RNA–Protein interactions for RNA: ENST00000512632.5

LIMCH1-215, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 4,792 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-215ENST00000512632 BRK1Q8WUW1 75 aa5.83□□□□□ -1.48
LIMCH1-215ENST00000512632 HCG22E2RYF7 251 aa5.83□□□□□ -1.48
LIMCH1-215ENST00000512632 PRO0628Q9UI54 55 aa5.82□□□□□ -1.48
LIMCH1-215ENST00000512632 TENM2Q9NT68 2774 aa5.82□□□□□ -1.48
LIMCH1-215ENST00000512632 CSMD3Q7Z407 3707 aa5.81□□□□□ -1.48
LIMCH1-215ENST00000512632 PHF5AQ7RTV0 110 aaKnown RBP5.81□□□□□ -1.48
LIMCH1-215ENST00000512632 UBE2AP49459 152 aa5.81□□□□□ -1.48
LIMCH1-215ENST00000512632 KRTAP11-1Q8IUC1 163 aa5.81□□□□□ -1.48
LIMCH1-215ENST00000512632 K7EIL1 84 aa5.8□□□□□ -1.48
LIMCH1-215ENST00000512632 PKIGQ9Y2B9 76 aa5.8□□□□□ -1.48
LIMCH1-215ENST00000512632 C1orf64Q8NEQ6 169 aa5.8□□□□□ -1.48
LIMCH1-215ENST00000512632 LCE6AA0A183 80 aa5.8□□□□□ -1.48
LIMCH1-215ENST00000512632 C16orf90A8MZG2 172 aa5.8□□□□□ -1.48
LIMCH1-215ENST00000512632 ZCCHC13Q8WW36 166 aaKnown RBP5.79□□□□□ -1.48
LIMCH1-215ENST00000512632 hDV103S1A0JD37 113 aa5.78□□□□□ -1.48
LIMCH1-215ENST00000512632 UBE2DNLQ8IWF7 75 aa5.78□□□□□ -1.48
LIMCH1-215ENST00000512632 LINC00208Q96KT6 92 aa5.78□□□□□ -1.48
LIMCH1-215ENST00000512632 DNAH10Q8IVF4 4471 aa5.78□□□□□ -1.48
LIMCH1-215ENST00000512632 MP68P56378 58 aa5.75□□□□□ -1.49
LIMCH1-215ENST00000512632 HUWE1Q7Z6Z7 4374 aaKnown RBP5.75□□□□□ -1.49
LIMCH1-215ENST00000512632 COL7A1Q02388 2944 aa5.75□□□□□ -1.49
LIMCH1-215ENST00000512632 CNBPP62633 177 aaKnown RBP5.74□□□□□ -1.49
LIMCH1-215ENST00000512632 PSPHP1O15172 72 aa5.74□□□□□ -1.49
LIMCH1-215ENST00000512632 CASC2Q6XLA1 102 aa5.74□□□□□ -1.49
LIMCH1-215ENST00000512632 IGLV8-61A0A075B6I0 122 aa5.74□□□□□ -1.49
LIMCH1-215ENST00000512632 CMYA5Q8N3K9 4069 aa5.73□□□□□ -1.49
LIMCH1-215ENST00000512632 DNAH1Q9P2D7 4330 aa5.73□□□□□ -1.49
LIMCH1-215ENST00000512632 H0Y9J4 135 aa5.73□□□□□ -1.49
LIMCH1-215ENST00000512632 KRTAP29-1A8MX34 341 aaPredicted RBP5.72□□□□□ -1.49
LIMCH1-215ENST00000512632 PRR15Q8IV56 129 aa5.72□□□□□ -1.49
LIMCH1-215ENST00000512632 H0Y9P7 68 aa5.72□□□□□ -1.49
LIMCH1-215ENST00000512632 PANO1I0J062 215 aa5.72□□□□□ -1.49
LIMCH1-215ENST00000512632 TRAV22A0A0B4J277 110 aa5.71□□□□□ -1.5
LIMCH1-215ENST00000512632 LYSTQ99698 3801 aa5.7□□□□□ -1.5
LIMCH1-215ENST00000512632 LINC00472Q9H8W2 130 aa5.7□□□□□ -1.5
LIMCH1-215ENST00000512632 NDUFB1O75438 58 aa5.7□□□□□ -1.5
LIMCH1-215ENST00000512632 IGLV9-49A0A0B4J1Y8 123 aa5.69□□□□□ -1.5
LIMCH1-215ENST00000512632 A8MWP4 228 aa5.69□□□□□ -1.5
LIMCH1-215ENST00000512632 C9orf163Q8N9P6 203 aa5.69□□□□□ -1.5
LIMCH1-215ENST00000512632 CYP4F30PQ9H0H9 118 aa5.69□□□□□ -1.5
LIMCH1-215ENST00000512632 B9D2Q9BPU9 175 aa5.69□□□□□ -1.5
LIMCH1-215ENST00000512632 APLNQ9ULZ1 77 aa5.69□□□□□ -1.5
LIMCH1-215ENST00000512632 DNAH9Q9NYC9 4486 aa5.68□□□□□ -1.5
LIMCH1-215ENST00000512632 C14orf177Q52M58 125 aa5.68□□□□□ -1.5
LIMCH1-215ENST00000512632 SPRR1BP22528 89 aa5.68□□□□□ -1.5
LIMCH1-215ENST00000512632 Q1T7F1 81 aa5.67□□□□□ -1.5
LIMCH1-215ENST00000512632 A8MUN3 132 aa5.67□□□□□ -1.5
LIMCH1-215ENST00000512632 DNAH3Q8TD57 4116 aa5.67□□□□□ -1.5
LIMCH1-215ENST00000512632 C1orf195Q5TG92 126 aa5.65□□□□□ -1.51
LIMCH1-215ENST00000512632 PCOTHQ58A44 107 aa5.64□□□□□ -1.51
LIMCH1-215ENST00000512632 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP5.64□□□□□ -1.51
LIMCH1-215ENST00000512632 MMP24-AS1A0A0U1RRL7 71 aa5.64□□□□□ -1.51
LIMCH1-215ENST00000512632 ANAPC11Q9NYG5 84 aa5.64□□□□□ -1.51
LIMCH1-215ENST00000512632 NBDYA0A0U1RRE5 68 aa5.63□□□□□ -1.51
LIMCH1-215ENST00000512632 MDFIQ99750 246 aa5.62□□□□□ -1.51
LIMCH1-215ENST00000512632 A8MU10 97 aa5.62□□□□□ -1.51
LIMCH1-215ENST00000512632 NDUFS5O43920 106 aa5.61□□□□□ -1.51
LIMCH1-215ENST00000512632 KRTAP13-1Q8IUC0 172 aa5.61□□□□□ -1.51
LIMCH1-215ENST00000512632 H3BPC8 53 aa5.61□□□□□ -1.51
LIMCH1-215ENST00000512632 IGHV6-1A0A0B4J1U7 121 aa5.6□□□□□ -1.51
LIMCH1-215ENST00000512632 MOBPQ13875 183 aa5.6□□□□□ -1.51
LIMCH1-215ENST00000512632 SPANXA2-OT1Q8N9U9 137 aa5.6□□□□□ -1.51
LIMCH1-215ENST00000512632 Q6ZRN7 208 aaPredicted RBP5.59□□□□□ -1.51
LIMCH1-215ENST00000512632 Q8N9P0 234 aaPredicted RBP5.59□□□□□ -1.51
LIMCH1-215ENST00000512632 Q96NJ1 140 aa5.59□□□□□ -1.51
LIMCH1-215ENST00000512632 CHKB-CPT1BH3BT56 60 aa5.58□□□□□ -1.52
LIMCH1-215ENST00000512632 Q5VV11 94 aa5.58□□□□□ -1.52
LIMCH1-215ENST00000512632 PRR15LQ9BU68 103 aa5.58□□□□□ -1.52
LIMCH1-215ENST00000512632 C8orf17Q9NRJ1 99 aa5.58□□□□□ -1.52
LIMCH1-215ENST00000512632 SPACA4Q8TDM5 124 aa5.57□□□□□ -1.52
LIMCH1-215ENST00000512632 V9GYY9 64 aa5.57□□□□□ -1.52
LIMCH1-215ENST00000512632 COA5Q86WW8 74 aa5.57□□□□□ -1.52
LIMCH1-215ENST00000512632 DNAH7Q8WXX0 4024 aa5.57□□□□□ -1.52
LIMCH1-215ENST00000512632 A0A087X002 238 aa5.56□□□□□ -1.52
LIMCH1-215ENST00000512632 NOTCH2NLQ7Z3S9 236 aa5.56□□□□□ -1.52
LIMCH1-215ENST00000512632 PSORS1C2Q9UIG4 136 aa5.56□□□□□ -1.52
LIMCH1-215ENST00000512632 PLECQ15149 4684 aaKnown RBP5.56□□□□□ -1.52
LIMCH1-215ENST00000512632 SPINK6Q6UWN8 80 aa5.56□□□□□ -1.52
LIMCH1-215ENST00000512632 CDK2AP2O75956 126 aa5.56□□□□□ -1.52
LIMCH1-215ENST00000512632 CD164Q04900 197 aa5.56□□□□□ -1.52
LIMCH1-215ENST00000512632 IGLV7-46A0A075B6I9 117 aa5.55□□□□□ -1.52
LIMCH1-215ENST00000512632 WWC2-AS2Q96NR7 200 aa5.55□□□□□ -1.52
LIMCH1-215ENST00000512632 A0A087WTM6 91 aa5.55□□□□□ -1.52
LIMCH1-215ENST00000512632 TGP01266 2768 aa5.54□□□□□ -1.52
LIMCH1-215ENST00000512632 A0A1B0GVX0 72 aa5.54□□□□□ -1.52
LIMCH1-215ENST00000512632 LIMD2Q9BT23 127 aa5.54□□□□□ -1.52
LIMCH1-215ENST00000512632 TP53AIP1Q9HCN2 124 aa5.53□□□□□ -1.52
LIMCH1-215ENST00000512632 NUPR2A6NF83 97 aa5.52□□□□□ -1.53
LIMCH1-215ENST00000512632 RTL8CO15255 209 aa5.52□□□□□ -1.53
LIMCH1-215ENST00000512632 SPAG11AQ6PDA7 123 aa5.52□□□□□ -1.53
LIMCH1-215ENST00000512632 ASB16-AS1Q495Z4 193 aa5.52□□□□□ -1.53
LIMCH1-215ENST00000512632 MRPL34Q9BQ48 92 aaKnown RBP5.52□□□□□ -1.53
LIMCH1-215ENST00000512632 IGLV5-52A0A0A0MRZ9 124 aa5.51□□□□□ -1.53
LIMCH1-215ENST00000512632 LINC00483Q53H64 154 aa5.51□□□□□ -1.53
LIMCH1-215ENST00000512632 SPTSSBQ8NFR3 76 aa5.51□□□□□ -1.53
LIMCH1-215ENST00000512632 ZNF861PO60384 105 aa5.51□□□□□ -1.53
LIMCH1-215ENST00000512632 PMAIP1Q13794 54 aa5.51□□□□□ -1.53
LIMCH1-215ENST00000512632 ZNF706Q9Y5V0 76 aaPredicted RBP5.51□□□□□ -1.53
LIMCH1-215ENST00000512632 A6NED7 52 aa5.5□□□□□ -1.53
LIMCH1-215ENST00000512632 CIRBP-AS1Q8TBR5 109 aa5.5□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms