RNA–Protein interactions for RNA: ENST00000529637.5

USP48-213, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 3,228 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-213ENST00000529637 DHRS4-AS1Q9P1J3 65 aa9.03□□□□□ -0.96
USP48-213ENST00000529637 KRTAP7-1Q8IUC3 87 aa9.03□□□□□ -0.96
USP48-213ENST00000529637 CYP4F30PQ9H0H9 118 aa9.03□□□□□ -0.96
USP48-213ENST00000529637 MRPL55Q7Z7F7 128 aaKnown RBP9.02□□□□□ -0.97
USP48-213ENST00000529637 IGLV1-50A0A075B6I6 118 aa9.01□□□□□ -0.97
USP48-213ENST00000529637 K7EIL1 84 aa9□□□□□ -0.97
USP48-213ENST00000529637 TLX1NBP0CAT3 122 aa9□□□□□ -0.97
USP48-213ENST00000529637 TENM2Q9NT68 2774 aa9□□□□□ -0.97
USP48-213ENST00000529637 A0A1B0GW54 56 aa8.99□□□□□ -0.97
USP48-213ENST00000529637 RPL37AP61513 92 aaKnown RBP8.99□□□□□ -0.97
USP48-213ENST00000529637 Q5VV11 94 aa8.99□□□□□ -0.97
USP48-213ENST00000529637 CSMD3Q7Z407 3707 aa8.99□□□□□ -0.97
USP48-213ENST00000529637 UBE2DNLQ8IWF7 75 aa8.99□□□□□ -0.97
USP48-213ENST00000529637 LINC00208Q96KT6 92 aa8.99□□□□□ -0.97
USP48-213ENST00000529637 LINC00476Q8WZB0 136 aa8.98□□□□□ -0.97
USP48-213ENST00000529637 SPRR1AP35321 89 aa8.97□□□□□ -0.97
USP48-213ENST00000529637 PLA2G2DQ9UNK4 145 aa8.96□□□□□ -0.97
USP48-213ENST00000529637 REG3GQ6UW15 175 aa8.95□□□□□ -0.98
USP48-213ENST00000529637 B9D2Q9BPU9 175 aa8.95□□□□□ -0.98
USP48-213ENST00000529637 PRLHP81277 87 aa8.95□□□□□ -0.98
USP48-213ENST00000529637 IGFL1Q6UW32 110 aa8.95□□□□□ -0.98
USP48-213ENST00000529637 A0A087WSZ3 146 aa8.93□□□□□ -0.98
USP48-213ENST00000529637 MP68P56378 58 aa8.93□□□□□ -0.98
USP48-213ENST00000529637 IGLV5-37A0A075B6J1 123 aa8.92□□□□□ -0.98
USP48-213ENST00000529637 A0A096LNI7 61 aa8.92□□□□□ -0.98
USP48-213ENST00000529637 NDUFB1O75438 58 aa8.92□□□□□ -0.98
USP48-213ENST00000529637 Q8N9P0 234 aaPredicted RBP8.92□□□□□ -0.98
USP48-213ENST00000529637 KRTAP1-5Q9BYS1 174 aa8.92□□□□□ -0.98
USP48-213ENST00000529637 CHKB-CPT1BH3BT56 60 aa8.91□□□□□ -0.98
USP48-213ENST00000529637 C16orf90A8MZG2 172 aa8.9□□□□□ -0.98
USP48-213ENST00000529637 CMYA5Q8N3K9 4069 aa8.9□□□□□ -0.98
USP48-213ENST00000529637 DNAH1Q9P2D7 4330 aa8.89□□□□□ -0.99
USP48-213ENST00000529637 CHTF8P0CG12 524 aa8.89□□□□□ -0.99
USP48-213ENST00000529637 DNAH10Q8IVF4 4471 aa8.89□□□□□ -0.99
USP48-213ENST00000529637 KRTAP29-1A8MX34 341 aaPredicted RBP8.88□□□□□ -0.99
USP48-213ENST00000529637 H0Y9P7 68 aa8.88□□□□□ -0.99
USP48-213ENST00000529637 PRR15LQ9BU68 103 aa8.88□□□□□ -0.99
USP48-213ENST00000529637 SPTSSBQ8NFR3 76 aa8.87□□□□□ -0.99
USP48-213ENST00000529637 COL7A1Q02388 2944 aa8.85□□□□□ -0.99
USP48-213ENST00000529637 LCA10Q71F78 164 aa8.85□□□□□ -0.99
USP48-213ENST00000529637 CNBPP62633 177 aaKnown RBP8.84□□□□□ -0.99
USP48-213ENST00000529637 CASC2Q6XLA1 102 aa8.84□□□□□ -0.99
USP48-213ENST00000529637 PHF5AQ7RTV0 110 aaKnown RBP8.84□□□□□ -0.99
USP48-213ENST00000529637 UBE2AP49459 152 aa8.83□□□□□ -1
USP48-213ENST00000529637 HUWE1Q7Z6Z7 4374 aaKnown RBP8.83□□□□□ -1
USP48-213ENST00000529637 SPANXA2-OT1Q8N9U9 137 aa8.81□□□□□ -1
USP48-213ENST00000529637 LIMD2Q9BT23 127 aa8.81□□□□□ -1
USP48-213ENST00000529637 CD164Q04900 197 aa8.8□□□□□ -1
USP48-213ENST00000529637 C9orf163Q8N9P6 203 aa8.8□□□□□ -1
USP48-213ENST00000529637 LYSTQ99698 3801 aa8.79□□□□□ -1
USP48-213ENST00000529637 DNAH3Q8TD57 4116 aa8.79□□□□□ -1
USP48-213ENST00000529637 C14orf177Q52M58 125 aa8.78□□□□□ -1
USP48-213ENST00000529637 COA5Q86WW8 74 aa8.78□□□□□ -1
USP48-213ENST00000529637 A6NED7 52 aa8.77□□□□□ -1.01
USP48-213ENST00000529637 APLNQ9ULZ1 77 aa8.77□□□□□ -1.01
USP48-213ENST00000529637 KRTAP11-1Q8IUC1 163 aa8.76□□□□□ -1.01
USP48-213ENST00000529637 PCOTHQ58A44 107 aa8.76□□□□□ -1.01
USP48-213ENST00000529637 KTN1-AS1Q86SY8 53 aa8.76□□□□□ -1.01
USP48-213ENST00000529637 IGLV8-61A0A075B6I0 122 aa8.75□□□□□ -1.01
USP48-213ENST00000529637 RBM12B-AS1Q9P1G2 102 aa8.75□□□□□ -1.01
USP48-213ENST00000529637 LINC00472Q9H8W2 130 aa8.74□□□□□ -1.01
USP48-213ENST00000529637 A8MWP4 228 aa8.74□□□□□ -1.01
USP48-213ENST00000529637 Q75L30 129 aa8.73□□□□□ -1.01
USP48-213ENST00000529637 H0Y9J4 135 aa8.73□□□□□ -1.01
USP48-213ENST00000529637 H3BPC8 53 aa8.72□□□□□ -1.01
USP48-213ENST00000529637 SPAG11AQ6PDA7 123 aa8.72□□□□□ -1.01
USP48-213ENST00000529637 MDFIQ99750 246 aa8.71□□□□□ -1.01
USP48-213ENST00000529637 LOC101927531A0A1B0GV80 90 aa8.71□□□□□ -1.02
USP48-213ENST00000529637 ATP11AUNQ6ZP68 121 aa8.71□□□□□ -1.02
USP48-213ENST00000529637 DNAH9Q9NYC9 4486 aa8.71□□□□□ -1.02
USP48-213ENST00000529637 IGLV7-46A0A075B6I9 117 aa8.7□□□□□ -1.02
USP48-213ENST00000529637 NBDYA0A0U1RRE5 68 aa8.7□□□□□ -1.02
USP48-213ENST00000529637 A6NN06 94 aa8.7□□□□□ -1.02
USP48-213ENST00000529637 MMP24-AS1A0A0U1RRL7 71 aa8.69□□□□□ -1.02
USP48-213ENST00000529637 PANO1I0J062 215 aa8.69□□□□□ -1.02
USP48-213ENST00000529637 IGLV9-49A0A0B4J1Y8 123 aa8.67□□□□□ -1.02
USP48-213ENST00000529637 CDC42SE1Q9NRR8 79 aa8.65□□□□□ -1.03
USP48-213ENST00000529637 SPINK7P58062 85 aa8.64□□□□□ -1.03
USP48-213ENST00000529637 MOBPQ13875 183 aa8.64□□□□□ -1.03
USP48-213ENST00000529637 NUPR2A6NF83 97 aa8.63□□□□□ -1.03
USP48-213ENST00000529637 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP8.62□□□□□ -1.03
USP48-213ENST00000529637 PLAC8Q9NZF1 115 aa8.6□□□□□ -1.03
USP48-213ENST00000529637 LINC01558Q9Y6Z2 57 aa8.6□□□□□ -1.03
USP48-213ENST00000529637 HRES1P13985 223 aa8.59□□□□□ -1.03
USP48-213ENST00000529637 TGP01266 2768 aa8.58□□□□□ -1.04
USP48-213ENST00000529637 DNAH7Q8WXX0 4024 aa8.58□□□□□ -1.04
USP48-213ENST00000529637 NDUFS5O43920 106 aa8.58□□□□□ -1.04
USP48-213ENST00000529637 SPRR1BP22528 89 aa8.58□□□□□ -1.04
USP48-213ENST00000529637 Q96NJ1 140 aa8.58□□□□□ -1.04
USP48-213ENST00000529637 Q6ZRN7 208 aaPredicted RBP8.57□□□□□ -1.04
USP48-213ENST00000529637 PLECQ15149 4684 aaKnown RBP8.56□□□□□ -1.04
USP48-213ENST00000529637 ANAPC11Q9NYG5 84 aa8.55□□□□□ -1.04
USP48-213ENST00000529637 ASB16-AS1Q495Z4 193 aa8.54□□□□□ -1.04
USP48-213ENST00000529637 C7orf65Q6ZTY9 151 aa8.54□□□□□ -1.04
USP48-213ENST00000529637 A0A087WTM6 91 aa8.54□□□□□ -1.04
USP48-213ENST00000529637 SPACA4Q8TDM5 124 aa8.54□□□□□ -1.04
USP48-213ENST00000529637 IGHV6-1A0A0B4J1U7 121 aa8.53□□□□□ -1.04
USP48-213ENST00000529637 A0A087X002 238 aa8.53□□□□□ -1.04
USP48-213ENST00000529637 Q6ZR54 194 aa8.53□□□□□ -1.04
USP48-213ENST00000529637 NOTCH2NLQ7Z3S9 236 aa8.53□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 184.6 ms