RNA–Protein interactions for RNA: ENST00000516428.1

RNU4-54P-201, Transcript of RNA, U4 small nuclear 54, pseudogene, humanhuman

BASIC

Gene RNU4-54P, Length 129 nt, Biotype snRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-54P-201ENST00000516428 TFF3Q07654 80 aa0.14□□□□□ -2.39
RNU4-54P-201ENST00000516428 DEFB135Q30KP9 77 aa0.14□□□□□ -2.39
RNU4-54P-201ENST00000516428 KRTAP19-3Q7Z4W3 81 aa0.14□□□□□ -2.39
RNU4-54P-201ENST00000516428 WFDC10BQ8IUB3 73 aa0.14□□□□□ -2.39
RNU4-54P-201ENST00000516428 U3KQA8 63 aa0.14□□□□□ -2.39
RNU4-54P-201ENST00000516428 ZDBF2Q9HCK1 2354 aa0.14□□□□□ -2.39
RNU4-54P-201ENST00000516428 NOTCH1P46531 2555 aa0.14□□□□□ -2.39
RNU4-54P-201ENST00000516428 PTPRZ1P23471 2315 aaPredicted RBP0.14□□□□□ -2.39
RNU4-54P-201ENST00000516428 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP0.14□□□□□ -2.39
RNU4-54P-201ENST00000516428 PTPRQQ9UMZ3 2332 aa0.14□□□□□ -2.39
RNU4-54P-201ENST00000516428 CNOT1A5YKK6 2376 aaKnown RBP0.13□□□□□ -2.39
RNU4-54P-201ENST00000516428 ASH1LQ9NR48 2969 aaKnown RBP0.13□□□□□ -2.39
RNU4-54P-201ENST00000516428 GOLGA4Q13439 2230 aaKnown RBP0.13□□□□□ -2.39
RNU4-54P-201ENST00000516428 USF3Q68DE3 2245 aa0.13□□□□□ -2.39
RNU4-54P-201ENST00000516428 MEGF8Q7Z7M0 2845 aa0.13□□□□□ -2.39
RNU4-54P-201ENST00000516428 AHNAKQ09666 5890 aaKnown RBP0.13□□□□□ -2.39
RNU4-54P-201ENST00000516428 ZFHX3Q15911 3703 aa0.13□□□□□ -2.39
RNU4-54P-201ENST00000516428 MMP24-AS1A0A0U1RRL7 71 aa0.13□□□□□ -2.39
RNU4-54P-201ENST00000516428 C9orf92A6NGG3 77 aa0.13□□□□□ -2.39
RNU4-54P-201ENST00000516428 A8MTW9 85 aa0.13□□□□□ -2.39
RNU4-54P-201ENST00000516428 KRTAP2-3P0C7H8 128 aa0.13□□□□□ -2.39
RNU4-54P-201ENST00000516428 KRTAP2-4Q9BYR9 128 aa0.13□□□□□ -2.39
RNU4-54P-201ENST00000516428 KRTAP2-1Q9BYU5 128 aa0.13□□□□□ -2.39
RNU4-54P-201ENST00000516428 KAAG1Q9UBP8 84 aa0.13□□□□□ -2.39
RNU4-54P-201ENST00000516428 TTC28Q96AY4 2481 aa0.13□□□□□ -2.39
RNU4-54P-201ENST00000516428 MUC16Q8WXI7 14507 aa0.13□□□□□ -2.39
RNU4-54P-201ENST00000516428 ANKRD17O75179 2603 aaKnown RBP0.13□□□□□ -2.39
RNU4-54P-201ENST00000516428 M0QZ58 72 aa0.12□□□□□ -2.39
RNU4-54P-201ENST00000516428 PRM1P04553 51 aa0.12□□□□□ -2.39
RNU4-54P-201ENST00000516428 POLR2KP53803 58 aaKnown RBP0.12□□□□□ -2.39
RNU4-54P-201ENST00000516428 KRTAP5-10Q6L8G5 202 aa0.12□□□□□ -2.39
RNU4-54P-201ENST00000516428 PIEZO2Q9H5I5 2752 aa0.12□□□□□ -2.39
RNU4-54P-201ENST00000516428 CACNA1HO95180 2353 aa0.12□□□□□ -2.39
RNU4-54P-201ENST00000516428 DOPEY2Q9Y3R5 2298 aa0.12□□□□□ -2.39
RNU4-54P-201ENST00000516428 C2CD3Q4AC94 2353 aa0.11□□□□□ -2.39
RNU4-54P-201ENST00000516428 MUC5BQ9HC84 5762 aaPredicted RBP0.11□□□□□ -2.39
RNU4-54P-201ENST00000516428 WNK2Q9Y3S1 2297 aa0.11□□□□□ -2.39
RNU4-54P-201ENST00000516428 TNP1P09430 55 aa0.11□□□□□ -2.39
RNU4-54P-201ENST00000516428 SPRR2DP22532 72 aa0.11□□□□□ -2.39
RNU4-54P-201ENST00000516428 SPRR2BP35325 72 aa0.11□□□□□ -2.39
RNU4-54P-201ENST00000516428 CLPSL2Q6UWE3 100 aa0.11□□□□□ -2.39
RNU4-54P-201ENST00000516428 PLCE1Q9P212 2302 aa0.11□□□□□ -2.39
RNU4-54P-201ENST00000516428 SPTBN2O15020 2390 aa0.11□□□□□ -2.39
RNU4-54P-201ENST00000516428 ZNF462Q96JM2 2506 aa0.11□□□□□ -2.39
RNU4-54P-201ENST00000516428 MDN1Q9NU22 5596 aa0.1□□□□□ -2.39
RNU4-54P-201ENST00000516428 CELSR2Q9HCU4 2923 aa0.1□□□□□ -2.39
RNU4-54P-201ENST00000516428 H3BNG1 76 aa0.1□□□□□ -2.39
RNU4-54P-201ENST00000516428 RPL39P62891 51 aaKnown RBP0.1□□□□□ -2.39
RNU4-54P-201ENST00000516428 KRTAP21-1Q3LI58 79 aa0.1□□□□□ -2.39
RNU4-54P-201ENST00000516428 RPL39LQ96EH5 51 aaKnown RBP0.1□□□□□ -2.39
RNU4-54P-201ENST00000516428 PCNX1Q96RV3 2341 aa0.1□□□□□ -2.39
RNU4-54P-201ENST00000516428 REV3LO60673 3130 aa0.1□□□□□ -2.39
RNU4-54P-201ENST00000516428 ZNF469Q96JG9 3925 aaPredicted RBP0.1□□□□□ -2.39
RNU4-54P-201ENST00000516428 F8P00451 2351 aa0.1□□□□□ -2.39
RNU4-54P-201ENST00000516428 TENM4Q6N022 2769 aa0.1□□□□□ -2.39
RNU4-54P-201ENST00000516428 PKDREJQ9NTG1 2253 aa0.1□□□□□ -2.39
RNU4-54P-201ENST00000516428 EP300Q09472 2414 aaPredicted RBP0.09□□□□□ -2.39
RNU4-54P-201ENST00000516428 ABCA12Q86UK0 2595 aa0.09□□□□□ -2.39
RNU4-54P-201ENST00000516428 FBN2P35556 2912 aa0.09□□□□□ -2.39
RNU4-54P-201ENST00000516428 SPTBN1Q01082 2364 aaKnown RBP0.09□□□□□ -2.39
RNU4-54P-201ENST00000516428 SPRR2AP35326 72 aa0.09□□□□□ -2.4
RNU4-54P-201ENST00000516428 DEFB110Q30KQ9 67 aa0.09□□□□□ -2.4
RNU4-54P-201ENST00000516428 LINC01590Q5TEZ4 76 aa0.09□□□□□ -2.4
RNU4-54P-201ENST00000516428 ARHGAP5-AS1Q96IT6 56 aa0.09□□□□□ -2.4
RNU4-54P-201ENST00000516428 TOMM7Q9P0U1 55 aa0.09□□□□□ -2.4
RNU4-54P-201ENST00000516428 ABCA2Q9BZC7 2435 aa0.09□□□□□ -2.4
RNU4-54P-201ENST00000516428 POLQO75417 2590 aa0.09□□□□□ -2.4
RNU4-54P-201ENST00000516428 CELSR1Q9NYQ6 3014 aa0.09□□□□□ -2.4
RNU4-54P-201ENST00000516428 MAST4O15021 2626 aa0.09□□□□□ -2.4
RNU4-54P-201ENST00000516428 USP24Q9UPU5 2620 aa0.09□□□□□ -2.4
RNU4-54P-201ENST00000516428 TPRP12270 2363 aaKnown RBP0.09□□□□□ -2.4
RNU4-54P-201ENST00000516428 VWFP04275 2813 aa0.09□□□□□ -2.4
RNU4-54P-201ENST00000516428 KMT2DO14686 5537 aa0.09□□□□□ -2.4
RNU4-54P-201ENST00000516428 SYNE1Q8NF91 8797 aaKnown RBP0.08□□□□□ -2.4
RNU4-54P-201ENST00000516428 CHD9Q3L8U1 2897 aa0.08□□□□□ -2.4
RNU4-54P-201ENST00000516428 A0A0C4DFX4 3053 aa0.08□□□□□ -2.4
RNU4-54P-201ENST00000516428 PDE4DIPQ5VU43 2346 aa0.08□□□□□ -2.4
RNU4-54P-201ENST00000516428 KNL1Q8NG31 2342 aa0.08□□□□□ -2.4
RNU4-54P-201ENST00000516428 MUC5ACP98088 5654 aa0.08□□□□□ -2.4
RNU4-54P-201ENST00000516428 MT1AP04731 61 aa0.08□□□□□ -2.4
RNU4-54P-201ENST00000516428 SPART-AS1P0CW21 52 aa0.08□□□□□ -2.4
RNU4-54P-201ENST00000516428 PRCDQ00LT1 54 aa0.08□□□□□ -2.4
RNU4-54P-201ENST00000516428 KRTAP8-1Q8IUC2 63 aa0.08□□□□□ -2.4
RNU4-54P-201ENST00000516428 LEAP2Q969E1 77 aa0.08□□□□□ -2.4
RNU4-54P-201ENST00000516428 OTOGQ6ZRI0 2925 aa0.08□□□□□ -2.4
RNU4-54P-201ENST00000516428 AKAP6Q13023 2319 aa0.08□□□□□ -2.4
RNU4-54P-201ENST00000516428 CSPG4Q6UVK1 2322 aa0.08□□□□□ -2.4
RNU4-54P-201ENST00000516428 ZNF292O60281 2723 aa0.07□□□□□ -2.4
RNU4-54P-201ENST00000516428 K7EIM0 57 aa0.07□□□□□ -2.4
RNU4-54P-201ENST00000516428 SPRR2EP22531 72 aa0.07□□□□□ -2.4
RNU4-54P-201ENST00000516428 KRTAP6-2Q3LI66 62 aa0.07□□□□□ -2.4
RNU4-54P-201ENST00000516428 SPRR2FQ96RM1 72 aa0.07□□□□□ -2.4
RNU4-54P-201ENST00000516428 TRANK1O15050 2925 aa0.07□□□□□ -2.4
RNU4-54P-201ENST00000516428 IGF2RP11717 2491 aa0.07□□□□□ -2.4
RNU4-54P-201ENST00000516428 NAV2Q8IVL1 2488 aa0.07□□□□□ -2.4
RNU4-54P-201ENST00000516428 PRRC2CQ9Y520 2896 aaKnown RBP0.07□□□□□ -2.4
RNU4-54P-201ENST00000516428 APCP25054 2843 aa0.06□□□□□ -2.4
RNU4-54P-201ENST00000516428 BDP1A6H8Y1 2624 aa0.06□□□□□ -2.4
RNU4-54P-201ENST00000516428 GVINP1Q7Z2Y8 2422 aa0.06□□□□□ -2.4
RNU4-54P-201ENST00000516428 DSPP15924 2871 aaKnown RBP0.06□□□□□ -2.4
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms