RNA–Protein interactions for RNA: ENST00000539041.5

SMPDL3A-203, Transcript of sphingomyelin phosphodiesterase acid like 3A, humanhuman

TSL 2 BASIC

Gene SMPDL3A, Length 1,755 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPDL3A-203ENST00000539041 KRTAP13-1Q8IUC0 172 aa12.75□□□□□ -0.37
SMPDL3A-203ENST00000539041 SPRR4Q96PI1 79 aa12.75□□□□□ -0.37
SMPDL3A-203ENST00000539041 DNAH2Q9P225 4427 aa12.75□□□□□ -0.37
SMPDL3A-203ENST00000539041 SCXQ7RTU7 201 aa12.74□□□□□ -0.37
SMPDL3A-203ENST00000539041 IGLV8-61A0A075B6I0 122 aa12.74□□□□□ -0.37
SMPDL3A-203ENST00000539041 ALMS1Q8TCU4 4167 aa12.72□□□□□ -0.37
SMPDL3A-203ENST00000539041 PLAC8Q9NZF1 115 aa12.72□□□□□ -0.37
SMPDL3A-203ENST00000539041 IGFL1Q6UW32 110 aa12.71□□□□□ -0.38
SMPDL3A-203ENST00000539041 HECTD4Q9Y4D8 3996 aa12.7□□□□□ -0.38
SMPDL3A-203ENST00000539041 UQCRQO14949 82 aa12.69□□□□□ -0.38
SMPDL3A-203ENST00000539041 COX7CP15954 63 aa12.69□□□□□ -0.38
SMPDL3A-203ENST00000539041 TGP01266 2768 aa12.68□□□□□ -0.38
SMPDL3A-203ENST00000539041 CRYGAP11844 174 aa12.67□□□□□ -0.38
SMPDL3A-203ENST00000539041 BPY2O14599 106 aa12.66□□□□□ -0.38
SMPDL3A-203ENST00000539041 SERP2Q8N6R1 65 aa12.66□□□□□ -0.38
SMPDL3A-203ENST00000539041 A0A0G2JQZ4 141 aa12.64□□□□□ -0.39
SMPDL3A-203ENST00000539041 PSORS1C2Q9UIG4 136 aa12.64□□□□□ -0.39
SMPDL3A-203ENST00000539041 C9orf153Q5TBE3 101 aa12.62□□□□□ -0.39
SMPDL3A-203ENST00000539041 IGKV4-1P06312 121 aa12.61□□□□□ -0.39
SMPDL3A-203ENST00000539041 Q8N9L7 120 aa12.58□□□□□ -0.39
SMPDL3A-203ENST00000539041 KRTAP10-2P60368 255 aa12.58□□□□□ -0.4
SMPDL3A-203ENST00000539041 ZNF706Q9Y5V0 76 aaPredicted RBP12.56□□□□□ -0.4
SMPDL3A-203ENST00000539041 FRAS1Q86XX4 4008 aa12.55□□□□□ -0.4
SMPDL3A-203ENST00000539041 A0A087WSZ3 146 aa12.54□□□□□ -0.4
SMPDL3A-203ENST00000539041 LINC00483Q53H64 154 aa12.54□□□□□ -0.4
SMPDL3A-203ENST00000539041 SMIM20Q8N5G0 67 aa12.54□□□□□ -0.4
SMPDL3A-203ENST00000539041 ZNF861PO60384 105 aa12.53□□□□□ -0.4
SMPDL3A-203ENST00000539041 DNAH8Q96JB1 4490 aa12.53□□□□□ -0.4
SMPDL3A-203ENST00000539041 TRAV7A0A075B6U4 112 aa12.52□□□□□ -0.41
SMPDL3A-203ENST00000539041 DSCR10P59022 87 aa12.5□□□□□ -0.41
SMPDL3A-203ENST00000539041 FAM30AQ9NZY2 134 aa12.49□□□□□ -0.41
SMPDL3A-203ENST00000539041 SS18L2Q9UHA2 77 aa12.48□□□□□ -0.41
SMPDL3A-203ENST00000539041 SRRM2Q9UQ35 2752 aaKnown RBP12.47□□□□□ -0.41
SMPDL3A-203ENST00000539041 DNAH11Q96DT5 4516 aa12.47□□□□□ -0.41
SMPDL3A-203ENST00000539041 IGLV9-49A0A0B4J1Y8 123 aa12.47□□□□□ -0.41
SMPDL3A-203ENST00000539041 IGLV7-43P04211 117 aa12.47□□□□□ -0.41
SMPDL3A-203ENST00000539041 CIRBP-AS1Q8TBR5 109 aa12.47□□□□□ -0.41
SMPDL3A-203ENST00000539041 RPL37AP61513 92 aaKnown RBP12.46□□□□□ -0.42
SMPDL3A-203ENST00000539041 DNAH5Q8TE73 4624 aa12.45□□□□□ -0.42
SMPDL3A-203ENST00000539041 K7EQZ3 153 aa12.43□□□□□ -0.42
SMPDL3A-203ENST00000539041 Q6ZSA8 131 aa12.43□□□□□ -0.42
SMPDL3A-203ENST00000539041 KRTAP10-1P60331 282 aa12.43□□□□□ -0.42
SMPDL3A-203ENST00000539041 DEFB116Q30KQ4 102 aa12.41□□□□□ -0.42
SMPDL3A-203ENST00000539041 HYDINQ4G0P3 5121 aa12.4□□□□□ -0.42
SMPDL3A-203ENST00000539041 CYSTM1Q9H1C7 97 aa12.4□□□□□ -0.42
SMPDL3A-203ENST00000539041 C20orf197Q8N268 126 aa12.38□□□□□ -0.43
SMPDL3A-203ENST00000539041 PKD1P98161 4303 aa12.38□□□□□ -0.43
SMPDL3A-203ENST00000539041 MOBPQ13875 183 aa12.37□□□□□ -0.43
SMPDL3A-203ENST00000539041 LINC00472Q9H8W2 130 aa12.36□□□□□ -0.43
SMPDL3A-203ENST00000539041 ANAPC11Q9NYG5 84 aa12.36□□□□□ -0.43
SMPDL3A-203ENST00000539041 FAT2Q9NYQ8 4349 aa12.35□□□□□ -0.43
SMPDL3A-203ENST00000539041 OCR1Q9BZK8 76 aa12.35□□□□□ -0.43
SMPDL3A-203ENST00000539041 HCG22E2RYF7 251 aa12.33□□□□□ -0.44
SMPDL3A-203ENST00000539041 HRCT1Q6UXD1 115 aa12.3□□□□□ -0.44
SMPDL3A-203ENST00000539041 J3KT08 172 aa12.29□□□□□ -0.44
SMPDL3A-203ENST00000539041 KLKP1Q107X0 134 aa12.29□□□□□ -0.44
SMPDL3A-203ENST00000539041 LCE6AA0A183 80 aa12.28□□□□□ -0.44
SMPDL3A-203ENST00000539041 A8MWP4 228 aa12.28□□□□□ -0.44
SMPDL3A-203ENST00000539041 TMEM258P61165 79 aa12.28□□□□□ -0.44
SMPDL3A-203ENST00000539041 PRR15Q8IV56 129 aa12.27□□□□□ -0.45
SMPDL3A-203ENST00000539041 Q96NJ1 140 aa12.25□□□□□ -0.45
SMPDL3A-203ENST00000539041 SNURFQ9Y675 71 aa12.25□□□□□ -0.45
SMPDL3A-203ENST00000539041 LINC00336Q6ZUF6 198 aa12.23□□□□□ -0.45
SMPDL3A-203ENST00000539041 WFDC13Q8IUB5 93 aa12.23□□□□□ -0.45
SMPDL3A-203ENST00000539041 TMEM254Q8TBM7 123 aa12.23□□□□□ -0.45
SMPDL3A-203ENST00000539041 SACSQ9NZJ4 4579 aa12.22□□□□□ -0.45
SMPDL3A-203ENST00000539041 SSBP3-AS1Q7Z2R9 100 aa12.2□□□□□ -0.46
SMPDL3A-203ENST00000539041 KRTAP29-1A8MX34 341 aaPredicted RBP12.19□□□□□ -0.46
SMPDL3A-203ENST00000539041 H7BZZ5 65 aa12.19□□□□□ -0.46
SMPDL3A-203ENST00000539041 NDUFB1O75438 58 aa12.19□□□□□ -0.46
SMPDL3A-203ENST00000539041 CASC2Q6XLA1 102 aa12.18□□□□□ -0.46
SMPDL3A-203ENST00000539041 A0A0U1RQV1 116 aa12.17□□□□□ -0.46
SMPDL3A-203ENST00000539041 CD164Q04900 197 aa12.17□□□□□ -0.46
SMPDL3A-203ENST00000539041 NDUFC1O43677 76 aa12.16□□□□□ -0.46
SMPDL3A-203ENST00000539041 FAM229BQ4G0N7 80 aa12.14□□□□□ -0.47
SMPDL3A-203ENST00000539041 MMP24-AS1A0A0U1RRL7 71 aa12.13□□□□□ -0.47
SMPDL3A-203ENST00000539041 LRP1BQ9NZR2 4599 aa12.11□□□□□ -0.47
SMPDL3A-203ENST00000539041 A0A087X002 238 aa12.1□□□□□ -0.47
SMPDL3A-203ENST00000539041 FAM236DA0A1B0GTK5 79 aa12.1□□□□□ -0.47
SMPDL3A-203ENST00000539041 A0A1B0GVY2 172 aa12.1□□□□□ -0.47
SMPDL3A-203ENST00000539041 FAM236CP0DP71 79 aa12.1□□□□□ -0.47
SMPDL3A-203ENST00000539041 C5orf47Q569G3 176 aa12.1□□□□□ -0.47
SMPDL3A-203ENST00000539041 KRTAP13-2Q52LG2 175 aa12.09□□□□□ -0.47
SMPDL3A-203ENST00000539041 CDK2AP2O75956 126 aa12.08□□□□□ -0.48
SMPDL3A-203ENST00000539041 A0A1B0GVX0 72 aa12.07□□□□□ -0.48
SMPDL3A-203ENST00000539041 KRTAP1-4P0C5Y4 121 aa12.06□□□□□ -0.48
SMPDL3A-203ENST00000539041 hDV103S1A0JD37 113 aa12.05□□□□□ -0.48
SMPDL3A-203ENST00000539041 C8orf17Q9NRJ1 99 aa12.05□□□□□ -0.48
SMPDL3A-203ENST00000539041 RPS28P62857 69 aaKnown RBP12.03□□□□□ -0.48
SMPDL3A-203ENST00000539041 ASB16-AS1Q495Z4 193 aa12.03□□□□□ -0.48
SMPDL3A-203ENST00000539041 IGHV6-1A0A0B4J1U7 121 aa12.02□□□□□ -0.48
SMPDL3A-203ENST00000539041 ZCCHC13Q8WW36 166 aaKnown RBP12.02□□□□□ -0.49
SMPDL3A-203ENST00000539041 SPINK6Q6UWN8 80 aa12□□□□□ -0.49
SMPDL3A-203ENST00000539041 MP68P56378 58 aa11.99□□□□□ -0.49
SMPDL3A-203ENST00000539041 ATP5EP56381 51 aaPredicted RBP11.99□□□□□ -0.49
SMPDL3A-203ENST00000539041 VPS13BQ7Z7G8 4022 aa11.96□□□□□ -0.49
SMPDL3A-203ENST00000539041 H0Y9P7 68 aa11.95□□□□□ -0.5
SMPDL3A-203ENST00000539041 PLA2G1BP04054 148 aaKnown RBP11.95□□□□□ -0.5
SMPDL3A-203ENST00000539041 Q5XG85 94 aa11.95□□□□□ -0.5
SMPDL3A-203ENST00000539041 PKHD1P08F94 4074 aa11.95□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms