RNA–Protein interactions for RNA: ENST00000542663.1

CLSTN3-214, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-214ENST00000542663 A0A1B0GWB2 263 aa9.16□□□□□ -0.94
CLSTN3-214ENST00000542663 Q75L30 129 aa9.15□□□□□ -0.94
CLSTN3-214ENST00000542663 S100A6P06703 90 aa9.14□□□□□ -0.95
CLSTN3-214ENST00000542663 SCGB1D4Q6XE38 83 aa9.14□□□□□ -0.95
CLSTN3-214ENST00000542663 ATP11AUNQ6ZP68 121 aa9.14□□□□□ -0.95
CLSTN3-214ENST00000542663 PCP2Q8IVA1 136 aa9.12□□□□□ -0.95
CLSTN3-214ENST00000542663 OBSCN-AS1Q96MR7 158 aa9.12□□□□□ -0.95
CLSTN3-214ENST00000542663 SNRPEP62304 92 aaKnown RBP9.1□□□□□ -0.95
CLSTN3-214ENST00000542663 KRTAP19-1Q8IUB9 90 aa9.09□□□□□ -0.95
CLSTN3-214ENST00000542663 LCE2BO14633 110 aa9.07□□□□□ -0.96
CLSTN3-214ENST00000542663 MT2AP02795 61 aa9.07□□□□□ -0.96
CLSTN3-214ENST00000542663 HSBP1L1C9JCN9 74 aa9.06□□□□□ -0.96
CLSTN3-214ENST00000542663 COPS9Q8WXC6 57 aa9.06□□□□□ -0.96
CLSTN3-214ENST00000542663 TRBV7-7A0A0K0K1E9 115 aa9.05□□□□□ -0.96
CLSTN3-214ENST00000542663 A4D1N5 150 aa9.05□□□□□ -0.96
CLSTN3-214ENST00000542663 A6NDN8 102 aa9.05□□□□□ -0.96
CLSTN3-214ENST00000542663 IFITM1P13164 125 aa9.05□□□□□ -0.96
CLSTN3-214ENST00000542663 Q6ZVH6 145 aa9.05□□□□□ -0.96
CLSTN3-214ENST00000542663 F8WEM9 126 aa9.03□□□□□ -0.96
CLSTN3-214ENST00000542663 MUSTN1Q8IVN3 82 aa9.03□□□□□ -0.96
CLSTN3-214ENST00000542663 NHP2Q9NX24 153 aaKnown RBP9.03□□□□□ -0.96
CLSTN3-214ENST00000542663 SCGB1D1O95968 90 aa9.02□□□□□ -0.97
CLSTN3-214ENST00000542663 IGFL1Q6UW32 110 aa9.02□□□□□ -0.97
CLSTN3-214ENST00000542663 SMIM11BQ8TCY0 68 aa9.01□□□□□ -0.97
CLSTN3-214ENST00000542663 CLEC2BQ92478 149 aa9.01□□□□□ -0.97
CLSTN3-214ENST00000542663 MT1FP04733 61 aa9□□□□□ -0.97
CLSTN3-214ENST00000542663 Q6JHZ5 121 aa9□□□□□ -0.97
CLSTN3-214ENST00000542663 Q96NJ1 140 aa9□□□□□ -0.97
CLSTN3-214ENST00000542663 C20orf166-AS1Q96NR2 134 aa8.98□□□□□ -0.97
CLSTN3-214ENST00000542663 KRTAP9-3Q9BYQ3 159 aa8.98□□□□□ -0.97
CLSTN3-214ENST00000542663 MACF1Q9UPN3 7388 aaKnown RBP8.98□□□□□ -0.97
CLSTN3-214ENST00000542663 TRBV20-1A0A075B6N2 111 aa8.95□□□□□ -0.98
CLSTN3-214ENST00000542663 A8MUU9 505 aa8.95□□□□□ -0.98
CLSTN3-214ENST00000542663 LINC00575Q6W349 94 aa8.95□□□□□ -0.98
CLSTN3-214ENST00000542663 Q6ZQY7 126 aa8.95□□□□□ -0.98
CLSTN3-214ENST00000542663 TRAV13-2A0A0B4J235 113 aa8.94□□□□□ -0.98
CLSTN3-214ENST00000542663 OCIAD2Q56VL3 154 aa8.94□□□□□ -0.98
CLSTN3-214ENST00000542663 COX8AP10176 69 aa8.93□□□□□ -0.98
CLSTN3-214ENST00000542663 LST1O00453 97 aa8.92□□□□□ -0.98
CLSTN3-214ENST00000542663 hADV29S1A0JD25 119 aa8.89□□□□□ -0.99
CLSTN3-214ENST00000542663 KRTAP10-10P60014 251 aa8.89□□□□□ -0.99
CLSTN3-214ENST00000542663 PAM16Q9Y3D7 125 aa8.89□□□□□ -0.99
CLSTN3-214ENST00000542663 SYNE2Q8WXH0 6885 aaKnown RBP8.88□□□□□ -0.99
CLSTN3-214ENST00000542663 KRTAP16-1A8MUX0 517 aa8.88□□□□□ -0.99
CLSTN3-214ENST00000542663 DLEU1O43261 78 aa8.88□□□□□ -0.99
CLSTN3-214ENST00000542663 VAMP3Q15836 100 aa8.88□□□□□ -0.99
CLSTN3-214ENST00000542663 SPATA45Q537H7 98 aa8.88□□□□□ -0.99
CLSTN3-214ENST00000542663 HIST1H4GQ99525 98 aa8.88□□□□□ -0.99
CLSTN3-214ENST00000542663 C14orf144Q96I85 54 aa8.87□□□□□ -0.99
CLSTN3-214ENST00000542663 VAMP8Q9BV40 100 aa8.87□□□□□ -0.99
CLSTN3-214ENST00000542663 C12orf57Q99622 126 aa8.86□□□□□ -0.99
CLSTN3-214ENST00000542663 H3BUT2 72 aa8.85□□□□□ -0.99
CLSTN3-214ENST00000542663 FAM236DA0A1B0GTK5 79 aa8.83□□□□□ -1
CLSTN3-214ENST00000542663 FAM236CP0DP71 79 aa8.83□□□□□ -1
CLSTN3-214ENST00000542663 MPLKIPQ8TAP9 179 aa8.83□□□□□ -1
CLSTN3-214ENST00000542663 HIGD1BQ9P298 99 aa8.83□□□□□ -1
CLSTN3-214ENST00000542663 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP8.82□□□□□ -1
CLSTN3-214ENST00000542663 C2orf91Q6ZV80 131 aa8.81□□□□□ -1
CLSTN3-214ENST00000542663 SS18L2Q9UHA2 77 aa8.81□□□□□ -1
CLSTN3-214ENST00000542663 HRES1P13985 223 aa8.8□□□□□ -1
CLSTN3-214ENST00000542663 DSCR10P59022 87 aa8.8□□□□□ -1
CLSTN3-214ENST00000542663 KRTAP19-6Q3LI70 58 aa8.8□□□□□ -1
CLSTN3-214ENST00000542663 PPDPFLQ8WWR9 84 aa8.8□□□□□ -1
CLSTN3-214ENST00000542663 TMA7Q9Y2S6 64 aaKnown RBP8.8□□□□□ -1
CLSTN3-214ENST00000542663 SNHG12Q9BXW3 62 aa8.79□□□□□ -1
CLSTN3-214ENST00000542663 PYY3Q5JQD4 70 aa8.78□□□□□ -1
CLSTN3-214ENST00000542663 TEN1Q86WV5 123 aa8.75□□□□□ -1.01
CLSTN3-214ENST00000542663 RAB37Q96AX2 223 aa8.75□□□□□ -1.01
CLSTN3-214ENST00000542663 A0A0B4J2C4 111 aa8.74□□□□□ -1.01
CLSTN3-214ENST00000542663 BVES-AS1Q5T3Y7 98 aa8.74□□□□□ -1.01
CLSTN3-214ENST00000542663 RBM12B-AS1Q9P1G2 102 aa8.74□□□□□ -1.01
CLSTN3-214ENST00000542663 A0A087WSZ3 146 aa8.73□□□□□ -1.01
CLSTN3-214ENST00000542663 CEND1Q8N111 149 aa8.73□□□□□ -1.01
CLSTN3-214ENST00000542663 LINC00846Q9NV44 126 aa8.72□□□□□ -1.01
CLSTN3-214ENST00000542663 NOTCH2NLQ7Z3S9 236 aa8.71□□□□□ -1.02
CLSTN3-214ENST00000542663 TMEM238LA0A1B0GVL6 79 aa8.7□□□□□ -1.02
CLSTN3-214ENST00000542663 A6NJY4 79 aa8.7□□□□□ -1.02
CLSTN3-214ENST00000542663 FXYD2P54710 66 aa8.7□□□□□ -1.02
CLSTN3-214ENST00000542663 LINC00313P59037 77 aa8.67□□□□□ -1.02
CLSTN3-214ENST00000542663 KRTAP6-3Q3LI67 103 aa8.67□□□□□ -1.02
CLSTN3-214ENST00000542663 SIGMAR1Q99720 223 aa8.67□□□□□ -1.02
CLSTN3-214ENST00000542663 PRO1854Q9UHT4 67 aa8.67□□□□□ -1.02
CLSTN3-214ENST00000542663 NDUFV3P56181 108 aaKnown RBP8.66□□□□□ -1.02
CLSTN3-214ENST00000542663 HSD52Q0P140 79 aa8.66□□□□□ -1.02
CLSTN3-214ENST00000542663 H0YGX0 51 aa8.64□□□□□ -1.03
CLSTN3-214ENST00000542663 FAM218AQ96MZ4 157 aa8.64□□□□□ -1.03
CLSTN3-214ENST00000542663 UQCR10Q9UDW1 63 aa8.63□□□□□ -1.03
CLSTN3-214ENST00000542663 SNCGO76070 127 aa8.62□□□□□ -1.03
CLSTN3-214ENST00000542663 A0A1W2PNM2 257 aa8.61□□□□□ -1.03
CLSTN3-214ENST00000542663 K7ERJ3 54 aa8.6□□□□□ -1.03
CLSTN3-214ENST00000542663 H3BMG7 143 aa8.59□□□□□ -1.03
CLSTN3-214ENST00000542663 TRIAP1O43715 76 aa8.59□□□□□ -1.03
CLSTN3-214ENST00000542663 IGKV4-1P06312 121 aa8.59□□□□□ -1.03
CLSTN3-214ENST00000542663 A0A1B0GX51 115 aa8.57□□□□□ -1.04
CLSTN3-214ENST00000542663 MTURNQ8N3F0 131 aa8.55□□□□□ -1.04
CLSTN3-214ENST00000542663 PSMB2P49721 201 aa8.54□□□□□ -1.04
CLSTN3-214ENST00000542663 DEFB116Q30KQ4 102 aa8.53□□□□□ -1.04
CLSTN3-214ENST00000542663 GHRHP01286 108 aa8.52□□□□□ -1.05
CLSTN3-214ENST00000542663 A8MWP4 228 aa8.51□□□□□ -1.05
CLSTN3-214ENST00000542663 FABP2P12104 132 aa8.51□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 135.4 ms