RNA–Protein interactions for RNA: ENST00000498143.5

USP54-216, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 4,313 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-216ENST00000498143 A0A087WYN8 130 aa3.47□□□□□ -1.85
USP54-216ENST00000498143 IGKV2-24A0A0C4DH68 120 aa3.47□□□□□ -1.85
USP54-216ENST00000498143 IGLV10-54A0A075B6I4 117 aa3.46□□□□□ -1.85
USP54-216ENST00000498143 CSAG1Q6PB30 78 aa3.46□□□□□ -1.85
USP54-216ENST00000498143 WFDC13Q8IUB5 93 aa3.46□□□□□ -1.85
USP54-216ENST00000498143 C16orf74Q96GX8 76 aa3.46□□□□□ -1.85
USP54-216ENST00000498143 C11orf21Q9P2W6 132 aa3.46□□□□□ -1.85
USP54-216ENST00000498143 M0QY20 66 aa3.46□□□□□ -1.86
USP54-216ENST00000498143 IGLV1-47P01700 117 aa3.46□□□□□ -1.86
USP54-216ENST00000498143 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP3.46□□□□□ -1.86
USP54-216ENST00000498143 COA5Q86WW8 74 aa3.46□□□□□ -1.86
USP54-216ENST00000498143 A6NN06 94 aa3.46□□□□□ -1.86
USP54-216ENST00000498143 A8MWP4 228 aa3.46□□□□□ -1.86
USP54-216ENST00000498143 TSHBP01222 138 aa3.46□□□□□ -1.86
USP54-216ENST00000498143 Q5VV11 94 aa3.46□□□□□ -1.86
USP54-216ENST00000498143 MOBPQ13875 183 aa3.45□□□□□ -1.86
USP54-216ENST00000498143 SPANXA2-OT1Q8N9U9 137 aa3.45□□□□□ -1.86
USP54-216ENST00000498143 SMG1Q96Q15 3661 aaKnown RBP3.45□□□□□ -1.86
USP54-216ENST00000498143 LINC00574Q9H8X3 128 aa3.45□□□□□ -1.86
USP54-216ENST00000498143 AMELXQ99217 191 aa3.45□□□□□ -1.86
USP54-216ENST00000498143 A0A087X002 238 aa3.44□□□□□ -1.86
USP54-216ENST00000498143 KRTAP23-1A1A580 65 aa3.44□□□□□ -1.86
USP54-216ENST00000498143 KLLNB2CW77 178 aa3.44□□□□□ -1.86
USP54-216ENST00000498143 ODF3L2Q3SX64 289 aa3.44□□□□□ -1.86
USP54-216ENST00000498143 ZFAND2AQ8N6M9 145 aa3.44□□□□□ -1.86
USP54-216ENST00000498143 C10orf25Q5T742 122 aa3.44□□□□□ -1.86
USP54-216ENST00000498143 ZNF580Q9UK33 172 aa3.44□□□□□ -1.86
USP54-216ENST00000498143 LINC00242Q5T6M2 205 aa3.44□□□□□ -1.86
USP54-216ENST00000498143 DEFB105AQ8NG35 78 aa3.43□□□□□ -1.86
USP54-216ENST00000498143 NPBQ8NG41 125 aa3.43□□□□□ -1.86
USP54-216ENST00000498143 CDC42SE2Q9NRR3 84 aa3.43□□□□□ -1.86
USP54-216ENST00000498143 TRBV7-4A0A0J9YYF1 115 aa3.43□□□□□ -1.86
USP54-216ENST00000498143 TLX1NBP0CAT3 122 aa3.43□□□□□ -1.86
USP54-216ENST00000498143 Q8N9P0 234 aaPredicted RBP3.43□□□□□ -1.86
USP54-216ENST00000498143 CRIPTQ9P021 101 aa3.43□□□□□ -1.86
USP54-216ENST00000498143 C22orf24Q9Y442 160 aa3.42□□□□□ -1.86
USP54-216ENST00000498143 TRBV6-4A0A1B0GX49 114 aa3.42□□□□□ -1.86
USP54-216ENST00000498143 FAM229BQ4G0N7 80 aa3.42□□□□□ -1.86
USP54-216ENST00000498143 A0A087WTM6 91 aa3.41□□□□□ -1.86
USP54-216ENST00000498143 LOC110117498A0A087WWA1 95 aa3.41□□□□□ -1.86
USP54-216ENST00000498143 PCOTHQ58A44 107 aa3.41□□□□□ -1.86
USP54-216ENST00000498143 DEFB1P60022 68 aa3.4□□□□□ -1.86
USP54-216ENST00000498143 ROMO1P60602 79 aa3.4□□□□□ -1.86
USP54-216ENST00000498143 K7EQG2 157 aa3.4□□□□□ -1.86
USP54-216ENST00000498143 DNAH10OSP0CZ25 163 aa3.4□□□□□ -1.86
USP54-216ENST00000498143 Q6ZTI0 123 aa3.4□□□□□ -1.86
USP54-216ENST00000498143 PRO0255Q9UI72 69 aa3.4□□□□□ -1.86
USP54-216ENST00000498143 PRR9Q5T870 116 aa3.4□□□□□ -1.87
USP54-216ENST00000498143 LINC01558Q9Y6Z2 57 aa3.4□□□□□ -1.87
USP54-216ENST00000498143 LINC00575Q6W349 94 aa3.4□□□□□ -1.87
USP54-216ENST00000498143 Q8NBF4 154 aa3.4□□□□□ -1.87
USP54-216ENST00000498143 CSNK1G2-AS1Q8NCQ2 148 aa3.4□□□□□ -1.87
USP54-216ENST00000498143 COL7A1Q02388 2944 aa3.39□□□□□ -1.87
USP54-216ENST00000498143 LITAFQ99732 161 aa3.39□□□□□ -1.87
USP54-216ENST00000498143 TP53AIP1Q9HCN2 124 aa3.39□□□□□ -1.87
USP54-216ENST00000498143 DMDP11532 3685 aa3.39□□□□□ -1.87
USP54-216ENST00000498143 LINC00167Q96N53 147 aa3.39□□□□□ -1.87
USP54-216ENST00000498143 ANGP03950 147 aaKnown RBP3.38□□□□□ -1.87
USP54-216ENST00000498143 LCE2AQ5TA79 106 aaPredicted RBP3.38□□□□□ -1.87
USP54-216ENST00000498143 CLPSL2Q6UWE3 100 aa3.38□□□□□ -1.87
USP54-216ENST00000498143 KRTAP29-1A8MX34 341 aaPredicted RBP3.37□□□□□ -1.87
USP54-216ENST00000498143 C1orf137Q5JT78 98 aa3.37□□□□□ -1.87
USP54-216ENST00000498143 KLK12Q9UKR0 248 aa3.37□□□□□ -1.87
USP54-216ENST00000498143 COX6A2Q02221 97 aa3.36□□□□□ -1.87
USP54-216ENST00000498143 NDUFAF8A1L188 74 aa3.36□□□□□ -1.87
USP54-216ENST00000498143 KRTAP10-2P60368 255 aa3.35□□□□□ -1.87
USP54-216ENST00000498143 C6orf48Q9UBA6 75 aa3.35□□□□□ -1.87
USP54-216ENST00000498143 KRTAP9-6A0A140TA67 174 aa3.35□□□□□ -1.87
USP54-216ENST00000498143 Q8NAQ8 132 aa3.35□□□□□ -1.87
USP54-216ENST00000498143 ZFHX4Q86UP3 3567 aa3.35□□□□□ -1.87
USP54-216ENST00000498143 MEGF8Q7Z7M0 2845 aa3.34□□□□□ -1.87
USP54-216ENST00000498143 LORP23490 312 aaPredicted RBP3.34□□□□□ -1.87
USP54-216ENST00000498143 DEFB116Q30KQ4 102 aa3.34□□□□□ -1.87
USP54-216ENST00000498143 Q8IZM0 81 aa3.34□□□□□ -1.88
USP54-216ENST00000498143 KRTAP4-5Q9BYR2 181 aa3.34□□□□□ -1.88
USP54-216ENST00000498143 LAMA5O15230 3695 aa3.33□□□□□ -1.88
USP54-216ENST00000498143 BIRC6Q9NR09 4857 aa3.33□□□□□ -1.88
USP54-216ENST00000498143 KRTAP10-1P60331 282 aa3.33□□□□□ -1.88
USP54-216ENST00000498143 CIRBP-AS1Q8TBR5 109 aa3.33□□□□□ -1.88
USP54-216ENST00000498143 C20orf166-AS1Q96NR2 134 aa3.33□□□□□ -1.88
USP54-216ENST00000498143 PSORS1C2Q9UIG4 136 aa3.33□□□□□ -1.88
USP54-216ENST00000498143 OBSCN-AS1Q96MR7 158 aa3.32□□□□□ -1.88
USP54-216ENST00000498143 IGKV2-28A0A075B6P5 120 aa3.31□□□□□ -1.88
USP54-216ENST00000498143 IGKV2D-28P01615 120 aa3.31□□□□□ -1.88
USP54-216ENST00000498143 LINC00959A0A1B0GUT2 108 aa3.31□□□□□ -1.88
USP54-216ENST00000498143 C9orf129Q5T035 196 aaKnown RBP3.3□□□□□ -1.88
USP54-216ENST00000498143 FAM104AQ969W3 186 aa3.3□□□□□ -1.88
USP54-216ENST00000498143 Q6ZR54 194 aa3.29□□□□□ -1.88
USP54-216ENST00000498143 ADM2Q7Z4H4 148 aa3.29□□□□□ -1.88
USP54-216ENST00000498143 LINC01556Q5JQF7 62 aa3.29□□□□□ -1.88
USP54-216ENST00000498143 SPINK7P58062 85 aa3.29□□□□□ -1.88
USP54-216ENST00000498143 KRTAP25-1Q3LHN0 102 aa3.29□□□□□ -1.88
USP54-216ENST00000498143 KCNQ1DNQ9H478 68 aa3.28□□□□□ -1.88
USP54-216ENST00000498143 COL27A1Q8IZC6 1860 aaPredicted RBP3.28□□□□□ -1.88
USP54-216ENST00000498143 A8MTW9 85 aa3.28□□□□□ -1.88
USP54-216ENST00000498143 RELNP78509 3460 aa3.28□□□□□ -1.88
USP54-216ENST00000498143 TYMSOSQ8TAI1 123 aa3.27□□□□□ -1.89
USP54-216ENST00000498143 IGLV4-60A0A075B6I1 120 aa3.26□□□□□ -1.89
USP54-216ENST00000498143 A0A1B0GVY2 172 aa3.25□□□□□ -1.89
USP54-216ENST00000498143 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP3.25□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms