RNA–Protein interactions for RNA: ENST00000525688.5

CD44-220, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 560 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-220ENST00000525688 IAPPP10997 89 aa2.56□□□□□ -2
CD44-220ENST00000525688 ELOBQ15370 118 aa2.56□□□□□ -2
CD44-220ENST00000525688 DMAC1Q96GE9 116 aa2.56□□□□□ -2
CD44-220ENST00000525688 RHPN1-AS1Q9BWJ2 59 aa2.56□□□□□ -2
CD44-220ENST00000525688 CSMD3Q7Z407 3707 aa2.56□□□□□ -2
CD44-220ENST00000525688 NUPR2A6NF83 97 aa2.55□□□□□ -2
CD44-220ENST00000525688 SNRPGP15A8MWD9 76 aa2.55□□□□□ -2
CD44-220ENST00000525688 KRTAP13-3Q3SY46 172 aa2.55□□□□□ -2
CD44-220ENST00000525688 LINC00643Q86TS7 51 aa2.55□□□□□ -2
CD44-220ENST00000525688 LIMD2Q9BT23 127 aa2.55□□□□□ -2
CD44-220ENST00000525688 WFDC10AQ9H1F0 79 aa2.55□□□□□ -2
CD44-220ENST00000525688 PSENENQ9NZ42 101 aa2.55□□□□□ -2
CD44-220ENST00000525688 SACSQ9NZJ4 4579 aa2.55□□□□□ -2
CD44-220ENST00000525688 ORMDL1Q9P0S3 153 aa2.55□□□□□ -2
CD44-220ENST00000525688 A0A087WWC5 75 aa2.54□□□□□ -2
CD44-220ENST00000525688 A0A0J9YY99 117 aa2.54□□□□□ -2
CD44-220ENST00000525688 SDHAF1A6NFY7 115 aa2.54□□□□□ -2
CD44-220ENST00000525688 COX6CP09669 75 aa2.54□□□□□ -2
CD44-220ENST00000525688 KRTAP13-2Q52LG2 175 aa2.54□□□□□ -2
CD44-220ENST00000525688 TMEM170BQ5T4T1 132 aa2.54□□□□□ -2
CD44-220ENST00000525688 IGFL1Q6UW32 110 aa2.54□□□□□ -2
CD44-220ENST00000525688 HYDINQ4G0P3 5121 aa2.53□□□□□ -2
CD44-220ENST00000525688 IGKV3-7A0A075B6H7 116 aa2.53□□□□□ -2
CD44-220ENST00000525688 TRBV25-1A0A075B6N4 114 aa2.53□□□□□ -2
CD44-220ENST00000525688 CHKB-CPT1BH3BT56 60 aa2.53□□□□□ -2
CD44-220ENST00000525688 TPRXLQ17RH7 258 aa2.53□□□□□ -2
CD44-220ENST00000525688 NMES1Q9C002 83 aa2.53□□□□□ -2
CD44-220ENST00000525688 CDC42SE2Q9NRR3 84 aa2.53□□□□□ -2
CD44-220ENST00000525688 DYNC2H1Q8NCM8 4307 aaKnown RBP2.53□□□□□ -2
CD44-220ENST00000525688 A0A0G2JQZ4 141 aa2.52□□□□□ -2.01
CD44-220ENST00000525688 C7orf77A4D0Y5 90 aa2.52□□□□□ -2.01
CD44-220ENST00000525688 H3BRN7 92 aa2.52□□□□□ -2.01
CD44-220ENST00000525688 DEFB131AP59861 70 aa2.52□□□□□ -2.01
CD44-220ENST00000525688 PPP1R1CQ8WVI7 109 aa2.52□□□□□ -2.01
CD44-220ENST00000525688 DNAH1Q9P2D7 4330 aa2.51□□□□□ -2.01
CD44-220ENST00000525688 TRBV6-8A0A0A6YYG3 113 aa2.51□□□□□ -2.01
CD44-220ENST00000525688 IGHV3-30P01768 117 aa2.51□□□□□ -2.01
CD44-220ENST00000525688 IGHV3-30-5P0DP03 117 aa2.51□□□□□ -2.01
CD44-220ENST00000525688 ELOF1P60002 83 aaKnown RBP2.51□□□□□ -2.01
CD44-220ENST00000525688 ZNF56Q15929 161 aa2.51□□□□□ -2.01
CD44-220ENST00000525688 PSMG4Q5JS54 123 aa2.51□□□□□ -2.01
CD44-220ENST00000525688 SFTA2Q6UW10 78 aa2.51□□□□□ -2.01
CD44-220ENST00000525688 SPACA4Q8TDM5 124 aa2.51□□□□□ -2.01
CD44-220ENST00000525688 LYSTQ99698 3801 aa2.51□□□□□ -2.01
CD44-220ENST00000525688 LOC101927531A0A1B0GV80 90 aa2.5□□□□□ -2.01
CD44-220ENST00000525688 UMAD1C9J7I0 102 aa2.5□□□□□ -2.01
CD44-220ENST00000525688 SMIM13P0DJ93 91 aa2.5□□□□□ -2.01
CD44-220ENST00000525688 DEFB1P60022 68 aa2.5□□□□□ -2.01
CD44-220ENST00000525688 DEFB135Q30KP9 77 aa2.5□□□□□ -2.01
CD44-220ENST00000525688 GDF5OSQ5U4N7 250 aa2.5□□□□□ -2.01
CD44-220ENST00000525688 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa2.5□□□□□ -2.01
CD44-220ENST00000525688 LENEPQ9Y5L5 61 aa2.5□□□□□ -2.01
CD44-220ENST00000525688 VPS13DQ5THJ4 4388 aa2.49□□□□□ -2.01
CD44-220ENST00000525688 A8MTW9 85 aa2.49□□□□□ -2.01
CD44-220ENST00000525688 HIGD1CA8MV81 97 aa2.49□□□□□ -2.01
CD44-220ENST00000525688 PRR9Q5T870 116 aa2.49□□□□□ -2.01
CD44-220ENST00000525688 C10orf113Q5VZT2 155 aa2.49□□□□□ -2.01
CD44-220ENST00000525688 TMEM14CQ9P0S9 112 aa2.49□□□□□ -2.01
CD44-220ENST00000525688 EPPK1P58107 5090 aaKnown RBP2.48□□□□□ -2.01
CD44-220ENST00000525688 TRBV6-4A0A1B0GX49 114 aa2.48□□□□□ -2.01
CD44-220ENST00000525688 F8WEM9 126 aa2.48□□□□□ -2.01
CD44-220ENST00000525688 PDE6GP18545 87 aa2.48□□□□□ -2.01
CD44-220ENST00000525688 C20orf197Q8N268 126 aa2.48□□□□□ -2.01
CD44-220ENST00000525688 TVP23CQ96ET8 276 aa2.48□□□□□ -2.01
CD44-220ENST00000525688 ALMS1Q8TCU4 4167 aa2.47□□□□□ -2.01
CD44-220ENST00000525688 ZNF815PA8K554 130 aa2.47□□□□□ -2.01
CD44-220ENST00000525688 DEFB4AO15263 64 aa2.47□□□□□ -2.01
CD44-220ENST00000525688 KRTAP10-8P60410 259 aa2.47□□□□□ -2.01
CD44-220ENST00000525688 FXYD6-FXYD2A0A087WZ82 144 aa2.46□□□□□ -2.02
CD44-220ENST00000525688 LCE6AA0A183 80 aa2.46□□□□□ -2.02
CD44-220ENST00000525688 JMJD7-PLA2G4BH0Y9G9 81 aa2.46□□□□□ -2.02
CD44-220ENST00000525688 M0R3E3 92 aa2.46□□□□□ -2.02
CD44-220ENST00000525688 SERF2P84101 59 aa2.46□□□□□ -2.02
CD44-220ENST00000525688 SPINK13Q1W4C9 94 aa2.46□□□□□ -2.02
CD44-220ENST00000525688 BIRC6Q9NR09 4857 aa2.46□□□□□ -2.02
CD44-220ENST00000525688 KMT2AQ03164 3969 aa2.45□□□□□ -2.02
CD44-220ENST00000525688 MYMXA0A1B0GTQ4 84 aa2.45□□□□□ -2.02
CD44-220ENST00000525688 Q86TA4 180 aa2.45□□□□□ -2.02
CD44-220ENST00000525688 DNAH2Q9P225 4427 aa2.44□□□□□ -2.02
CD44-220ENST00000525688 DNAH10Q8IVF4 4471 aa2.44□□□□□ -2.02
CD44-220ENST00000525688 IGKV2-40A0A087WW87 121 aaPredicted RBP2.44□□□□□ -2.02
CD44-220ENST00000525688 PPP1R17O96001 155 aa2.44□□□□□ -2.02
CD44-220ENST00000525688 IGKV2D-40P01614 121 aaPredicted RBP2.44□□□□□ -2.02
CD44-220ENST00000525688 SFTA3P0C7M3 94 aa2.44□□□□□ -2.02
CD44-220ENST00000525688 SPART-AS1P0CW21 52 aa2.44□□□□□ -2.02
CD44-220ENST00000525688 ARL14EPLP0DKL9 152 aa2.44□□□□□ -2.02
CD44-220ENST00000525688 RNASE3P12724 160 aaKnown RBP2.44□□□□□ -2.02
CD44-220ENST00000525688 GCHFRP30047 84 aa2.44□□□□□ -2.02
CD44-220ENST00000525688 LCE3DQ9BYE3 92 aa2.44□□□□□ -2.02
CD44-220ENST00000525688 DNAH6Q9C0G6 4158 aa2.44□□□□□ -2.02
CD44-220ENST00000525688 FRAS1Q86XX4 4008 aa2.43□□□□□ -2.02
CD44-220ENST00000525688 DEFB131BA0A096LNP1 70 aa2.43□□□□□ -2.02
CD44-220ENST00000525688 CTXND1A0A1B0GTU2 59 aa2.43□□□□□ -2.02
CD44-220ENST00000525688 IGLV6-57P01721 117 aa2.43□□□□□ -2.02
CD44-220ENST00000525688 SPAG11BQ08648 103 aa2.43□□□□□ -2.02
CD44-220ENST00000525688 SPAG11AQ6PDA7 123 aa2.43□□□□□ -2.02
CD44-220ENST00000525688 TMEM263Q8WUH6 116 aaKnown RBP2.43□□□□□ -2.02
CD44-220ENST00000525688 AMELXQ99217 191 aa2.43□□□□□ -2.02
CD44-220ENST00000525688 TMEM167BQ9NRX6 74 aa2.43□□□□□ -2.02
CD44-220ENST00000525688 APLNQ9ULZ1 77 aa2.43□□□□□ -2.02
Retrieved 100 of 20,778 RNA–protein pairs in 54.3 ms