RNA–Protein interactions for RNA: ENST00000534556.1

USH1C-210, Transcript of USH1 protein network component harmonin, humanhuman

TSL 3

Gene USH1C, Length 244 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-210ENST00000534556 HIGD1BQ9P298 99 aa2.76□□□□□ -1.97
USH1C-210ENST00000534556 LAMTOR3Q9UHA4 124 aa2.76□□□□□ -1.97
USH1C-210ENST00000534556 C9orf92A6NGG3 77 aa2.75□□□□□ -1.97
USH1C-210ENST00000534556 CD164Q04900 197 aa2.75□□□□□ -1.97
USH1C-210ENST00000534556 COPS9Q8WXC6 57 aa2.75□□□□□ -1.97
USH1C-210ENST00000534556 PRO1933Q9H354 126 aa2.75□□□□□ -1.97
USH1C-210ENST00000534556 IGLV8-61A0A075B6I0 122 aa2.74□□□□□ -1.97
USH1C-210ENST00000534556 hADV29S1A0JD25 119 aa2.74□□□□□ -1.97
USH1C-210ENST00000534556 Q5XG85 94 aa2.74□□□□□ -1.97
USH1C-210ENST00000534556 SLC25A34Q6PIV7 304 aa2.74□□□□□ -1.97
USH1C-210ENST00000534556 IGFL1Q6UW32 110 aa2.74□□□□□ -1.97
USH1C-210ENST00000534556 CEND1Q8N111 149 aa2.74□□□□□ -1.97
USH1C-210ENST00000534556 VAMP8Q9BV40 100 aa2.74□□□□□ -1.97
USH1C-210ENST00000534556 TMA7Q9Y2S6 64 aaKnown RBP2.74□□□□□ -1.97
USH1C-210ENST00000534556 A0A0B4J2C4 111 aa2.73□□□□□ -1.97
USH1C-210ENST00000534556 H3BUT2 72 aa2.72□□□□□ -1.97
USH1C-210ENST00000534556 K7ERJ3 54 aa2.72□□□□□ -1.97
USH1C-210ENST00000534556 OCIAD2Q56VL3 154 aa2.72□□□□□ -1.97
USH1C-210ENST00000534556 PCOTHQ58A44 107 aa2.72□□□□□ -1.97
USH1C-210ENST00000534556 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP2.72□□□□□ -1.97
USH1C-210ENST00000534556 LIMD2Q9BT23 127 aa2.72□□□□□ -1.97
USH1C-210ENST00000534556 TRIAP1O43715 76 aa2.71□□□□□ -1.98
USH1C-210ENST00000534556 VAMP3Q15836 100 aa2.71□□□□□ -1.98
USH1C-210ENST00000534556 CLEC2BQ92478 149 aa2.71□□□□□ -1.98
USH1C-210ENST00000534556 NHP2Q9NX24 153 aaKnown RBP2.71□□□□□ -1.98
USH1C-210ENST00000534556 PRO1854Q9UHT4 67 aa2.71□□□□□ -1.98
USH1C-210ENST00000534556 TRBV7-7A0A0K0K1E9 115 aa2.7□□□□□ -1.98
USH1C-210ENST00000534556 SEC61BP60468 96 aaKnown RBP2.7□□□□□ -1.98
USH1C-210ENST00000534556 BVES-AS1Q5T3Y7 98 aa2.7□□□□□ -1.98
USH1C-210ENST00000534556 RAB37Q96AX2 223 aa2.7□□□□□ -1.98
USH1C-210ENST00000534556 Q96NJ1 140 aa2.7□□□□□ -1.98
USH1C-210ENST00000534556 CRCT1Q9UGL9 99 aa2.7□□□□□ -1.98
USH1C-210ENST00000534556 A0A1W2PNM2 257 aa2.69□□□□□ -1.98
USH1C-210ENST00000534556 NDUFV3P56181 108 aaKnown RBP2.69□□□□□ -1.98
USH1C-210ENST00000534556 H0YGX0 51 aa2.68□□□□□ -1.98
USH1C-210ENST00000534556 RPL37P61927 97 aaKnown RBP2.68□□□□□ -1.98
USH1C-210ENST00000534556 HSD52Q0P140 79 aa2.68□□□□□ -1.98
USH1C-210ENST00000534556 Q6JHZ5 121 aa2.68□□□□□ -1.98
USH1C-210ENST00000534556 PPDPFLQ8WWR9 84 aa2.68□□□□□ -1.98
USH1C-210ENST00000534556 F8WEM9 126 aa2.67□□□□□ -1.98
USH1C-210ENST00000534556 MT1HP80294 61 aa2.67□□□□□ -1.98
USH1C-210ENST00000534556 Q6Q795 121 aa2.67□□□□□ -1.98
USH1C-210ENST00000534556 SNHG12Q9BXW3 62 aa2.67□□□□□ -1.98
USH1C-210ENST00000534556 A0A0U1RQV1 116 aa2.66□□□□□ -1.98
USH1C-210ENST00000534556 A0A1B0GV72 72 aa2.66□□□□□ -1.98
USH1C-210ENST00000534556 H3BMG7 143 aa2.66□□□□□ -1.98
USH1C-210ENST00000534556 TCL1BO95988 128 aa2.66□□□□□ -1.98
USH1C-210ENST00000534556 UQCR10Q9UDW1 63 aa2.66□□□□□ -1.98
USH1C-210ENST00000534556 A0A087WSZ3 146 aa2.65□□□□□ -1.99
USH1C-210ENST00000534556 TMEM238LA0A1B0GVL6 79 aa2.65□□□□□ -1.99
USH1C-210ENST00000534556 A0A1B0GX51 115 aa2.65□□□□□ -1.99
USH1C-210ENST00000534556 A6NJY4 79 aa2.65□□□□□ -1.99
USH1C-210ENST00000534556 KRTAP16-1A8MUX0 517 aa2.65□□□□□ -1.99
USH1C-210ENST00000534556 FABP2P12104 132 aa2.65□□□□□ -1.99
USH1C-210ENST00000534556 NOTCH2NLQ7Z3S9 236 aa2.65□□□□□ -1.99
USH1C-210ENST00000534556 TEN1Q86WV5 123 aa2.65□□□□□ -1.99
USH1C-210ENST00000534556 OBSCN-AS1Q96MR7 158 aa2.65□□□□□ -1.99
USH1C-210ENST00000534556 NAA38Q9BRA0 125 aaKnown RBP2.65□□□□□ -1.99
USH1C-210ENST00000534556 LOC105371267A0A1B0GV96 52 aa2.64□□□□□ -1.99
USH1C-210ENST00000534556 LST1O00453 97 aa2.64□□□□□ -1.99
USH1C-210ENST00000534556 A8MUU9 505 aa2.63□□□□□ -1.99
USH1C-210ENST00000534556 LORP23490 312 aaPredicted RBP2.63□□□□□ -1.99
USH1C-210ENST00000534556 PSMB2P49721 201 aa2.63□□□□□ -1.99
USH1C-210ENST00000534556 DSCR10P59022 87 aa2.63□□□□□ -1.99
USH1C-210ENST00000534556 DEFB116Q30KQ4 102 aa2.63□□□□□ -1.99
USH1C-210ENST00000534556 TRBV7-4A0A0J9YYF1 115 aa2.62□□□□□ -1.99
USH1C-210ENST00000534556 Q75L30 129 aa2.62□□□□□ -1.99
USH1C-210ENST00000534556 C20orf166-AS1Q96NR2 134 aa2.62□□□□□ -1.99
USH1C-210ENST00000534556 LINC00472Q9H8W2 130 aa2.62□□□□□ -1.99
USH1C-210ENST00000534556 ORMDL1Q9P0S3 153 aa2.62□□□□□ -1.99
USH1C-210ENST00000534556 TRACP01848 142 aa2.61□□□□□ -1.99
USH1C-210ENST00000534556 KRTAP10-6P60371 365 aaPredicted RBP2.61□□□□□ -1.99
USH1C-210ENST00000534556 LCE2DQ5TA82 110 aaPredicted RBP2.61□□□□□ -1.99
USH1C-210ENST00000534556 ANKRD29Q8N6D5 301 aa2.61□□□□□ -1.99
USH1C-210ENST00000534556 KRTAP9-7A8MTY7 169 aa2.6□□□□□ -1.99
USH1C-210ENST00000534556 TMEM256-PLSCR3K7ERE1 68 aa2.6□□□□□ -1.99
USH1C-210ENST00000534556 DNAL4O96015 105 aa2.6□□□□□ -1.99
USH1C-210ENST00000534556 CCKP06307 115 aa2.6□□□□□ -1.99
USH1C-210ENST00000534556 BAALC-AS2P0C853 105 aa2.6□□□□□ -1.99
USH1C-210ENST00000534556 SMIM6P0DI80 62 aa2.6□□□□□ -1.99
USH1C-210ENST00000534556 UBE2V1Q13404 147 aa2.6□□□□□ -1.99
USH1C-210ENST00000534556 SS18L2Q9UHA2 77 aa2.6□□□□□ -1.99
USH1C-210ENST00000534556 SNCGO76070 127 aa2.59□□□□□ -1.99
USH1C-210ENST00000534556 IGKV4-1P06312 121 aa2.59□□□□□ -1.99
USH1C-210ENST00000534556 SCGB1C2P0DMR2 95 aa2.59□□□□□ -1.99
USH1C-210ENST00000534556 COX6CP09669 75 aa2.58□□□□□ -2
USH1C-210ENST00000534556 SIGMAR1Q99720 223 aa2.58□□□□□ -2
USH1C-210ENST00000534556 TAX1BP3O14907 124 aa2.57□□□□□ -2
USH1C-210ENST00000534556 LINC00313P59037 77 aa2.57□□□□□ -2
USH1C-210ENST00000534556 RBM3P98179 157 aaKnown RBP2.57□□□□□ -2
USH1C-210ENST00000534556 ATP11AUNQ6ZP68 121 aa2.57□□□□□ -2
USH1C-210ENST00000534556 Q6ZQT0 140 aa2.57□□□□□ -2
USH1C-210ENST00000534556 VPS25Q9BRG1 176 aa2.57□□□□□ -2
USH1C-210ENST00000534556 IGHV6-1A0A0B4J1U7 121 aa2.56□□□□□ -2
USH1C-210ENST00000534556 H3BQ85 93 aa2.56□□□□□ -2
USH1C-210ENST00000534556 M0R143 59 aa2.56□□□□□ -2
USH1C-210ENST00000534556 GHRHP01286 108 aa2.56□□□□□ -2
USH1C-210ENST00000534556 HRES1P13985 223 aa2.56□□□□□ -2
USH1C-210ENST00000534556 MTURNQ8N3F0 131 aa2.56□□□□□ -2
USH1C-210ENST00000534556 MPLKIPQ8TAP9 179 aa2.56□□□□□ -2
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms