DNHD1Q96M86 4753 aa9.05□□□□□ -0.96
USP28-214ENST00000545540 Q96NJ1 140 aa9.05□□□□□ -0.96
USP28-214ENST00000545540 DYNC2H1Q8NCM8 4307 aaKnown RBP9.04□□□□□ -0.96
USP28-214ENST00000545540 NUPR2A6NF83 97 aa9.01□□□□□ -0.97
USP28-214ENST00000545540 CYP4F30PQ9H0H9 118 aa9□□□□□ -0.97
USP28-214ENST00000545540 CIRBP-AS1Q8TBR5 109 aa8.99□□□□□ -0.97
USP28-214ENST00000545540 WWC2-AS2Q96NR7 200 aa8.99□□□□□ -0.97
USP28-214ENST00000545540 C8orf17Q9NRJ1 99 aa8.98□□□□□ -0.97
USP28-214ENST00000545540 Q1T7F1 81 aa8.98□□□□□ -0.97
USP28-214ENST00000545540 RETNLBQ9BQ08 111 aa8.97□□□□□ -0.97
USP28-214ENST00000545540 DNAH11Q96DT5 4516 aa8.97□□□□□ -0.97
USP28-214ENST00000545540 CD164Q04900 197 aa8.97□□□□□ -0.97
USP28-214ENST00000545540 IGLV5-52A0A0A0MRZ9 124 aa8.96□□□□□ -0.97
USP28-214ENST00000545540 CDK2AP2O75956 126 aa8.96□□□□□ -0.98
USP28-214ENST00000545540 LY6G6CO95867 125 aa8.95□□□□□ -0.98
USP28-214ENST00000545540 PRR15LQ9BU68 103 aa8.94□□□□□ -0.98
USP28-214ENST00000545540 COA5Q86WW8 74 aa8.93□□□□□ -0.98
USP28-214ENST00000545540 ZNF861PO60384 105 aa8.93□□□□□ -0.98
USP28-214ENST00000545540 A0A1B0GVX0 72 aa8.92□□□□□ -0.98
USP28-214ENST00000545540 CHKB-CPT1BH3BT56 60 aa8.92□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 143 ms