RNA–Protein interactions for RNA: ENST00000528922.1

CD44-230, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 1,319 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-230ENST00000528922 CAMK2N2Q96S95 79 aa3.15□□□□□ -1.91
CD44-230ENST00000528922 C11orf68Q9H3H3 251 aaKnown RBP3.15□□□□□ -1.91
CD44-230ENST00000528922 PKIGQ9Y2B9 76 aa3.15□□□□□ -1.91
CD44-230ENST00000528922 SERP1Q9Y6X1 66 aa3.15□□□□□ -1.91
CD44-230ENST00000528922 RYR1P21817 5038 aa3.14□□□□□ -1.91
CD44-230ENST00000528922 TRBV7-4A0A0J9YYF1 115 aa3.14□□□□□ -1.91
CD44-230ENST00000528922 FAM236DA0A1B0GTK5 79 aa3.14□□□□□ -1.91
CD44-230ENST00000528922 FAM236CP0DP71 79 aa3.14□□□□□ -1.91
CD44-230ENST00000528922 FUSP35637 526 aaKnown RBP eCLIP3.14□□□□□ -1.91
CD44-230ENST00000528922 HAMPP81172 84 aa3.14□□□□□ -1.91
CD44-230ENST00000528922 ENHOQ6UWT2 76 aa3.14□□□□□ -1.91
CD44-230ENST00000528922 Q6ZQY7 126 aa3.14□□□□□ -1.91
CD44-230ENST00000528922 TRRAPQ9Y4A5 3859 aa3.13□□□□□ -1.91
CD44-230ENST00000528922 NREPQ16612 68 aa3.13□□□□□ -1.91
CD44-230ENST00000528922 DEFB135Q30KP9 77 aa3.13□□□□□ -1.91
CD44-230ENST00000528922 FAM19A5Q7Z5A7 132 aaPredicted RBP3.13□□□□□ -1.91
CD44-230ENST00000528922 NKAPP1Q8N9T2 125 aa3.13□□□□□ -1.91
CD44-230ENST00000528922 WFDC9Q8NEX5 89 aa3.13□□□□□ -1.91
CD44-230ENST00000528922 WFDC10AQ9H1F0 79 aa3.13□□□□□ -1.91
CD44-230ENST00000528922 KLK12Q9UKR0 248 aa3.13□□□□□ -1.91
CD44-230ENST00000528922 IGLV10-54A0A075B6I4 117 aa3.12□□□□□ -1.91
CD44-230ENST00000528922 SMIM26A0A096LP01 95 aa3.12□□□□□ -1.91
CD44-230ENST00000528922 CLPSL2Q6UWE3 100 aa3.12□□□□□ -1.91
CD44-230ENST00000528922 UNQ6190/PRO20217Q6UXQ8 127 aa3.12□□□□□ -1.91
CD44-230ENST00000528922 Q8NAQ8 132 aa3.12□□□□□ -1.91
CD44-230ENST00000528922 C7orf33Q8WU49 177 aa3.12□□□□□ -1.91
CD44-230ENST00000528922 A0A087WVE0 104 aa3.11□□□□□ -1.91
CD44-230ENST00000528922 A0A096LPF7 62 aa3.11□□□□□ -1.91
CD44-230ENST00000528922 TLX1NBP0CAT3 122 aa3.11□□□□□ -1.91
CD44-230ENST00000528922 LINC01556Q5JQF7 62 aa3.11□□□□□ -1.91
CD44-230ENST00000528922 C20orf197Q8N268 126 aa3.11□□□□□ -1.91
CD44-230ENST00000528922 KCNQ1DNQ9H478 68 aa3.11□□□□□ -1.91
CD44-230ENST00000528922 ZANQ9Y493 2812 aa3.1□□□□□ -1.91
CD44-230ENST00000528922 BPY2O14599 106 aa3.1□□□□□ -1.91
CD44-230ENST00000528922 SYCNQ0VAF6 134 aa3.1□□□□□ -1.91
CD44-230ENST00000528922 C6orf48Q9UBA6 75 aa3.1□□□□□ -1.91
CD44-230ENST00000528922 VWFP04275 2813 aa3.1□□□□□ -1.91
CD44-230ENST00000528922 RYR2Q92736 4967 aa3.09□□□□□ -1.91
CD44-230ENST00000528922 IGLV5-48A0A075B6I7 105 aa3.09□□□□□ -1.91
CD44-230ENST00000528922 F8WEM9 126 aa3.09□□□□□ -1.91
CD44-230ENST00000528922 NDUFB1O75438 58 aa3.09□□□□□ -1.91
CD44-230ENST00000528922 HTN3P15516 51 aa3.09□□□□□ -1.91
CD44-230ENST00000528922 C9orf116Q5BN46 136 aaPredicted RBP3.09□□□□□ -1.91
CD44-230ENST00000528922 KPRPQ5T749 579 aaPredicted RBP3.09□□□□□ -1.91
CD44-230ENST00000528922 FAM19A1Q7Z5A9 133 aa3.09□□□□□ -1.91
CD44-230ENST00000528922 ETDCA0A1B0GVM5 59 aa3.08□□□□□ -1.92
CD44-230ENST00000528922 H7BZZ5 65 aa3.08□□□□□ -1.92
CD44-230ENST00000528922 PRR3P79522 188 aaKnown RBP3.08□□□□□ -1.92
CD44-230ENST00000528922 TMEM254Q8TBM7 123 aa3.08□□□□□ -1.92
CD44-230ENST00000528922 UBR4Q5T4S7 5183 aa3.08□□□□□ -1.92
CD44-230ENST00000528922 HERC2O95714 4834 aa3.07□□□□□ -1.92
CD44-230ENST00000528922 IGKV2D-24A0A075B6R9 120 aa3.07□□□□□ -1.92
CD44-230ENST00000528922 V9GYY9 64 aa3.07□□□□□ -1.92
CD44-230ENST00000528922 TRAV10A0A0B4J240 114 aa3.06□□□□□ -1.92
CD44-230ENST00000528922 H3BPC8 53 aa3.06□□□□□ -1.92
CD44-230ENST00000528922 Q6ZRU5 148 aa3.06□□□□□ -1.92
CD44-230ENST00000528922 Q6ZRX8 168 aa3.06□□□□□ -1.92
CD44-230ENST00000528922 XAGE1AQ9HD64 81 aa3.06□□□□□ -1.92
CD44-230ENST00000528922 DEFB131BA0A096LNP1 70 aa3.05□□□□□ -1.92
CD44-230ENST00000528922 DEFB4AO15263 64 aa3.05□□□□□ -1.92
CD44-230ENST00000528922 PRO0628Q9UI54 55 aa3.05□□□□□ -1.92
CD44-230ENST00000528922 SPRR1AP35321 89 aa3.04□□□□□ -1.92
CD44-230ENST00000528922 MP68P56378 58 aa3.04□□□□□ -1.92
CD44-230ENST00000528922 C1orf137Q5JT78 98 aa3.04□□□□□ -1.92
CD44-230ENST00000528922 C15orf56Q8N910 161 aa3.04□□□□□ -1.92
CD44-230ENST00000528922 SPRR4Q96PI1 79 aa3.04□□□□□ -1.92
CD44-230ENST00000528922 TENM3Q9P273 2699 aa3.04□□□□□ -1.92
CD44-230ENST00000528922 IGLV1-50A0A075B6I6 118 aa3.03□□□□□ -1.92
CD44-230ENST00000528922 IGKV4-1P06312 121 aa3.03□□□□□ -1.92
CD44-230ENST00000528922 KRTAP13-3Q3SY46 172 aa3.03□□□□□ -1.92
CD44-230ENST00000528922 KRTAP26-1Q6PEX3 210 aa3.03□□□□□ -1.92
CD44-230ENST00000528922 WFDC10BQ8IUB3 73 aa3.03□□□□□ -1.92
CD44-230ENST00000528922 DYNC2H1Q8NCM8 4307 aaKnown RBP3.02□□□□□ -1.93
CD44-230ENST00000528922 A0A0U1RQV1 116 aa3.02□□□□□ -1.93
CD44-230ENST00000528922 ESRGQ1W209 222 aa3.02□□□□□ -1.93
CD44-230ENST00000528922 MRPL55Q7Z7F7 128 aaKnown RBP3.02□□□□□ -1.93
CD44-230ENST00000528922 Q8NDZ9 215 aa3.02□□□□□ -1.93
CD44-230ENST00000528922 TM2D3Q9BRN9 247 aa3.02□□□□□ -1.93
CD44-230ENST00000528922 LINC00474Q9P2X8 69 aa3.02□□□□□ -1.93
CD44-230ENST00000528922 LCE6AA0A183 80 aa3.01□□□□□ -1.93
CD44-230ENST00000528922 hDV103S1A0JD37 113 aa3.01□□□□□ -1.93
CD44-230ENST00000528922 HCG22E2RYF7 251 aa3.01□□□□□ -1.93
CD44-230ENST00000528922 RPL37AP61513 92 aaKnown RBP3.01□□□□□ -1.93
CD44-230ENST00000528922 UBE2BP63146 152 aa3.01□□□□□ -1.93
CD44-230ENST00000528922 Q5XG85 94 aa3.01□□□□□ -1.93
CD44-230ENST00000528922 SNURFQ9Y675 71 aa3.01□□□□□ -1.93
CD44-230ENST00000528922 PRB2P02812 416 aaPredicted RBP3□□□□□ -1.93
CD44-230ENST00000528922 HRCT1Q6UXD1 115 aa3□□□□□ -1.93
CD44-230ENST00000528922 DEFB105AQ8NG35 78 aa3□□□□□ -1.93
CD44-230ENST00000528922 CYP4F30PQ9H0H9 118 aa3□□□□□ -1.93
CD44-230ENST00000528922 CYSTM1Q9H1C7 97 aa3□□□□□ -1.93
CD44-230ENST00000528922 TENM2Q9NT68 2774 aa3□□□□□ -1.93
CD44-230ENST00000528922 SACSQ9NZJ4 4579 aa3□□□□□ -1.93
CD44-230ENST00000528922 C16orf90A8MZG2 172 aa2.99□□□□□ -1.93
CD44-230ENST00000528922 KRTAP4-16G5E9R7 235 aaPredicted RBP2.99□□□□□ -1.93
CD44-230ENST00000528922 C3orf84H3BNL1 204 aa2.99□□□□□ -1.93
CD44-230ENST00000528922 RTL8CO15255 209 aa2.99□□□□□ -1.93
CD44-230ENST00000528922 C4orf26Q17RF5 130 aa2.99□□□□□ -1.93
CD44-230ENST00000528922 CASC10Q5T4H9 136 aa2.99□□□□□ -1.93
CD44-230ENST00000528922 SCXQ7RTU7 201 aa2.99□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms